Labshake search
Citations for Illumina :
3301 - 3350 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cancer Biology 2021Quote: Genome-wide DNA methylation profiling of all samples was performed using the Infinium MethylationEPIC (EPIC) BeadChip (Illumina, San Diego, CA, USA) or Infinium HumanMethylation450 (450k ...
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bioRxiv - Neuroscience 2021Quote: ... Tagmentation by Tn5 was performed using reagents from the Nextera DNA Sample Preparation Kit (FC-121-1030, Illumina; San Diego, CA) as previously described [5] ...
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bioRxiv - Neuroscience 2021Quote: ... The consortium assayed genome-wide expression in ten brain regions using Affymetrix Exon 1.0 ST arrays (Illumina, San Diego, CA, USA) from 134 neuropathologically normal donors (Ramasamy et al ...
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bioRxiv - Cancer Biology 2021Quote: ... RNA sequencing libraries were generated using the TruSeq Stranded RNA Library Prep Kit v2 (RS-122- 2001, Illumina, San Diego, CA) and 100 bp paired-end reads were sequenced on an Illumina HiSeq 2500 to at least 26 million reads per sample at the Functional Genomics Core Facility at UCSF ...
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bioRxiv - Immunology 2021Quote: ... 150pg of cDNA was used to generate Illumina compatible sequencing libraries with the NexteraXT library preparation kit (Illumina, San Diego, CA) per manufacturer’s protocols ...
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bioRxiv - Cell Biology 2020Quote: ... libraries for sequencing were prepared from using the TrueSeq RNA Sample Prep Kit v2-Set B (Illumina, San Diego, CA, US) according to the manufacturer’s instructions ...
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bioRxiv - Genetics 2021Quote: ... Libraries were then prepared for sequencing and sequenced on paired-end 150 bp mode on NovaSeq 6000 (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2020Quote: ... Library preparation was carried out as described in the Illumina Nextera XT Sample Preparation Guide (Illumina, Inc., San Diego, CA, USA). 150 pg of input cDNA were tagmented by the Nextera XT transposome ...
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bioRxiv - Genetics 2021Quote: ... Details of marker development and filtering were described as follows: GBS libraries were sequenced on a NextSeq500 (Illumina, San Diego, CA) with 150-bp single-end reads at the Genomics and Bioinformatics Core of the University of Georgia ...
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bioRxiv - Microbiology 2021Quote: ... Amplicon sequencing was performed on an Illumina MiSeq platform using Reagent Kit v2 [2 x 300 cycles] (Illumina Inc., CA, US). Demultiplexing and trimming of Illumina adapters and barcodes was done with Illumina MiSeq Reporter software (version 2.5.1.3).
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bioRxiv - Microbiology 2020Quote: ... Pair-end sequencing (2 × 150bp) was performed using an Illumina NovaSeq or Illumina NextSeq sequencing systems (Illumina, San Diego, CA, USA). The pipeline used to separate the sequencing output into 150-base-pair pair-end read FASTQ files by library and to load files onto an Amazon Web Service (AWS ...
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bioRxiv - Microbiology 2020Quote: ... to generate 2x 150bp paired-end reads or 2x 300 bp reads on an Illumina MiSeq (Illumina, San Diego, CA, USA). De novo assembly was also performed identical to the method as described in Coolen et al ...
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bioRxiv - Microbiology 2020Quote: ... The preparation of DNA libraries was performed using the Nextera® TM DNA Library PrepKit (Illumina Inc., San Diego, CA, USA) according to manufacturer’s guidelines ...
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bioRxiv - Immunology 2020Quote: ... Library preparation was carried out as described in the Illumina Nextera XT Sample Preparation Guide (Illumina, Inc., San Diego, CA, USA). 150 pg of input cDNA were tagmented (tagged and fragmented ...
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bioRxiv - Microbiology 2021Quote: ... Ethanol precipitated samples were resuspended in FPF sample buffer from the TruSeq stranded mRNA-Seq kit reagents (Illumina, San Diego, CA). mRNA abundance was quantified using a Quant-iT RNA Assay kit (Invitrogen ...
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bioRxiv - Microbiology 2021Quote: ... Genomic libraries were constructed form the DNA samples using the Nextera XT DNA Sample Preparation Kit (Illumina; San Diego, CA, USA), and paired-end sequencing (2×250 bp ...
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bioRxiv - Microbiology 2021Quote: ... at the Centro de Biotecnología Vegetal, Universidad Andrés Bello (Santiago, Chile) using the TruSeq Nano DNA Kit (Illumina Inc., CA, USA.) following the TruSeq Nano DNA Sample Preparation Guide 15041110 Rev ...
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bioRxiv - Immunology 2021Quote: The genomes of S.Tm and evolved derivatives were fully sequenced by the Miseq system (2×300bp reads, Illumina, San Diego, CA) operated at the Functional Genomic Center in Zürich ...
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bioRxiv - Cell Biology 2021Quote: Sample libraries were prepared for Illumina sequencing by denaturing and diluting the libraries per manufacturer’s protocol (Illumina, San Diego, CA, USA). All samples were pooled into one sequencing pool ...
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bioRxiv - Developmental Biology 2021Quote: ... Illumina library construction and sequencing with 100 bp paired-end reads on the Illumina HiSeq2000 platform (Illumina, Inc., San Diego, CA) were carried out at the Genome Center of the Max Planck Institute for Plant Breeding Research (Cologne) ...
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bioRxiv - Genomics 2021Quote: ... seriolae isolates were sequenced in four lanes of a single flowcell on the NextSeq 500 platform (Illumina, San Diego, CA, USA), to produce 150 bp paired reads at an average depth of ∼ 390× (range ...
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bioRxiv - Genomics 2021Quote: ... DNA fragments of the SARS CoV-2 genome were hybridized with biotinylated respiratory virus oligos (Illumina Inc., San Diego, CA, USA). The DNA fragments hybridized with the custom oligos were captured using streptavidin magnetic beads ...
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bioRxiv - Genomics 2021Quote: ... RNA-seq libraries were constructed using Illumina TruSeq Stranded Total RNA Library Prep Ribo-Zero Gold kit (Illumina, San Diego, CA) and sequenced on Illumina NextSeq 500 sequencer with 75-nucleotide single-end reads to reach average 32 million reads per sample ...
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bioRxiv - Genomics 2021Quote: ... base calling and base quality scoring of the run were processed on the HiSeq instrument by Real Time Analysis (RTA 1.17.21.3) and followed by generation of FASTQ sequence files by CASAVA 1.8 (Illumina, Inc. San Diego, CA, USA). Data are available in the repository NCBI Sequence Read Archive ...
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bioRxiv - Plant Biology 2023Quote: ... Paired-end 150 bp sequencing was performed on an Illumina NovaSeq 6000 using the S4 XP workflow (Illumina, San Diego, CA). Raw FASTQ files were pre-processed and trimmed using the fastp tool44 (--length_required 20 --average_qual 20 --detect_adapter_for_pe -w 10) ...
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bioRxiv - Systems Biology 2023Quote: ... following the manufacturer’s instructions and sequenced on single-end mode at the multiplexing level requested on HiSeq2500 (Illumina, San Diego, CA). The CASAVA 1.8.2 version of the Illumina pipeline was used to processed raw data for both format conversion and de-multiplexing ...
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bioRxiv - Systems Biology 2022Quote: ... RNA-seq libraries for each biosample were prepared using a KAPA Stranded RNA-Seq Library Preparation Kit (Illumina, San Diego, CA) and subjected to RNA-seq at the Beijing Genomics Institute (BGI ...
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bioRxiv - Immunology 2023Quote: ... and diluted to 1.8pM before being loaded onto a NextSeq 500/550 High Output Kit v2.5 (150 cycles, Illumina, San Diego, CA) for paired-end sequencing on a NextSeq 550 (Illumina).
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bioRxiv - Microbiology 2023Quote: ... Short-read next-generation sequencing (NGS) library construction was performed using the Nextera XT Library Prep Kit (Illumina, San Diego, CA). DNA quantification was performed in a 96-well microplate using the SpectraMax Quant dsDNA Assay Kit and the Gemini XPS Fluorometer (Molecular Devices ...
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bioRxiv - Genetics 2023Quote: ... DNA methylation data were obtained using the Illumina Infinium Methylation EPIC BeadChip array as previously described (Illumina, San Diego, CA, USA).17 Additional control methylation data were obtained from publicly available datasets taken from the Gene Expression Omnibus (GEO ...
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bioRxiv - Microbiology 2023Quote: ... pooled equimolarily and sequenced on an Illumina MiSeq v3 2×300 base pair (bp) platform (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Cell Biology 2023Quote: ... The RNA was subjected to prepare libraries using Illumina TruSeq RNA and DNA Sample Prep Kits (Illumina, San Diego, CA, USA). Library qualities were confirmed using Qubit 2.0 fluorometer (Life Technologies ...
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bioRxiv - Cancer Biology 2023Quote: ... paired-end sequencing was performed on an Illumina NovaSeq6000 sequencer using an S2 sequencing kit (Illumina Inc., San Diego, CA, USA) to an average depth of 45M reads per sample ...
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bioRxiv - Neuroscience 2023Quote: ... Total RNAs were purified and subjected to TruSeq stranded mRNA library preparation according to the manufacturer’s instructions (Illumina; San Diego, CA). The libraries were quantified by Qubit (Invitrogen ...
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bioRxiv - Neuroscience 2023Quote: ... Two indexed libraries were equimolarly pooled and sequenced on Illumina NOVAseq 6000 platform using the v2 Kit (Illumina, San Diego, CA) with a customised paired end ...
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bioRxiv - Neuroscience 2023Quote: ... Bisulfite converted libraries were sequenced to 35 – 40 million PE-150×150bp clusters per samples using HiSeq 4000 Sequencer (Illumina, CA).
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bioRxiv - Microbiology 2023Quote: ... cDNA library was constructed from enriched mRNA samples using the TruSeq RNA sample prep kit (Illumina, San Diego, CA, United States). rRNA depletion from total RNA was performed using the Ribo-Zero magnetic kit (Epicentre Biotechnologies ...
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bioRxiv - Developmental Biology 2023Quote: ... The libraries were sequenced at the Vanderbilt Technologies for Advanced Genomics using a NovaSeq 6000 System (Illumina, Inc, San Diego, CA) to produce pair-end reads 150 nucleotides long.
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V3-V4 regions were amplified (4) followed by addition of Illumina sequencing barcoded adaptors (Illumina, CA, USA.). The libraries were normalized and pooled for multiplex sequencing using the Illumina MiSeq v3 600 cycles cartridge (Illumina ...
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bioRxiv - Evolutionary Biology 2023Quote: ... 150bp sequencing libraries were prepared using the Illumina TruSeq RNA library kit by various companies listed in Table S7 and sequenced on Illumina HiSeq X platform (Illumina, CA).
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bioRxiv - Cancer Biology 2023Quote: ... Target-enriched RNA-seq libraries were analyzed on an Illumina NextSeq 500 sequencer using a NextSeq500/550 High Output v2 Kit (75 cycles) according to the standard manufacturer’s protocol (Illumina, CA, USA).
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bioRxiv - Cancer Biology 2023Quote: ... TruSeq® Stranded Total RNA LT Library Prep Kit or TruSeq Stranded mRNA Library Prep kit (Illumina, San Diego, CA, USA) was used for preparing Strand-specific whole transcriptome sequencing libraries by following the manufacturer’s procedure ...
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bioRxiv - Developmental Biology 2023Quote: ... The libraries were sequenced at the Vanderbilt Technologies for Advanced Genomics using a NovaSeq 6000 System (Illumina, Inc, San Diego, CA) to produce approximately 30 million pair-end reads 150 nucleotides long per sample.
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bioRxiv - Pathology 2023Quote: ... The libraries were then sequenced in paired-end 150 bp mode on an Illumina Nextseq 2000 system (Illumina, San Diego,CA), with sequencing depth determined by the percentage capture areas covered by each muscle sample.
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bioRxiv - Genomics 2023Quote: Sequencing libraries were prepared using the NextEra XT library prep kit and then run on NextSeq-500 sequencer (Illumina, CA, USA): a 150-bp paired-end sequencing run was performed using a Mid output Kit v2 ...
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bioRxiv - Microbiology 2023Quote: ... Samples were pooled and sequenced on an Illumina NextSeq 500 using paired-end (2×150bp) mode (Illumina, Inc., San Diego, CA).
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bioRxiv - Neuroscience 2022Quote: ... Tagmentation by Tn5 was performed using reagents from the Nextera DNA Sample Preparation Kit (FC-121-1030, Illumina; San Diego, CA) as previously described (Buenrostro et al. ...
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bioRxiv - Neuroscience 2022Quote: ... Single-end sequencing (i.e, 1×75bp) was performed in a single run on an Illumina NextSeq 500 (Illumina, San Diego, CA). Three independent experimental replicates were run for the Cebpg shRNA-mediated knockdown and shRNA control transgenic lines for a total of 6 libraries.
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bioRxiv - Neuroscience 2022Quote: ... High-throughput sequencing was performed as single-end 75 sequencings using a NextSeq 500 platform (Illumina, Inc., San Diego, CA, USA). SENSE 3′ mRNA-Seq reads were aligned using Bowtie2 version 2.1.0 (41) ...
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bioRxiv - Microbiology 2022Quote: ... and the cleaned pool was sequenced on the MiSeq using v2 2×250 base pair kit (Illumina, Inc, San Diego, CA).