Labshake search
Citations for Illumina :
3051 - 3100 of 3798 citations for Probable U3 small nucleolar RNA associated protein 11 UTP11 Antibody FITC since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Developmental Biology 2024Quote: ... one ug of RNA was used to make libraries using the TruSeq Stranded mRNA Library Prep Kit (Illumina# 20020595). Libraries were sequenced on the NovaSeq 6000 using an S4 flow cell at PE 2X100 at the Genomics Core of Weill Cornell Medicine.
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bioRxiv - Genetics 2024Quote: ... RNA libraries were sequenced as 150bp paired-end fragments using Illumina NovaSeq system (Illumina, Inc., San Diego, CA, USA). Short sequencing reads were filtered using fastx_toolkit (http://hannonlab.cshl.edu/fastx_toolkit/contact.html) ...
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bioRxiv - Cancer Biology 2024Quote: ... Single-cell libraries were generated using 10X Genomics Chromium Single-cell 3’ Library RNA-Seq Assays protocols targeting 8,000 cells from each fraction were sequenced on the NovaSeq sequencer (Illumina). The scRNA-seq data were analyzed with the Partek Flow software (Partek Inc) ...
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bioRxiv - Microbiology 2024Quote: ... directional libraries were prepared using the Illumina Stranded total RNA Prep ligation preparation kit following the manufacturer’s instructions (Illumina). Libraries were checked for quality on Fragment Analyzer (Agilent) ...
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bioRxiv - Microbiology 2024Quote: ... One microgram of total DNAse treated RNA was then prepared with the TruSeq Stranded mRNA Library Prep Kit (Illumina). Poly-A RNA was purified and fragmented before strand-specific cDNA synthesis ...
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bioRxiv - Physiology 2024Quote: ... RNASeq libraries were prepared from approximately 500ng total RNA using the TruSeq Stranded mRNA Library Prep kit (Illumina, 20020595) and TruSeq RNA CD Index plate (Illumina ...
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bioRxiv - Developmental Biology 2024Quote: ... 500 ng of total RNA was then used to make RNA-seq libraries with an Illumina Stranded mRNA Prep Kit according to the manufacturer’s protocol (Illumina). IDT for Illumina RNA UD Indexes Set A were used ...
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bioRxiv - Developmental Biology 2024Quote: Libraries were prepared from 250 ng of total RNA using the TruSeq Stranded mRNA Library Prep kit (Illumina, USA) and TruSeq RNA CD Index Plate (Illumina ...
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bioRxiv - Neuroscience 2024Quote: ... mRNA libraries were prepped using poly-A pull-down to enrich mRNAs from total RNA samples followed by Illumina TruSeq Stranded mRNA Library prep (Illumina ...
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bioRxiv - Molecular Biology 2024Quote: ... Sequencing libraries were generated using the Illumina Tru-Seq™ RNA Sample Preparation Kit (Illumina, San Diego, CA, USA) per the manufacturer’s protocol ...
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bioRxiv - Microbiology 2024Quote: ... Plant rRNA depletion was performed using TruSeq Stranded Total RNA with Ribo-Zero Plant (Illumina, San Diego, CA, USA). RNA from the ‘Inoculum’ samples only underwent bacterial rRNA depletion ...
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bioRxiv - Neuroscience 2024Quote: ... mRNA libraries were prepped using poly-A pull-down to enrich mRNAs from total RNA samples followed by Illumina TruSeq Stranded mRNA Library prep (Illumina ...
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bioRxiv - Systems Biology 2024Quote: Library preparation and QC: Library preparation was carried out using the TruSeq® Stranded Total RNA kit (Illumina #15032611). Final library quantification was performed with the Qubit 4.0 fluorometer (Thermo Fisher #Q33238 ...
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bioRxiv - Cancer Biology 2024Quote: ... The cDNA libraries were constructed for each RNA sample using the TruSeq Stranded mRNA Library Prep Kit (Illumina, Inc.) according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2024Quote: Library preparation for both human and mouse samples involved using the TruSeq stranded total-RNA Library Preparation kit (Illumina) with 1 μg of RNA ...
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bioRxiv - Cancer Biology 2024Quote: ... The mRNA-focused sequencing libraries from 1µg total RNA were prepared using TruSeq Stranded mRNA Library Prep kit (Illumina). PolyA mRNA was purified from total RNA using oligo-dT-attached magnetic beads and then fragmented by fragmentation buffer ...
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bioRxiv - Cancer Biology 2024Quote: Gene analysis was performed thanks to the GenoBird platform by 3’RNA-sequencing profiling using a NovaSeq 6000 (Illumina). The quality of raw sequence reads was assessed by FastQC ...
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bioRxiv - Cancer Biology 2024Quote: ... RNA was extracted via a modified Smart-Seq2 approach and library prepped with Nextera XT (Illumina, San Diego, CA). Cells were sequenced paired end by 150 base-pairs on an Illumina HiSeq 4000 (Fulgent) ...
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bioRxiv - Cancer Biology 2024Quote: ... We prepared the library from RNA samples with an RNA integrity number (RIN) greater than 7.0 using the TruSeq Stranded mRNA Library Prep Kit (Illumina), according to the recommended protocol ...
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bioRxiv - Cancer Biology 2024Quote: ... 500 ng of RNA with integrity number (RIN) > 9.5 from each sample was used for library construction with TruSeq RNA Sample Prep Kit v2 (Illumina) according to manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: ... 100 ng of DNase treated total RNA (RIN > 8) was processed with the TruSeq Stranded mRNA Prep Kit (Illumina) including poly(A ...
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bioRxiv - Genetics 2024Quote: ... 5 µg of total RNA for each sample was then processed using the Tru-Seq stranded mRNA kit (Illumina) following manufacturer instructions ...
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bioRxiv - Cell Biology 2024Quote: ... Illumina stranded total RNA prep library was prepared using 100 ng of RNA) as per the manufacturer’s instructions (Illumina Stranded mRNA Preparation and Ligation kit, (Illumina) and sequenced with Novaseq 6000 (S4 instrument ...
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bioRxiv - Plant Biology 2020Quote: ... a 200 µL aliquot of RNA was treated with 50 units of nuclease provided by the ARTSeq/TruSeq Ribo Profile kit (Illumina) for an hour at 23°C on a nutator ...
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bioRxiv - Plant Biology 2020Quote: ... Library preparation and RNA sequencing were carried out by BGI Genomics (Shenzhen, China) using HiSeq 2000 (Illumina, San Diego, U.S.A.) using the single-end mode 50 base mode.
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bioRxiv - Cancer Biology 2021Quote: ... The RNA was sequenced using single-end 50 bp reads on the Illumina HiSeq platform (Illumina, San Diego CA, USA). Raw sequence data were exported to FASTQ format and were filtered based on quality scores (Quality cutoff of 20 for at least 90% of the bases in the sequence) ...
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bioRxiv - Cell Biology 2020Quote: ... cDNA libraries were constructed from individual mouse samples and RNA-seq libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina). Libraries were sequenced on the Illumina platform ...
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bioRxiv - Cell Biology 2020Quote: ... Sequencing was performed using the Illumina TruSeq Stranded Total RNA Library Prep Kit on an Illumina NextSeq 500 instrument using their paired-end 75 base sequencing protocol (Illumina). Sequencing yielded an average of 90.8 million reads per sample ...
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bioRxiv - Cell Biology 2020Quote: ... Equal amount of each RNA-seq library was mixed for sequencing in one lane of Illumnia HiSeq3000 in paired-end 150 base mode (Illumina).
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bioRxiv - Cell Biology 2020Quote: ... Illumina sequencing libraries were generated with the KAPA Biosystems Stranded RNA-Seq Kit (52) and sequenced using HiSeq 2000 (Illumina) with 100bp paired-end reads ...
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bioRxiv - Cell Biology 2020Quote: ... and library enrichment were performed as described in the Low Throughput protocol of the TruSeq RNA Sample Prep Guide (Illumina). RNA libraries were assessed for quality and quantity with the Agilent 2100 BioAnalyzer and the Quant-iT PicoGreen dsDNA Assay Kit (Life Technologies) ...
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bioRxiv - Developmental Biology 2021Quote: ... 100 ng total RNA (or less if <100 ng was yielded from a PSM) was used to prepare libraries using either a TruSeq RNA Library Prep Kit v2 (Illumina) or a TruSeq Stranded mRNA kit (Illumina ...
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bioRxiv - Genetics 2021Quote: ... Full-length cDNA was prepared using the SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing and sequencing libraries prepared using the Nextera XT DNA library preparation kit (Illumina). The resulting libraries were evaluated using a 4200 TapeStation (Agilent Technologies ...
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bioRxiv - Genetics 2021Quote: ... RNA-seq libraries were constructed by the Genome Technologies core facility at The Jackson Laboratory using the TruSeq RNA Library Prep Kit v2 (Illumina). Libraries were checked for quality and concentration using the DNA 1000 LabChip assay (Agilent Technologies ...
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bioRxiv - Genomics 2020Quote: ... Poly-A-enriched RNA was used to prepare libraries with TruSeq RNA Sample Preparation kit v2 y v4 (ref. RS-122-2001/2, Illumina) according to instructions from manufacturer followed by single-end (run1 ...
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bioRxiv - Developmental Biology 2021Quote: ... The library preparation and RNA-sequencing were performed on an Illumina HiSeq platform generating 150 bp paired-end reads (NEBNext Ultra RNA Library prep kit for Illumina). Two replicates per group were analyzed.
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bioRxiv - Developmental Biology 2021Quote: ... The circRNA sequencing libraries were then generated using TruSeq Stranded Total RNA HT Sample Prep Kit (Illumina RS-122-2203) according to the manufacturer’s instructions with minor modifications ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Library preparation was carried with SENSE Total RNA-seq Library Prep Kit (Lexogen, Austria) and 75 nt single end sequencing was carried out with NextSeq500 (Illumina).
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bioRxiv - Evolutionary Biology 2021Quote: ... These RPFs were depleted of ribosomal RNA by treatment with the Ribo-Zero Gold rRNA removal kit for yeast from Illumina company ...
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bioRxiv - Developmental Biology 2020Quote: ... was isolated from pooled E8.0-E8.5 stage embryos using Isogen II reagent (Nippongene) and subjected to RNA-seq library preparation using TruSeq Stranded mRNA LT Sample Prep Kit (Illumina) based on manufacturer’s protocol ...
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bioRxiv - Developmental Biology 2020Quote: ... adapter indexed strand-specific RNA-seq libraries were generated from 1000 ng of total RNA following the dUTP method using the stranded mRNA LT sample kit (Illumina). Libraries were pooled and sequenced on Illumina HiSeq2500 in 75bp paired-end mode ...
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bioRxiv - Developmental Biology 2020Quote: ... Ribosomal RNA was removed from 500ng of input RNA using either Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) from Illumina or NEBNext rRNA Depletion Kit (Human/ Mouse/ Rat) ...
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bioRxiv - Developmental Biology 2021Quote: ... Chromium Single Cell 3’ v2 single cell RNA-Seq of poly A selected mRNA kit (10X Genomics) and Sequencing was processed on NextSeq 500 (Illumina). Bioinformatics base call by bcl2fastq v ...
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bioRxiv - Microbiology 2022Quote: All resulting fastq files were aligned to the Homo Sapiens genome (GRCh38, RefSeq) using the RNA-Seq Alignment application (Basespace, Illumina). Salmon files were analyzed using the DESeq2 analysis pipeline (Love et al. ...
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bioRxiv - Microbiology 2022Quote: ... Sequence-ready libraries were prepared using the Illumina TruSeq Stranded Total RNA kit with Ribo-Zero Gold rRNA depletion (Illumina). Quality assessment and quantification of RNA preparations and libraries were carried out using an Agilent 4200 TapeStation and Qubit 3 ...
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bioRxiv - Molecular Biology 2022Quote: ... RNA-Seq libraries were made following a standard protocol using Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina) and TruSeq Stranded mRNA Library Prep (Illumina) ...
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bioRxiv - Cell Biology 2022Quote: ... 15 bulk RNA libraries were pooled at equal molecular concentration and sequenced using the NextSeq 550 High Output kit (Illumina) with 35 paired-end reads.
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bioRxiv - Neuroscience 2021Quote: ... 1 µg of total RNA was used for library preparation using TruSeq stranded mRNA library preparation kit (cat. no. 20020594, Illumina). Briefly ...
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bioRxiv - Molecular Biology 2020Quote: For meRIP-Seq RNA-seq libraries were prepared from both eluate and 10% input mRNA using the TruSeq mRNA library prep kit (Illumina), subjected to quality control (MultiQC) ...
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bioRxiv - Molecular Biology 2020Quote: ... Half of the long RNA eluate was used to generate poly(A)+ libraries using the TruSeq Stranded mRNA Library Prep Kit (Illumina). The other half the long RNA eluate was used for total RNA library construction ...