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Citations for Illumina :
1301 - 1350 of 1646 citations for 5 Bromo 2 Tert Butyldimethylsilyl 4 Methylthiazole since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2024Quote: ... Amplicon libraries were sequenced by 2 × 250 bp paired-end sequencing on a MiSeq platform (Illumina, San Diego, CA, USA) using MiSeq v2 Reagent NANO Kit ...
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bioRxiv - Immunology 2024Quote: ... Libraries were pooled together and paired-end sequencing was performed on an Illumina MiSeq with a MiSeq Reagent Kit v3 (2 × 300 cycles) cartridge (Illumina). The primers are listed in Supplementary file 9.
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bioRxiv - Evolutionary Biology 2024Quote: ... All qRT-PCR inconclusive samples were sequenced on one run of an Illumina MiSeq instrument at the University of Colorado Boulder Center for Microbial Exploration Sequencing Center using a v2 500 cycle 2 x 250 bp kit (Illumina). Sequencing datasets from six of these passed quality control and are included in this report ...
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bioRxiv - Microbiology 2024Quote: ... The samples were pooled in equimolar concentrations and sequenced (2 x 150 bp, PE) on a Novaseq platform (Illumina, USA). All kits were used as per the manufacturer’s instructions with minor modifications.
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bioRxiv - Neuroscience 2024Quote: ... and samples were sequenced (2×101bp; 40 million reads/sample) using a Nova-Seq S4 (Illumina, San Diego, CA, USA). One sample (female ZT10 ...
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bioRxiv - Molecular Biology 2024Quote: ... cDNA libraries were balanced by shallow iSeq and sequenced with a NovaSeq 6000 System (Illumina, S4, 2 x 100 cycles).
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bioRxiv - Molecular Biology 2024Quote: ... DNA recovered from the sorted droplets was amplified using Ampli-Barcode and NGS-Reverse primers (Supplementary Table 2) to append P5 and P7 sequences subsequently used for molecular indexing using the Nextera Indexing kit (Illumina) as recommended by the supplier ...
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bioRxiv - Evolutionary Biology 2024Quote: All qRT-PCR positive samples were sequenced on the same Illumina MiSeq instrument at the Colorado State University Next Generation Sequencing Facility using v2 500 cycle 2 x 250 bp kits (Illumina). The technical replicate libraries for Lion F collected on October 21st were pooled and sequenced as a test run with a separate project ...
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bioRxiv - Genomics 2024Quote: ... Second tagmentation: 35 nl tagmentation mixture (160 μl recipe: 148-152 μl 2 × TD buffer, 12-8 μl TDE1, Illumina) was dispensed into the selected nanowells of the chip ...
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bioRxiv - Cancer Biology 2024Quote: ... Library preparation was performed by the YCGA followed by sequencing to a depth of 30 million paired-end 150 bp reads (2×150) per sample on NovaSeq (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... the libraries were sequenced on the NextSeq 500 using a Mid-output 150-cycle Kit in 2×50 configuration to generate 6-8 million read-pairs per sample (Illumina). FastQC were used to examine characteristics of the sequencing libraries ...
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bioRxiv - Bioengineering 2024Quote: ... these barcoded libraries were equally pooled and paired-end sequenced (2 x 150 bp) on the NextSeq 2000 instrument (Illumina). FastQC v0.11.9 was used to evaluate the quality of RNA-Seq reads ...
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing of the pooled samples was performed in paired-end mode (2 x 250 bp) using a MiSeq system (Illumina) according to manufacturer’s guidelines ...
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bioRxiv - Cancer Biology 2024Quote: ... libraries were prepared according to the dUTP protocol91 and paired-end sequencing (2×100bp) was performed on the NovaSeq 6000 or NovaSeq X Plus platforms (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... The resulting 2nM pool was denatured and diluted to 10 pM with 5% PhiX spike-in DNA and sequenced (single read, 51 cycles, high output mode) on 2 lanes of HiSeq 2000 system (Illumina).
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bioRxiv - Evolutionary Biology 2024Quote: ... Next-gen sequencing (2 × 150 bp paired end reads) was performed on a NovaSeq 6000 instrument (Illumina, San Diego, CA). Adapter sequences and poor quality reads were filtered with Trimmomatic v34 (Bolger et al ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Each library was paired-end sequenced (2 ξ 150 bp) on an lllumina NovaSeq platform (Illumina, San Diego, CA, USA).
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bioRxiv - Cell Biology 2024Quote: ... were pooled at a 1:1:1:etc ratio before sequencing on an Illumina NextSeq 500/550 instrument using a version 2 kit (Illumina). Fastq files were generated for each library in Illumina BaseSpace ...
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bioRxiv - Developmental Biology 2024Quote: ... 2 µL amplified cDNA was tagmented in 1X Tagmentation Buffer using 0.8 µL bead-linked transposome (Illumina DNA Prep, (M) Tagmentation ...
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bioRxiv - Plant Biology 2021Quote: ... were randomly pooled (4 samples per pool) and grouped using the TruSeq Paired-End Reads Cluster Kit on the cBot platform (Illumina Inc., San Diego, CA, USA). The cDNA libraries were posteriorly sequenced on the Illumina Genome platform Analyzer IIx with a TruSeq kit with 36 cycles (Illumina ...
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bioRxiv - Neuroscience 2020Quote: ... 50bp RNA-seq of IP fractions and total homogenate from 5 replicates per cell type (20 samples total) was performed on a single lane of a HiSeq 3000 (Illumina, San Diego, California), yielding ∼350M reads ...
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bioRxiv - Neuroscience 2020Quote: ... indexing and amplification of the transposed DNA samples was performed by combining 10 µL of transposed DNA with the following: 5 µL of the Nextera i5 and i7 indexed amplification primers (Nextera Index Kit, Illumina, FC-121-1011), 25 μl of the NEBNext High-Fidelity 2x PCR Master Mix (New England Biolabs ...
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bioRxiv - Neuroscience 2021Quote: ... a forward primer 5′-CTT TCC CTA CAC GAC GCT CTT CCG ATC TAC GGR AGG CAG CAG-3 (28-nt Illumina adapter (in bold) followed the 14 nt broad range bacterial primer 343F ...
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bioRxiv - Evolutionary Biology 2022Quote: ... complete cytb was amplified using two different strategies: in 5 overlapping fragments (302 to 375 bp long) to perform short-read sequencing (Illumina or Ion Torrent), and in a single fragment (1457 bp long ...
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bioRxiv - Cell Biology 2020Quote: ... DNA fragments were end-paired and phosphorylated at the 5’ end and successively adenylated at the 3’ end (following Illumina paired-end protocols), and the libraries ligated to the precapture adaptor were amplified and indexed via PCR ...
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bioRxiv - Genomics 2021Quote: ... RNA-seq libraries were prepared from 500 ng total RNA using the TruSeq stranded mRNA library preparation kit (Illumina Inc, Cat# 20020594/5) including polyA selection ...
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bioRxiv - Microbiology 2021Quote: ... [34] was used to compute alignments with a minimum size of 5 kbp (--min-alignment 5000) considering as reference short-read contigs assembled with Velvet (section Collection of Illumina short-read assemblies) from the same isolate against Unicycler ...
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bioRxiv - Immunology 2020Quote: ... PCR amplification and index incorporation were performed in a 50 μl reaction containing 5 μl of forward and reverse index primers (Illumina Nextera Index Kit), 15 μl NPM ...
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bioRxiv - Genomics 2020Quote: ... Individual cells were sequenced to a mean depth of ~1.5 million 38 bp paired-end reads on an Illumina NextSeq 500 instrument with 75 cycle high output kits (Illumina TG-160-2005).
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bioRxiv - Microbiology 2024Quote: Total RNA of 5 μg was used to construct strand-specific RNA-sequencing libraries using the TruSeq RNA sample preparation Kit from Illumina (San Diego, CA). Briefly ...
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bioRxiv - Genomics 2023Quote: ... about 1.5 ng purified pre-amplified cDNA sample was fragmented in four 20 μl tagmentation mix (10 μl 2x TD buffer, 5 μl Nextera XT (Illumina, FC-131-1096), and 5 μl cDNA sample ...
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bioRxiv - Cell Biology 2024Quote: ... library was generated for 10 plasma exosome samples (n=5, young and old individuals each) using a propriety Illumina Truseq™ Small RNA Preparation kit (Illumina, # RS-930), according to the manufacturers’ guide ...
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bioRxiv - Evolutionary Biology 2024Quote: ... DNA solutions of approximately ≥5 ng μL−1 were subjected to the tagmentation reaction using the Nextera DNA Flex Library Prep Kit (Illumina, San Diego, CA) was used at 1/40 scale of the provided protocol ...
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bioRxiv - Microbiology 2024Quote: ... Amplicon library was mixed with 5% of PhiX and sequenced with four MiSeq reagent kits v3 600 cycles (Illumina, San Diego, California, USA). A blank extraction kit control ...
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bioRxiv - Microbiology 2020Quote: ... Paired-end sequencing (2× 250 bp) of multiplexed DNA libraries was performed on an Illumina MiSeq platform (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2020Quote: ... The first set of reads was obtained on an Illumina MiniSeq using a paired-end 2×150 bp approach with a library obtained using Nextera Flex (Illumina, inc.). A second set of reads was obtained on a MinION nanopore sequencer (Oxford Nanopore Technology ...
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bioRxiv - Cell Biology 2020Quote: ... for RNA-seq library preparation (250-300 bp insert cDNA library) and sequencing (2×150 bp paired-end reads on an Illumina Platform).
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bioRxiv - Genomics 2020Quote: ... The purified PCR reactions were pooled together and then sent for paired-end Illumina MiSeq sequencing (Illumina 2 × 250 v2 kit) at the Edinburgh Genomics Facility (University of Edinburgh ...
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bioRxiv - Developmental Biology 2021Quote: ... was used to generate indexed 2×75bp paired-end cDNA libraries for subsequent sequencing on NextSeq 500 sequencing platform (Illumina, Inc.). Library preparation ...
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bioRxiv - Molecular Biology 2021Quote: ... Paired-end sequencing (2×75 cycles) was performed at the Bio-Environnement platform (University of Perpignan, France) on a NextSeq 550 instrument (Illumina, USA).
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bioRxiv - Cell Biology 2022Quote: ... For library preparation an amount of 2 mg of total RNA per sample was processed using Illumina’s TruSeq RNA Sample Prep Kit (Illumina, CA, USA) following the manufacturer’s instruction ...
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bioRxiv - Genomics 2020Quote: ... The 800 bp libraries and part of the three MP libraries were sequenced as 2×160 bp nucleotides on the HiSeq2500 (v4 Illumina chemistry) while the remainder of the MP libraries were also sequenced as 2×150 bp on the HiSeq4000 ...
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bioRxiv - Genomics 2020Quote: ... Illumina sequencing was performed by the Vienna Biocenter Core Facilities on a HiSeq2500 platform (2×125bp; Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2021Quote: ... The final pool was sequenced on Illumina MiSeq platform 2×300 bp using the MiSeq Reagent Kit V3 (600 cycles PE) cartridge (Illumina, USA).
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bioRxiv - Evolutionary Biology 2020Quote: ... Illumina sequencing was performed by the Vienna Biocenter Core Facilities using the HiSeq2500 platform (2×125bp; Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2021Quote: ... and paired end read sequencing (2 x150bp) was performed using MiSeq platform and reagent kit v2 (Illumina, San Diego, CA, USA). For sequences obtained by HTS a pre-alignment quality check was performed using the FASTQC program v0.11.8 and the Trim Galore script (52 ...
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bioRxiv - Plant Biology 2020Quote: ... Sequencing was performed on an Illumina MiSeq platform at the University of Manchester genomics facility using shotgun 2×250 paired-end sequencing methodology (Nextera DNA Preparation Kit, Illumina, USA). The sample used 0.33 of a flow cell and primer design was optimized for use with Platinum Taq DNA polymerase (Invitrogen ...
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bioRxiv - Microbiology 2021Quote: RNA samples from three biological replicates of BeWo cells infected with WT or xrRNA2’ mutant ZIKVMR766 or mock-infected were subjected to poly(A) RNA enrichment and library preparation using TruSeq 2 Library Preparation Kit (Illumina, USA). Libraries were sequenced on an Illumina NextSeq 500 instrument using NextSeq 500/550 High Output Kit v2.5 ...
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bioRxiv - Cell Biology 2020Quote: ... were quantified using qPCR and optimal concentration of the library pool used to generate the clusters on the surface of a flowcell before sequencing on a NextSeq500 instrument (2×51 cycles, single read) according to the manufacturer instructions (Illumina Inc.).
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bioRxiv - Immunology 2022Quote: ... a multiplexed amplicon-based whole-viral-genome approach using the NEBNext® ARTIC SARS-CoV-2 Library Prep Kit (Illumina®) was employed (New England Biolabs ...