Labshake search
Citations for Illumina :
1101 - 1150 of 1646 citations for 5 Bromo 2 Tert Butyldimethylsilyl 4 Methylthiazole since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Plant Biology 2022Quote: ... At least 2 ng of ChIP-DNA were used for Illumina library preparation according to the manufacturer’s instructions (Illumina). Library construction and sequencing (150 bp of paired-end sequences ...
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bioRxiv - Genomics 2022Quote: ... Libraries were sequenced on the Illumina MiSeq platform using the 2 × 250 bp V2 sequencing chemistry (Illumina Inc., USA). One positive control and eight negative controls comprising a benzimidazole-susceptible A ...
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bioRxiv - Microbiology 2023Quote: ... The raw fastq files (2 × 150 bp) generated by an Illumina® NovaSeq 6000 (Illumina®, San Diego, USA) were trimmed to remove Illumina adapter sequences using Cutadapt v1.2 ...
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bioRxiv - Genomics 2022Quote: ... and sequenced on a NovaSeq 6000 instrument (NovaSeq 6000 S2 Reagent Kit (Illumina, 20012861, PE 2 x 75 cycles)) ...
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bioRxiv - Cancer Biology 2023Quote: ... following the manufacturer’s protocols and sequenced using the 2 x 75 bases paired-end protocol on a NextSeq550 instrument (Illumina). For differential expression analysis ...
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bioRxiv - Microbiology 2024Quote: ... The amplicon libraries were paired-end sequenced (2 × 300 bp) on the Illumina MiSeq using v3 chemistry (Illumina, USA). 10 to 20% PhiX control library was added to mitigate low diversity library effects.
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bioRxiv - Cancer Biology 2024Quote: ... sample libraries were sequenced to a target coverage of 0.5x using paired-end 2×100bp reads on a NovaSeq 6000 (Illumina). Sequencing libraries were deconvoluted using bcl2fastq ...
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bioRxiv - Developmental Biology 2024Quote: ... Libraries were generated from day 2 RNA using the TruSeq RNA Library Prep Kit v2 (Illumina RS-122-2001) and day 3 RNA using the TruSeq Stranded mRNA Library Prep Kit (Illumina 20020594 ...
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bioRxiv - Microbiology 2024Quote: ... sequenced (251bp x 2) using the MiSeq benchtop sequencer and a 500 cycle V2 reagent kit (Illumina Inc., USA).
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bioRxiv - Immunology 2024Quote: ... quantitated by qPCR and sequenced on 2 10B lanes with 28 x 150 nucleotide reads on a NovaSeq X Plus with V1.0 sequencing kits (Illumina). The samples each yielded 350-450 million paired reads.
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bioRxiv - Microbiology 2024Quote: ... 2 µl of isolated genomic DNA sample and 100 nmol of each primer (WISH_Illumina_fwd and WISH_Illumina_rev, see Table S6) were used in a DreamTaq MasterMix (Thermo Fisher Scientific) ...
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bioRxiv - Microbiology 2024Quote: ... 2 µl of isolated genomic DNA sample and 100 nmol of each primer (WISH_Illumina_fwd and WISH_Illumina_rev, see Table S11) were used in a DreamTaq MasterMix (Thermo Fisher Scientific) ...
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bioRxiv - Molecular Biology 2024Quote: ... The final DNA library was subjected to paired-end sequencing (2×100bp) either on NovaSeq (Illumina, San Diego, CA), for metagenomics ...
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bioRxiv - Immunology 2024Quote: ... on a NextSeq 500 using the NextSeq 500/550 High Output Kit V.2 according to the manufacturer’s instructions (Illumina). For each sample ...
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bioRxiv - Microbiology 2024Quote: ... All sequencing was done using 2 x 150bp using Illumina HiSeq 4000 Instrument (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Immunology 2024Quote: ... The sequencing run was performed using Illumina NovaSeq 6000 SP v1.5 (650-800 M reads/run, 2 lanes; Illumina) in the Finnish Functional Genome Centre (Turku Bioscience Center ...
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were clustered and sequenced at 2×150 bp on a NovaSeq 6000 System using the NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles; Illumina).
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were clustered and sequenced at 2×150 bp on a NovaSeq 6000 System using the NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles; Illumina).
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were clustered and sequenced at 2×150 bp on a NovaSeq 6000 System using the NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles; Illumina).
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were clustered and sequenced at 2×150 bp on a NovaSeq 6000 System using the NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles; Illumina).
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bioRxiv - Cell Biology 2024Quote: ... After 2-3 passages in complete DMEM with 10% FBS gDNA was extracted to confirm the genotype by Illumina amplicon sequencing and live cell microscopy was performed.
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bioRxiv - Microbiology 2021Quote: ... Samples were pooled for RNAsequencing of 4 nM of total cDNA and sequencing was performed using a NextSeq 500 Instrument (Illumina Inc San Diego, CA).
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bioRxiv - Developmental Biology 2022Quote: ... 75bp single end sequencing was carried out on 4-6 libraries / genotype using Illumina NextSeq500 High output mode and v2.5 chemistry (Illumina Protocol 15046563 v02, Mar 2016) to collect >25M reads per sample.
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bioRxiv - Cell Biology 2024Quote: ... Nuclei were pelleted by centrifugation at 2500g for 10 min at 4°C and resuspended in 25 µL of 2x TD Buffer (Illumina Cat #FC-121-1030), containing 8 µL of Tn5 Transposes (Illumina Cat #FC-121-1030 ...
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bioRxiv - Cancer Biology 2021Quote: ... cells were lysed for 5 min followed by transposase reaction and library amplification using Nextera DNA Library Prep Kit (Illumina, California, USA). Libraries were then size-selected (240-360 bp ...
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bioRxiv - Cancer Biology 2022Quote: ... Single-end sequencing (5’ end, 75 bp) was performed at the Cornell Biotechnology Research Center using the NextSeq500 (Illumina, San Diego, CA) platform ...
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bioRxiv - Genomics 2021Quote: ... ChRO-seq libraries were sequenced (5′ single end; single-end 75×) using the NextSeq500 high-throughput sequencing system (Illumina, San Diego, CA) at the Cornell University Biotechnology Resource Center.
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bioRxiv - Genomics 2020Quote: ... using 5% PhiX without dark cycles (n = 11) or 10-20% PhiX with 7 dark cycles (protocol provided by Illumina, n = 49). A maximum of 12 samples were pooled in one sequencing run resulting in 19.05 million [17.05 – 21.72] single-end reads per sample on average (supplementary table 3).
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Activation of XBP1s attenuates disease severity in models of proteotoxic Charcot-Marie-Tooth type 1BbioRxiv - Neuroscience 2024Quote: ... S63del and S63del/Xbp1SC-KO mice using the Zymo RNA Clean & Concentrator-5 (#R1013) and sent to Genewiz (South Plainfield, NJ) for library preparation after PolyA selection and Illumina sequencing (Illumina HiSeq 2x150bp). Illumina sequencing data were mapped to the GRCm38/mm10 genome using the STAR aligner.35 Data were analyzed using DESeq2 to determine differentially regulated genes (p-value < 0,5).36 RNA-seq data are deposited in NCBI GEO under accession number GSE252089.
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bioRxiv - Physiology 2024Quote: ... tagmented DNA was amplified by PCR in a reaction mix (5 µL DNA, 2.5 µL of 25 μM forward primer (Nextera/Illumina i5 adaptors (Illumina)) ...
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bioRxiv - Genomics 2023Quote: ... Trimmomatic version 0.39 was employed to trim reads after a quality drop below a mean of Q15 in a window of 5 nucleotides and keeping only filtered reads longer than 15 nucleotides (Trimmomatic37: a flexible trimmer for Illumina sequence data). Reads were aligned versus Ensembl mouse genome version mm10 (Ensembl release 101 ...
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bioRxiv - Genomics 2022Quote: ... ChRO-seq libraries were sequenced (5′ single end; single-end 75×) using the NextSeq500 high-throughput sequencing system (Illumina, San Diego, CA) at the Cornell University Biotechnology Resource Center ...
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bioRxiv - Genomics 2024Quote: ... Libraries with 5% PhiX spike-in were sequenced on an Illumina NextSeq 2000 sequencer with P3 200 cycles kits (Illumina cat. #20040560) as paired-end ...
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bioRxiv - Molecular Biology 2024Quote: ... purified and ligated to 3′ and 5′ RNA adapters derived from TruSeq Small RNA Library Preparation Kit (Illumina, San Diego, CA, USA). Small RNA libraries were created using TruSeq Small RNA Library Preparation Kit (Illumina ...
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bioRxiv - Immunology 2021Quote: The purified amplicons were constructed into PE 2*300 libraries according to the Illumina MiSeq platform (Illumina, San Diego, USA) standard operating protocols ...
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bioRxiv - Microbiology 2021Quote: ... All samples were pooled at an equimolar concentration for paired end 2 × 300 bp sequencing via the MiSeq system (Illumina) using the MiSeq Reagent Kit v3 (600 cycles) ...
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bioRxiv - Genetics 2021Quote: ... Libraries were sequenced by NextSeq 550 High Output with 21 bp for read 1 and 72 bp for read 2 (Illumina). Sequenced reads were aligned using STAR (v2.7.6a ...
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bioRxiv - Microbiology 2020Quote: ... pooled with 1% denatured PhiX DNA (sequencing control) and sequenced in a MiSeq platform (2× 251 cycles paired-end run; Illumina). New PCR reactions using combinations of the primers described above were carried out to cover regions with low coverage for each sample ...
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bioRxiv - Genomics 2020Quote: ... Poly-A-enriched RNA was used to prepare libraries with TruSeq RNA Sample Preparation kit v2 y v4 (ref. RS-122-2001/2, Illumina) according to instructions from manufacturer followed by single-end (run1 ...
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bioRxiv - Developmental Biology 2021Quote: ... Long mRNA libraries (2 replicates per time-point) were built using the TruSeq Stranded mRNA HT Sample Prep Kit (Illumina). Library concentration was assessed for all libraries using the Qubit fluorimetric system (Invitrogen ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries were pooled in equimolar ratios and sequenced in a single lane of 2 x150 paired-end sequencing on an Illumina NovaSeq 6000 (Illumina).
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bioRxiv - Evolutionary Biology 2021Quote: ... Samples were sequenced on an Illumina HiSeq 4000 producing 2×150 bp paired-end reads (Illumina, San Diego, CA, USA) at Novogene (Sacramento ...
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bioRxiv - Genomics 2020Quote: ... Paired-end read sequencing (2×150 bp) was performed on the Illumina HiSeq X (Illumina, Inc., San Diego, CA, USA) using the Chromium library.
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bioRxiv - Bioengineering 2020Quote: ... The barcoded amplicon samples were then sent to the UCLA Technology Center for Genomics & Bioinformatics for multiplex sequencing with 2 x 300 paired-end configuration in a single-lane flow cell of MiSeq instrument (Illumina). Fastq paired-end raw data were filtered ...
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bioRxiv - Genomics 2021Quote: ... Paired-end sequencing was completed using NextSeq 500/550 300-cycle High-Output Kits v 2.5 (Illumina; 2 × 150 cycles). High-Output kit used for the generation of the NextSeq data allows for over 25 times more sequence data to be generated compared to MiSeq v2 sequencing (800M versus 30M paired reads ...
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bioRxiv - Systems Biology 2020Quote: ... then performed paired-end sequencing of these libraries (38 cycles read 1 + 37 cycles read 2) on a NextSeq 500 (Illumina). After sequencing ...
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bioRxiv - Genomics 2020Quote: PDT and ATAC libraries were pooled and paired-end sequenced (2 x 34 cycles) using Nextseq High Output Cartridge kits on a Nextseq 550 machine (Illumina). Raw sequencing data were demultiplexed with CellRanger-ATAC mkfastq ...
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bioRxiv - Genomics 2021Quote: ... ChIP-seq libraries were prepared using the ThruPLEX DNA-seq Kit (Rubicon) and sequenced paired-end 2 x 100bp on the HiSeq 2500 (Illumina).
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bioRxiv - Cancer Biology 2021Quote: ... 10 cycles per index and 120 cycles for read 2 on a NextSeq 500/550 High Output Kit v2.5 (Illumina, 20024907).
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bioRxiv - Systems Biology 2021Quote: ... NGS was performed on a final adjusted library pool using the paired-end 300-cycle NovaSeq 6000 S2 XP Reagent Kit (2 × 150 bp) on a NovaSeq instrument (both Illumina) per the manufacturer’s instructions ...