Labshake search
Citations for Illumina :
1051 - 1100 of 1102 citations for Small Airway Epithelial Cell since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: ... The PCR products (4 nM from every single cell) were treated with the Miseq Reagent Kit v2 50 Cycles (Illumina KK, Tokyo, Japan) and sequenced by the MiSeq sequencer (26 bp ...
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bioRxiv - Neuroscience 2021Quote: ... The 3’ gene expression libraries and HTO sequencing libraries were pooled and sequenced at an approximate depth of 50,000 reads per cell for the 3’ gene expression libraries and 5,000 reads for HTO libraries using the NovaSeq S1 (Illumina, San Diego, CA, USA) flow cells.
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bioRxiv - Immunology 2021Quote: ... The libraries were loaded onto a flow cell and subjected to paired-end sequencing on a HiSeq 2000 system (Illumina, San Diego, CA).
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were pooled for even coverage per cell and were sequenced at the CHLA Center for Personalized Medicine Molecular Genomics Core on the NextSeq 550 (Illumina, San Diego, CA) with 26bp sequencing for Read1 ...
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bioRxiv - Developmental Biology 2024Quote: ... library construction was immediately carried out using a Chromium Single Cell 3’ Reagent Kit (Version 3) and sequenced on an Illumina HiSeq 4000 or an Illumina NextSeq2000 (Illumina, cat no. 20040559) by the Technion Medicine Faculty Azrieli-Technion Genomics Center ...
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bioRxiv - Immunology 2023Quote: ... scRNA-seq was completed at Stanford Functional Genomics Facility (SFGF) using the Chromium Single Cell Gene Expression kit (10X Genomics, CA, USA) and Illumina Novaseq (Illumina Inc, CA, USA) sequencer according to manufacturer’s protocols.
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bioRxiv - Molecular Biology 2023Quote: ... and the pooled library (from 27 RNA samples) was loaded to an SP flow cell and sequenced on the NovaSeq 6000 platform (Illumina; San Diego, CA) with 2 x 150 bp paired-end sequencing ...
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bioRxiv - Genomics 2022Quote: ... 50,000 cells were resuspended in TD buffer for a 1hr incubation at 37C with TDE1 (Nexetra DNA Library Prep Kit; Illumina, San Diego, CA). Remaining steps of library prep were performed as published by Buenrostro et al ...
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bioRxiv - Evolutionary Biology 2024Quote: Next Generation Sequencing was performed at either Psomagen (Rockville, MD) or at the Translation Genomics Research Institute (Phoenix, AZ) on patterned flow cells (either an Illumina HiSeqX or NovaSeq) using 2 x 150 base pair paired end reads ...
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bioRxiv - Microbiology 2024Quote: ... Metagenome sequencing was performed in two lanes of a NovaSeq S4 flow cell in 2×150bp paired-end format on a NovaSeq 6000 (Illumina, San Diego, USA). Raw sequencing data is available on the NCBI SRA (BioProject PRJNA974462).
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bioRxiv - Cell Biology 2020Quote: ... RNAseq of cultured cells was conducted by the Weill Cornell Medical College Genomics Core using a NovaSeq 6000 system (Illumina, San Diego, CA, USA) with 50bp paired end reads ...
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bioRxiv - Genomics 2019Quote: ... which does not depend on the accuracy of library dilution in the case of unordered cells (similar to, for example, Illumina MiSeq or HiSeq 2500). The nanoballs are loaded using a DNB Loader ...
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bioRxiv - Genomics 2020Quote: Total RNA was extracted from Epstein–Barr-virus-transformed lymphoblastoid cell lines (LCLs) by following the Illumina TruSeq v2 RNA Sample Preparation protocol (Illumina, Inc., San Diego, CA) by the Department of Genetic Medicine and Development at the University of Geneva ...
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bioRxiv - Microbiology 2021Quote: ... Libraries were then sequenced on a NovaSeq 6000 instrument with a SP flow cell (2 x 250 bp) (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Cancer Biology 2020Quote: ... and poly-A sequencing libraries (HE2.1 and TIVE cells) were generated using the TruSeq RNA Sample Prep Kit (Illumina, catalog no. FC-122-1001).
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bioRxiv - Microbiology 2021Quote: ... Sequencing was carried out using the Illumina technology using a standard flow cell and 500 cycle v2 reagent cartridge (Illumina Inc., Hayward, California, USA).
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bioRxiv - Biochemistry 2021Quote: ... Amplicons containing the mutagenized regions were prepared from each cellular isolate and sequenced using paired end reads on a 600 cycle Illumina MiSeq cell (Illumina Inc., San Diego, CA) to a final depth of ~2 million reads per amplicon/ isolate ...
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bioRxiv - Cancer Biology 2021Quote: ... Libraries from 864 cells with unique barcodes were combined and sequenced with a NextSeq 500 sequencer (#SY-415-1001, Illumina, San Diego, California, USA).
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bioRxiv - Cancer Biology 2022Quote: ... 50.000 MDA-MB-231 cells infected with shControl (C) or shLOXL2 (KD) were collected and treated with transposase Tn5 (Nextera Tn5 Transposase, Illumina Cat #FC-121-1030). DNA was purified using AMPure XP beads to remove big fragments (0.5x beads ...
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bioRxiv - Cell Biology 2019Quote: ... Libraries were barcoded and sequenced on a NextSeq Series Sequencing System (HUJI Center for Genomic Technologies) using Illumina flow cell (Illumina 500 NextSeq High Output v2 Kit, FC-404-2005; Illumina, San Diego, CA, USA). The sequencing data were uploaded to the usegalaxy.org (Afgan et al. ...
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bioRxiv - Microbiology 2019Quote: ... multiplexed on the lanes of HiSeq Rapid PE v2 Flow cells for generating paired reads of 100 bases on an Illumina HiSeq 2500 sequencer (Illumina, San Diego, CA, USA).
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bioRxiv - Neuroscience 2021Quote: ... Libraries were pooled and loaded for clustering on 1 lane of a Single-read Illumina Flow cell (for an average of 50 million of reads per library) (Illumina, San Diego, CA, USA). Reads of 100 bases were generated using the TruSeq SBS chemistry on an Illumina HiSeq 4000 sequencer (Illumina ...
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bioRxiv - Immunology 2021Quote: ... The V(D)J enriched library was then constructed via Chromium Single Cell 5’ Library Construction Kit (10x Genomics Cat#1000020) and libraries were sequenced in a NovaSeq™ 6000 Sequencing System (Illumina, San Diego, CA). V(D)J sequences were collapsed using Cell Ranger ...
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bioRxiv - Genomics 2021Quote: ... we had genomic DNA from the cell line HCT116 profiled (Princess Margaret Genomics Centre, Toronto, ON, Canada) using the Infinium MethylationEPIC BeadChip array (Illumina, San Diego, CA, USA). We prepared these samples as technical replicates of the HCT116 genomic DNA that we later spiked with 0.01 ng spike-in control ...
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bioRxiv - Microbiology 2021Quote: ... the amplicons were purified and sequenced on a MiSeq flow cell using Reagent Kit v3 and 2×300 pair-end reads (Illumina Inc., San Diego, USA) according to the manufacturer’s instructions at the Göttingen Genomics Laboratory (G2L ...
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bioRxiv - Cancer Biology 2024Quote: ... The pooled libraries were sequenced with paired-end 250 bp reads in a single flow cell on an Illumina MiSeq (Illumina Inc., San Diego, CA) in case one and an Illumina HiSeq 4000 in case two ...
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bioRxiv - Genomics 2023Quote: ... where all 184 samples were merged into one flow cell and sequenced using 100bp single-end mRNA sequencing (RNA-seq) on Illumina Hiseq 2500 (Illumina, San Diego, CA, USA).
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bioRxiv - Cancer Biology 2024Quote: ... Quantitated libraries were further diluted to 2.5 nM and subject to clustering by a cBot Cluster Generation System on four HiSeq4000 flow cells (Illumina Inc. San Diego, CA, USA), according to the manufacturer’s instructions ...
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bioRxiv - Immunology 2024Quote: ... The libraries were then pooled at 5nM and sequenced on an Illumina NextSeq 2000 instrument at a 600pM input and 2% PhiX spike in using a P3 100 cycle flow cell (Illumina, San Diego, CA, USA) resulting in 36000-58000 reads per cell.
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bioRxiv - Immunology 2024Quote: ... China), using Chromium Single Cell 3’ Reagent Kits v2 (from 10x Genomics, Pleasanton, CA, USA) and NovaSeq 6000 System (Illumina, San Diego, CA, USA) respectively ...
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bioRxiv - Microbiology 2023Quote: ... Samples were then sequenced in a 2 × 75 bp arrangement with a High Output Flow Cell on an Illumina NextSeq 550 system (Illumina, San Diego, CA, USA) at the LuxGen sequencing platform (Dudelange ...
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bioRxiv - Cancer Biology 2023Quote: 0.5×105 MIA PaCa-2 cells for each treated condition/replicate infected was collected and treated with transposase Tn5 (Nextera Tn5 Transposase; Illumina Cat #FC-121-1030). DNA was purified using AMPure XP beads to remove large fragments (0.5 × beads ...
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bioRxiv - Bioengineering 2023Quote: ... Sequencing was performed in paired-end mode with HighOutput flow cell (read 1: 28 cycles and read 2: 90 cycles) and a NextSeq 550 sequencer (Illumina, San Diego, CA, USA) at the Transcriptome Core Facility of the Institute in Regenerative Medicine and Biotherapy ...
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bioRxiv - Neuroscience 2024Quote: ... Pooled libraries were paired-end sequenced on a High Throughput Run Mode flow cell with the V4 sequencing chemistry on an Illumina HiSeq 2500 platform (Illumina, Inc., San Diego, CA) following Illumina’s recommended protocol to generate paired-end reads of 126-bases in length.
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bioRxiv - Developmental Biology 2024Quote: ... Pooled libraries with unique 5′ and 3′ index adapter pairs were sequenced on an NextSeq 2000 P3 flow cell (Illumina®: San Diego, CA) to generate 66M (±12M ...
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bioRxiv - Microbiology 2024Quote: ... Metagenomic libraries were prepared and sequenced on a NovaSeq 6000 instrument with a S4 flow cell (300 cycles) (Illumina Inc, San Diego, CA, USA) as previously detailed (15) ...
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bioRxiv - Genomics 2020Quote: ... We run the final pooled library at a concentration of 1.8 pM on a mid-output flow cell (NSQ® 500 Mid Output KT v2 300 cycles; Illumina Catalogue No. FC-404-2003) according to manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2020Quote: ... sequencing was run in the rapid run flow cell and paired-end sequenced (read 1 – 26 bp, read 2 – 100 bp) on a HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Molecular Biology 2022Quote: The manually prepared K562 single cells were pooled and sequenced using 2×75 bp sequencing on an Illumina NextSeq 500 (Illumina Inc., San Diego, CA, USA). Base calling was done by Illumina NextSeq Control Software (NCS ...
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were run in the Rapid Run flow cell and sequenced with paired-end sequencing (2×76 bp) on HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Evolutionary Biology 2020Quote: To reduce the effects of index hopping observed on Illumina patterned flow cell technology (including HiSeq 4000, HiSeq X, and Novaseq machines) (Illumina, 2017; Sinha et al., 2017), we devise a nested unique-dual-indexing approach ...
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bioRxiv - Cancer Biology 2020Quote: ... the genomic DNA extracted from whole mononuclear cells from fresh BM aspirates underwent amplicon-based targeted NGS analysis on a MiSeq sequencer (Illumina Inc., San Diego, CA, USA), as described previously52 ...
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bioRxiv - Cancer Biology 2021Quote: ... Libraries were run in the rapid run flow cell and were paired-end sequenced (2×76bp) on HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were run in the Rapid Run flow cell and paired-end sequenced (2×76 bp) with the HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Microbiology 2022Quote: ... Fragmented and indexed samples were run on the sequencer using a Micro flow cell with the MiSeq Reagent Kit v2 (Illumina; 150-bp paired-end reads) following Illumina’s recommended denaturation and loading procedures ...
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bioRxiv - Cancer Biology 2023Quote: ... The libraries were run in the rapid run flow cell and were paired end sequenced (2×76bp) on HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene libraries were then sequenced on a NovaSeq 6000 instrument with a SP flow cell (2 × 250 bp) (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Microbiology 2023Quote: ... Fragmented and indexed samples were run on the sequencer using a Micro flow cell with the MiSeq Reagent Kit v2 (Illumina; 150-bp paired-end reads) following Illumina’s recommended denaturation and loading procedures.
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bioRxiv - Cancer Biology 2024Quote: ... to generate single cell mRNA libraries and then sequenced across six lanes on an Illumina X ten or NovaSeq 6000 system (Illumina, Inc., San Diego, California, US). Raw sequencing data were aligned to the GRH38 reference genome using cellranger (10× Genomics ...
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bioRxiv - Genomics 2020Quote: ... The pooled library was run at a final concentration of 1.8 pM on an Illumina NextSeq500 instrument using a mid-output flow cell (NSQ® 500 Mid Output KT v2 300 cycles; Illumina Catalogue No. FC-404-2003) following the Illumina recommended denaturation and loading parameters ...