Labshake search
Citations for Illumina :
1001 - 1050 of 1102 citations for Small Airway Epithelial Cell since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... Each library was sequenced using 151 base-length read chemistry on a paired-end flow cell on the Illumina NovaSeq6000 (Illumina, USA). After Illumina sequencing ...
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bioRxiv - Microbiology 2023Quote: ... transcriptomic libraries were generated and sequenced on an Illumina NovaSeq 6000 (S4 flow cell, 100bp paired-end; Illumina, San Diego, CA). Raw data is available in the NCBI SRA under the accession number PRJNA857920 ...
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bioRxiv - Genomics 2024Quote: 1 ng of psoralen pull-down DNA (or corresponding Input DNA from the same cells without pull-down) was used to prepare sequencing libraries using a Nextera XT library prep kit (Illumina, Inc) according to the manufacturer protocol ...
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bioRxiv - Molecular Biology 2024Quote: ... validated for activity in a corresponding assay and three clones of each cell line were subjected to a genotyping array screening using a Infinium Global Screening Array-24 Kit (Illumina, #20030770) to check for chromosomal rearrangements in iPSCs clones ...
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bioRxiv - Immunology 2024Quote: ... 75 base pair Next Generation Sequencing was done on a P2 flow cell using the NextSeq 2000 (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2024Quote: ... library was sequenced using 101 base-length read chemistry in a paired-end flow cell on the Illumina sequencer (Illumina, USA).
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bioRxiv - Evolutionary Biology 2024Quote: ... Each library was sequenced using 100 base-length read chemistry on a paired-end flow cell on the Illumina HiSeq2000 (Illumina, USA).
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bioRxiv - Synthetic Biology 2024Quote: ... and cells were harvested after three days for Sanger sequencing (Genewiz) or high throughput sequencing (Quintara Biosciences or in house Illumina miSeq). Spacer sequences of tested loci are found in Supplementary table 7.
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bioRxiv - Cancer Biology 2021Quote: ... cells were lysed for 5 min followed by transposase reaction and library amplification using Nextera DNA Library Prep Kit (Illumina, California, USA). Libraries were then size-selected (240-360 bp ...
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bioRxiv - Molecular Biology 2021Quote: ... Barcoded treatment and control replicate libraries were hybridized across four lanes of two S4 flow cells for cBot (Illumina, San Diego, CA) cluster generation and sequencing (paired-end ...
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bioRxiv - Systems Biology 2019Quote: ... denatured in NaOH and combined with HT1 plus a 1% PhiX spike at a final running concentration of 10pM.The flow-cell was clustered using HiSeq PE Cluster Kit v3 (Illumina, PE-401-3001) utilising the Illumina PE HiSeq Cluster Kit V3 cBot recipe V8.0 method on the Illumina cBot ...
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bioRxiv - Cancer Biology 2020Quote: ... MCF10A libraries from three biological replicates of each cell type were prepared using NEBNext® Ultra(tm) RNA Library Prep Kit (Illumina®) and sequenced on HiSeq X by Annoroad Gene Technology Ltd ...
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bioRxiv - Cancer Biology 2020Quote: ... A total of 12 libraries from persistently infected cells and control were generated and sequenced using HiSeq2000 Illumina platform following manufacturer’s instruction (Illumina Inc., San Diego).
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bioRxiv - Molecular Biology 2022Quote: ... The supernatant was discarded and the pellet (cell nuclei) was resuspended in 50 uL transposition mix (50% v/v 2X Tagment DNA (TD) Buffer (Illumina, Cambridge, UK), 32% v/v PBS ...
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bioRxiv - Genomics 2022Quote: ... Samples were then mixed and sequenced to target >20,000 reads per cell for gene expression libraries and >5,000 reads per cell for TCR libraries using NovaSeq S4 or HiSeq 4000 (Illumina. San Diego, CA) with at least 2×100 BP coverage (Extended Data Table 1).
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bioRxiv - Molecular Biology 2020Quote: Next-generation sequencing datasets measured in RNA-Seq experiments with lung cells (GSE147507: Illumina NextSeq 500; GSE146482: Illumina NovaSeq 6000; GSE85121: Illumina HiSeq 2500) were downloaded from NCBI GEO (Table 1 ...
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bioRxiv - Cell Biology 2022Quote: ... All four samples underwent 150 base pair (bp) paired-end read sequencing on one lane of an S4 flow cell (Illumina NovaSeq 6000) to a minimum depth of 500 million reads per sample (Source BioScience ...
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bioRxiv - Immunology 2020Quote: ... 0.1 ng of cDNA from each cell on the plate was individually tagmented using the Nextera XT kit (Illumina, San Diego, CA) in a final volume of 5 µl ...
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bioRxiv - Genetics 2021Quote: ... and prepared bar-coded cDNA libraries for sequencing on an S1 flow cell on the NovaSeq 6000 platform (Illumina, San Diego, CA) as described previously21.
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bioRxiv - Immunology 2020Quote: ... The cell pellets were resuspended in 50 μl transposition mix (25 μl 2X TD buffer, 2.5 μl transposase (Illumina, FC-121-1030), 16.5 μl PBS ...
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bioRxiv - Cell Biology 2021Quote: ... Libraries were diluted to a final concentration of 2.8 pM in HT1 buffer (supplemented with the kit) and loaded on 75-cycle high-output flow cells (Illumina, FC-404-2005) and sequenced on a NextSeq 550 (Illumina) ...
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bioRxiv - Molecular Biology 2020Quote: ... The cell pellet was resuspended in 50 μl transposition mix (25 μl 2X TD buffer, 2.5 μl transposase (Illumina, FC-121-1030), 16.5 μl PBS ...
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bioRxiv - Genetics 2022Quote: ... gDNA of 293T cells with or without transfection was tested by WGS using the Illumina NovaSeq platform (Illumina, San Diego, CA, USA).
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bioRxiv - Physiology 2022Quote: ... Quantified libraries were pooled and sequenced on an Illumina NextSeq using a high capacity 75 read flow cell (Illumina, San Diego, CA) following the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2024Quote: The Total RNA Library was prepared using the Illumina NovaSeq (S4) 300 cycle flow cell and reagent kit (Illumina, San Diego, CA). The high-throughput sequencing strategy included 300 cycles and a read length of paired-end 150 base pairs ...
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bioRxiv - Genomics 2023Quote: HMW DNA from 1.5 x 106 cells was used to generate Illumina libraries with the Nextera XT DNA Library Preparation kit (Illumina FC-131-1024) and Illumina DNA PCR-Free Library Prep ...
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bioRxiv - Cancer Biology 2024Quote: ... Prepared libraries were subjected to high throughput sequencing using Illumina NovaSeq 6000 system using S4 flow cell (Illumina, San Diego, CA, USA) and v1.5 chemistry ...
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bioRxiv - Bioengineering 2024Quote: ... The resulting cell nuclei were subjected to incubation for 30 min with Tagment DNA TDE1 Enzyme and Buffer (Illumina, #FC-121-1030). This step fragmented the chromatin and inserted sequencing adapters ...
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bioRxiv - Genomics 2023Quote: ... Two biological replicates of 7.5 × 104 cells for each condition were then isolated for direct processing with Nextera Tn5 enzyme (Illumina, FC-131-1096). Samples were treated as previously described (77 ...
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bioRxiv - Bioengineering 2023Quote: ... Libraries were pooled and paired-end sequenced at 100bp per end with an additional 10bp of index reads on a NovaSeq S4 flow cell (Illumina, Novaseq 6000).
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bioRxiv - Genomics 2022Quote: ... we generated a combination of noisy ONT sequencing (MinION R.9.4.1 flow cells with the LSK-109 ligation library prep kit) and Illumina sequencing (PE 150 bp, ∼49x coverage; Illumina NovaSeq 6000). Based on published ONT benchmarking (https://nanoporetech.com/accuracy) ...
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bioRxiv - Microbiology 2023Quote: ... These products were pooled into equal molar proportions and sequenced on Illumina MiSeq V2 standard flow cell (Illumina, San Diego, CA, USA) for 2*300 bp pair-end chemistry according to the manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: Libraries were sequenced at between 40,000 and 50,000 fragment reads per cell following Illumina’s standard protocol using the Illumina cBot and HiSeq 3000/4000 PE Cluster Kit (Illumina, San Diego, CA). The flow cells were sequenced as 100 × 2 paired end reads on an Illumina HiSeq 4000 HD using HiSeq 3000 / 4000 sequencing kit and HCS v3.4.0.38 collection software ...
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bioRxiv - Microbiology 2024Quote: ... 100 bp paired end sequencing was performed on Illumina NovaSeq 6000 platform using S4 flow cell (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Immunology 2024Quote: ... so the remaining fifteen sublibraries were ultimately sequenced on a NovaSeq S4 instrument at approximately 30,000 reads per cell (Illumina; Chan Zuckerberg Biohub).
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bioRxiv - Developmental Biology 2024Quote: ... Single cell libraries were prepared by the University of Michigan Advanced Genomics Core and sequencing was performed using the 10X Genomics Chromium platform using manufacturer’s protocol for 10x Single Cell Expression 3’ and sequenced on the NovaSeq (S4) 300 cycle (Illumina, San Diego, CA). Sequencing outputs were demultiplexed using 10x Genomics Cell Ranger 7.1.0 software and FASTQ files were aligned to the Genome Reference Consortium Mouse Build 38 ...
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bioRxiv - Cell Biology 2020Quote: ... were prepared from HepG2 cell samples using 200–500 ng of total RNA following the manufacturer’s instructions for the TruSeq RNA kit (Illumina, San Diego, CA, USA). With this kit ...
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bioRxiv - Physiology 2019Quote: ... DNA was amplified using fusion primers designed against the surrounding conserved regions that are tailed with sequences to incorporate flow cell adapters and indexing barcodes (Illumina, San Diego, CA). Each sample was PCR amplified with two differently barcoded V4-V5 fusion primers and were advanced for pooling and sequencing ...
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bioRxiv - Immunology 2021Quote: ... Cells were washed once with PBS before DNA transposition was performed with the Nextera DNA Library Prep Kit (Illumina, Cat. #FC-121-1031). Per sample ...
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bioRxiv - Neuroscience 2020Quote: ... 50bp RNA-seq of IP fractions and total homogenate from 5 replicates per cell type (20 samples total) was performed on a single lane of a HiSeq 3000 (Illumina, San Diego, California), yielding ∼350M reads ...
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bioRxiv - Microbiology 2020Quote: ... The library was then sequenced by Illumina Miseq at Michigan State University (Michigan, USA) using a standard flow cell and 500 cycle v2 reagent cartridge (Illumina Inc., Hayward, California, USA).
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bioRxiv - Systems Biology 2021Quote: Single nuclear 3’ RNA-sequencing was performed at the Indiana University Center for Medical Genomics Core using the Chromium single cell system version 3 (10x Genomics, San Francisco, CA) and the NovaSeq6000 sequencer (Illumina, San Diego, CA). Cell Ranger 4.0 was utilized to generate sample-specific FASTQ files and reads were aligned to the mm10 reference genome using STAR ...
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bioRxiv - Cancer Biology 2020Quote: ... All the cell line mRNA libraries for sequencing were prepared according to the TruSeq Stranded Total RNA Library Prep Kit (Illumina, #RS-122-2201). Sequencing (75 bp ...
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bioRxiv - Developmental Biology 2022Quote: ... Cells were used for the preparation of single-cell libraries using the 10X Genomics Chromium system (10X Genomics, Pleasanton, CA) and sequenced with an Illumina NovaSeq 6000 (Illumina, San Diego, CA) by the KUMC Genome Sequencing Facility (Kansas City ...
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bioRxiv - Developmental Biology 2021Quote: ... Next generation sequencing of equimolar pools of cDNA libraries was performed by loading a paired-end 75bp rapid flow cell to generate a minimum of 25M raw reads on a HiSeq 2500 sequencing platform (Illumina, San Diego, CA). Raw sequencing data (submitted to Gene Expression Omnibus ...
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bioRxiv - Molecular Biology 2022Quote: ... RIP-seq libraries were pooled and sequenced on a MiSeq 50 base pair single-read flow cell using v2 reagents (Illumina, San Diego, CA). SIR libraries were also pooled and sequenced on either a HiSeq2500 high output 100 base pair paired-end flow cell using TruSeq SBS v3 reagents or on a NextSeq500 high output 75 base pair single-read flow cell using v2 reagents (Illumina ...
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bioRxiv - Molecular Biology 2022Quote: ... SIR libraries were also pooled and sequenced on either a HiSeq2500 high output 100 base pair paired-end flow cell using TruSeq SBS v3 reagents or on a NextSeq500 high output 75 base pair single-read flow cell using v2 reagents (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2020Quote: ... Libraries from 1000-4000 cells (depending on the sample) were sequenced in paired end mode on a HiSeq 4000 instrument (Illumina, San Diego, CA) at an average depth of 174,446 reads per cell (for V2/V3) ...
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bioRxiv - Cancer Biology 2021Quote: ... scRNA-libraries were sequenced on a NextSeq 500/550 High Output Flow Cell v2.5 (150 Cycles) on an Illumina NextSeq 550 (Illumina, San Diego, CA, USA). The bcl2fastq function and the cell ranger (v3.0 ...
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bioRxiv - Immunology 2020Quote: ... University of Edinburgh using the NextSeq 500/550 High-Output v2 (150 cycle) Kit (# FC-404-2002) with a High Out v2.5 Flow Cell on the NextSeq 550 platform (Illumina Inc, #SY-415-1002). 8 libraries were combined in an equimolar pool based on the library quantification results and run across one High-Output Flow Cell ...