Labshake search
Citations for Illumina :
951 - 1000 of 1102 citations for Small Airway Epithelial Cell since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: ... The transposon-specific primer was designed to include (from 5’ to 3’): (i) the “P5” or “P7” flow-cell annealing sequence (Illumina), (ii ...
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bioRxiv - Molecular Biology 2024Quote: ... and clustered on an Illumina Novaseq 6000 S4 flow cell followed by 150bp paired-end sequencing with inclusion of 10-15% spike-in PhiX Control v3 library (Illumina). Controlled access to DNase-seq ...
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bioRxiv - Genomics 2024Quote: All samples were processed using the 10x Genomics Chromium 3’ Single Cell Protocol and sequenced using NovaSeq 6000 S1 (Illumina). For the first sample containing NSC pools 1.1 and 1.2 ...
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bioRxiv - Cell Biology 2024Quote: ... RNA from SCC25 cells and clones was used to generate RNA-sequencing libraries using stranded Total RNA prep with Ribo-zero plus (Illumina). Samples were multiplexed and sequenced on a NovaSeq 6000 SP/S1 PE 150 ...
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bioRxiv - Developmental Biology 2024Quote: ... and then 50 nucleotide paired-end DNA sequencing was completed on an Illumina NovaSeq 6000 system using a S1 flow cell (Illumina). Raw RNA-seq reads are available at the SRA (SAMN38284748-SAMN38284755).
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bioRxiv - Cancer Biology 2024Quote: ... Single cell gene expression libraries were generated using the 10X Genomics Chromium platform and sequenced on a NovaSeq 6000 (Illumina). Processing of scRNA-seq data was performed as follows ...
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bioRxiv - Developmental Biology 2024Quote: ... cells (sample of all leg disc cells) from three different replicates were sent to Heidelberg genomic platform EMBL for high-throughput mRNA sequencing (NextSeq 500/Illumina). They generated mRNA libraries with NEB RNA Ultra kit (New England Biolabs E7770L ...
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bioRxiv - Neuroscience 2024Quote: ... Single nuclei were isolated from frozen brain tissue using iodixanol-based density gradient centrifugation and submitted to UCLA Technology Center for Genomics and Bioinformatics for library preparation (via Chromium Single Cell 3’ v3 kit from 10x Genomics) and sequencing (via NovaSeq 6000 S2 platform from Illumina). Cell Ranger (10x Genomics ...
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bioRxiv - Molecular Biology 2024Quote: ... Newborn and maternal samples were sequenced on separate flow cells (NextSeq 500/550 High Output Kit v2.5 75 Cycles, Illumina, 20024906) using 1600 pg/sample in the newborn cohort and ...
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bioRxiv - Microbiology 2024Quote: ... RNAs from the in vitro culture cells were purified with the same protocol (TRIzol) and sequenced with the same method (Illumina).
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bioRxiv - Immunology 2024Quote: ... Single-cell RNA libraries were prepared according to the 10x Genomics Chromium Single Cell 3′ Reagent Kits v2 User Guide and sequenced (paired-end) on a HiSeq 4000 (Illumina).
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bioRxiv - Cancer Biology 2021Quote: ... The INA-6 cells were sequenced (18 million reads per sample) using the TruSeq Stranded mRNA library preparation kit from Illumina (#20020595) followed by 75bp single read sequencing on the Illumina Hiseq 4000 next machine ...
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bioRxiv - Immunology 2021Quote: ... The amplified libraries were hybridized to the Illumina flow cell and sequenced using the NextSeq 550 sequencer (Illumina, San Diego, CA). Single end reads of 75nt were generated for each sample ...
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bioRxiv - Neuroscience 2020Quote: ... Sequencing libraries (1.3 nM) were chemically denatured and applied to an Illumina NovaSeq flow cell using the NovaSeq XP chemistry workflow (Illumina-20021664). Following transfer of the flowcell to an Illumina NovaSeq instrument ...
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bioRxiv - Evolutionary Biology 2021Quote: ... libraries were sequenced using 100 base-length read chemistry in paired-end flow cell on the Illumina HiSeq2000 (Illumina®, USA).
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bioRxiv - Neuroscience 2020Quote: ... The cell solutions were immediately transferred to ice and transported to the Wellcome Trust Centre for Human Genetics (WTCHG) for scRNAseq via 10x genomics chromium (10x genomics, US) (Single Cell 3’ v3) and Illumina hiseq 4000 (Illumina, US). This approach achieved 66-72K mean reads per cell and a sequencing depth of 53-55% per cell before filtering.
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bioRxiv - Genomics 2020Quote: ... CNV analysis was performed on a combined cohort of 130 sequenced hESC lines and a control cohort consisting of 243 human samples from primary blood or lymphoblastoid cell lines (LCL) that had undergone WGS on the same platform (Illumina HiSeqX) and to similar depth as the hESC lines (Pato et al. ...
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bioRxiv - Cell Biology 2022Quote: ... Diluted libraries were multiplex-sequenced and run on a HiSeq 2000 Illumina platform in HiSeq Flow Cell v3 (Illumina Inc., USA) using TruSeq SBS Kit v3 (Illumina Inc. ...
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bioRxiv - Neuroscience 2021Quote: ... The amplified libraries were hybridized to the Illumina single end flow cell and amplified using the cBot (Illumina, San Diego, CA) at a concentration of 8 pM per lane ...
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bioRxiv - Genomics 2020Quote: ... The amplified libraries were hybridized to the Illumina single end flow cell and amplified using the cBot (Illumina, San Diego, CA). Single end reads of 100nt were generated for each sample using Illumina’s HiSeq2500v4.
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bioRxiv - Genomics 2020Quote: ... The amplified libraries were hybridized to the Illumina single end flow cell and amplified using the cBot (Illumina, San Diego, CA). Single end reads of 100nt were generated for each sample using Illumina’s HiSeq2500v4.
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bioRxiv - Molecular Biology 2021Quote: ... Libraries from knockout FL83B cells and their corresponding non-targeting controls were prepared with TruSeq Stranded mRNA Library Kit (Illumina, #20020595), pair-end sequencing was performed using the NovaSeq 6000 (Illumina) ...
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bioRxiv - Molecular Biology 2021Quote: Libraries from human liver tissue and wild type FL83B cells were prepared with TruSeq Stranded Total RNA Library Prep Gold (Illumina, #20020599), single-read sequencing was performed using the NextSeq 500 (Illumina) ...
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bioRxiv - Cancer Biology 2020Quote: ... The amplified libraries were hybridized to the Illumina single end flow cell and amplified using the cBot (Illumina, San Diego, CA). Single end reads of 75nt were generated for each sample using Illumina’s NextSeq55036.
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bioRxiv - Plant Biology 2020Quote: ... sequencing was performed with the Illumina NovaSeq 6000 system using S1 flow cell with lane divider (Illumina, San Diego, CA, USA). Read length for the paired-end run was 2 x 101 bp ...
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bioRxiv - Cancer Biology 2020Quote: ... and 2000 copies/cell yeast SUMO to each sample then proceed with rRNA removal Ribo Zero Gold kit (Illumina cat # MRZ11124C) according to manufacturer’s protocol ...
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bioRxiv - Cancer Biology 2022Quote: ... but from purified CLL cells (Miltenyi B-CLL Isolation kit) and sequenced on an Illumina HiSeq 4000 (Illumina, Hayward, CA, USA). miRNA data in the form of fastq were quality checked using FastQC ...
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bioRxiv - Microbiology 2020Quote: ... Short reads were obtained using NovaSeq6000 S2 Reagent Kit (300cycles) and S2 flow cell on a NovaSeq6000 (2×150-bp paired-end) system (Illumina, USA) at Eurofins Genomics GmbH ...
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bioRxiv - Zoology 2021Quote: ... We shipped the unfrozen DNA with freezer packs to the University of Oregon’s Genomics and Cell Characterization Core Facility (https://gc3f.uoregon.edu/) for 150bp single-end sequencing on an Illumina HiSeq 4000 (Illumina, San Diego, CA).
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bioRxiv - Developmental Biology 2019Quote: Single cell 3’ RNA-seq experiments were conducted using the Chromium single cell system (10x Genomics, Inc) and the NexSeq 500 sequencer (Illumina, Inc). Approximately 10,000 cells per sample were added to a single cell master mix ...
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bioRxiv - Synthetic Biology 2019Quote: ... The RNAseq data was generated on an Illumina NextSeq500 75 SE high-output flow-cell (Illumina, cat no. FC-404-2005). The run yielded approximately 550 million reads ...
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bioRxiv - Molecular Biology 2020Quote: The OmniATAC transposition reaction was performed with 50000 mES cells as previously described (Corces et al., 2017) using the Tagment DNA TDE1 Enzyme (Illumina, #20034197). DNA was purified using the PCR clean-up MinElute kit (Qiagen ...
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bioRxiv - Genomics 2020Quote: Whole-genome DNA methylation measurement was performed on DNA from purified CD4+ T cells using Infinium MethylationEPIC BeadChip (Illumina 850K array) by the Center for Applied Genomics Genotyping Laboratory at the Children’s Hospital of Pennsylvania ...
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bioRxiv - Genomics 2021Quote: ... Each library was sequenced using 100 base-length read chemistry on a paired-end flow cell on the Illumina HiSeq2000 (Illumina, USA).
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bioRxiv - Genomics 2021Quote: ... The libraries were sequenced using 251 base- length read chemistry in a paired-end flow cell on the Illumina HiSeq2500 sequencer (Illumina, USA).
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Altered TGFB1 regulated pathways promote accelerated tendon healing in the superhealer MRL/MpJ mousebioRxiv - Cell Biology 2021Quote: ... The amplified libraries were hybridized to the Illumina single end flow cell and amplified using the cBot (Illumina, San Diego, CA). Single end reads of 100nt were generated for each sample ...
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bioRxiv - Genetics 2019Quote: ... Equimolar amounts of each library were loaded on a Next-Seq Mid output flow cell cartridge (Illumina NextSeq 500/550 #20022409).
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bioRxiv - Neuroscience 2022Quote: ... We pooled up to 12 samples (with different barcodes) in one lane of a flow cell for sequencing (Illumina HiSeq 2500) and used a 150 bp paired-end read configuration ...
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bioRxiv - Developmental Biology 2022Quote: ... Then the cells were precipitated and kept on ice and subsequently resuspended in 25μl 2X Tagment DNA Buffer (Illumina Nextera kit), 2.5μl Transposase enzyme (Illumina Nextera kit ...
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bioRxiv - Systems Biology 2023Quote: ... centrifuged at 350g for 5 minutes and resuspended and put through a Flowmi™ strainer (before cell counts were carried out for sample preparation, see 10x Illumina Single Cell Library Preparation and RNA Sequencing).
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bioRxiv - Genomics 2022Quote: ... Each library was sequenced using 151 base-length read chemistry on a paired-end flow cell on the Illumina HiSeq4000 sequencing platform (Illumina, USA).
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bioRxiv - Cancer Biology 2024Quote: ... Then the scRNA-seq libraries were constructed by using the Chromium Next GEM Single Cell 3’ Reagent Kits v3 (10X Genomics, USA) and sequenced by using the sequencer Novaseq6000 (Illumina, USA). All procedures were following the manufacturer’s protocol.
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bioRxiv - Neuroscience 2024Quote: ... Sequencing of the 10x Genomics single-cell RNA-seq libraries was performed on an Illumina NovaSeq 6000 (Illumina, San Diego, CA) at the sequencing core facility of the Max Planck Institute for Molecular Genetics (Berlin ...
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bioRxiv - Neuroscience 2024Quote: ... Sequencing of the 10x Genomics single-cell ATAC-seq libraries was performed on an Illumina NovaSeq 6000 (Illumina, San Diego, CA) at by the sequencing core facility at the Max Planck Institute for Molecular Genetics (Berlin ...
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bioRxiv - Microbiology 2024Quote: ... Library preparation (using Ribozero plus) and paired end 50 bp sequencing (on an SP 100 Cycle Flow Cell v1.5 using an Illumina NovaSeq 6000) was conducted by the NYU Langone Genome Technology Center (available for download at) ...
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bioRxiv - Genomics 2024Quote: ... The final barcoded library was pooled on a quarter S4 flow cell in 2x150 bp paired-end mode on an Illumina NovaSeq sequencer (Illumina, USA). Hi-C library preparation and sequencing were done at the Norwegian Sequencing Centre (Oslo ...
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bioRxiv - Genomics 2023Quote: ... Each library was sequenced using 151 base-length read chemistry on a paired-end flow cell on the Illumina NovaSeq6000 (Illumina, USA). After Illumina sequencing ...
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bioRxiv - Molecular Biology 2023Quote: ... 1 x 105 mESCs and 5 x 104 S2 cells were resuspended in Tagment DNA Buffer and treated with 3 µL TDE1 Tagment DNA Enzyme (Illumina 20034197). After thorough mixing ...
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bioRxiv - Molecular Biology 2023Quote: ... A 1.4 nM pool of each QC passed RNA-seq library was sequenced by running a Single Read (SR) 100bp NovaSeq 6000 S2 flow cell on the NovaSeq 6000 Sequencing System (Illumina, Inc.). The fastq files were obtained by demultiplexing the bcl basecall files using the 1.8.4 version bcl2fastq script (Illumina ...
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bioRxiv - Cell Biology 2024Quote: ... libraries were sequenced on a High-output flow cell (400M clusters) using the NextSeq® 500/550 High Output 150 cycles kit (Illumina), in paired- end 76/76 nt mode ...