Labshake search
Citations for Illumina :
9101 - 9150 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2023Quote: ... raw binary base call (BCL) files were converted to FASTQ files using bcl2fastq (Illumina). All FASTQ files were processed using the nf-core/RNA-seq pipeline (55 ...
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bioRxiv - Immunology 2023Quote: ... The libraries were subsequently sequenced on a Novaseq S4 sequencer (Illumina) to generate fastqs with the following mean reads per cell ...
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bioRxiv - Microbiology 2023Quote: ... and sequencing was performed with the NextSeq 500 system (Illumina), generating 150 bp paired-end reads ...
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bioRxiv - Microbiology 2023Quote: ... and subjected to Illumina MiSeq 2 × 150 bp paired-end sequencing by Illumina MiSeq.
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bioRxiv - Cell Biology 2023Quote: cDNA libraries were prepared from 1 μg total RNA of each sample using the TruSeq Stranded mRNA Sample Prep Kit (Illumina, Inc., San Diego, CA, USA), according to the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2023Quote: ... and then aligned to the mouse genome using Top-Hat (Illumina) and fragments were assigned to genes using the FeatureCounts program (iCONICS core facility ...
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bioRxiv - Neuroscience 2023Quote: ... RNA samples with RQNs ranging from 8 to 10 were used for RNA library preparation with the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Microbiology 2023Quote: ... transcriptomic libraries were generated and sequenced on an Illumina NovaSeq 6000 (S4 flow cell, 100bp paired-end; Illumina, San Diego, CA). Raw data is available in the NCBI SRA under the accession number PRJNA857920 ...
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bioRxiv - Microbiology 2023Quote: ... tuberculosis gDNA was fragmented with a Covaris S220 ultrasonicator and a whole genome library was prepared using the TruSeq Nano library preparation kit (Illumina). Library fragments containing Tn junctions were PCR-amplified from the whole genome library using the Tn-specific primer Mariner_1R_TnSeq_noMm and Illumina p7 primer (Table S4) ...
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bioRxiv - Systems Biology 2023Quote: ... The raw Illumina amplicon sequence data was uploaded to BaseSapce Website (Illumina, San Diego, CA, United States) to assess sequence run quality and completion ...
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bioRxiv - Evolutionary Biology 2023Quote: For samples (yLIC136) sequenced on the HiSeq platform (Illumina), PCR amplification of the transposon genome-junctions ...
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bioRxiv - Cell Biology 2023Quote: ... using a NovaSeq 6000 SP Reagent Kit (Illumina) to generate 108-nucleotide single-end reads ...
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bioRxiv - Cell Biology 2023Quote: ... RNA-seq libraries were subjected to paired-end sequencing (53 nucleotides each) on NovaSeq 6000 (Illumina) using a NovaSeq 6000 SP Reagent Kit (Illumina) ...
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bioRxiv - Immunology 2023Quote: ... 50 million reads/sample was done with the NextSeq 500 High Output Kit v2 (300 cycles) sequencer (Illumina Inc) generating paired end reads of approximately 2 × 150 bp in length ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were prepared using Tru-Seq Stranded mRNA Library Prep kit for NeoPrep (Illumina, San Diego, USA) and 100 ng total RNA ...
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bioRxiv - Microbiology 2023Quote: ... or TruSeq Stranded Total RNA Ribo-Zero Gold (Illumina #RS-122-2303). 2-4 biological replicates were sequenced for all samples ...
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bioRxiv - Microbiology 2023Quote: ... RNA was ribominus selected and directional cDNA libraries were generated using either Stranded Total RNA Prep with Ribo-Zero Plus (Illumina # 20040525) or TruSeq Stranded Total RNA Ribo-Zero Gold (Illumina #RS-122-2303) ...
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bioRxiv - Biochemistry 2023Quote: ... The libraries were made by NEBNext® Ultra™ II DNA Library Prep Kit (Illumina) according to the manufacturer’s instructions and submitted to Novogene for NGS with PE150.
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bioRxiv - Molecular Biology 2023Quote: ... Sequencing was performed on a NextSeq 550 (Illumina) system using a NextSeq 500/550 High Output v2.5 (75 Cycles ...
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bioRxiv - Genomics 2023Quote: The captured samples were sequenced on HiSeq 2000 sequencing platform (Illumina, California, USA) with a PairedEnd sequencing strategy of 2 reads of 100 bases ...
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bioRxiv - Developmental Biology 2023Quote: ... France) for oriented library preparation (Illumina Truseq RNA Sample Preparation Kit) and sequencing (Paired-end 50-35 bp ...
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bioRxiv - Genetics 2023Quote: ... generated from Illumina Omniexpress or Global Screening Array (GSA ...
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bioRxiv - Microbiology 2023Quote: The V1 and V2 regions of the 16S rRNA gene were amplified using universal bacterial primers 27F and 355R74 with CS1 and CS2 adapters (Illumina, San Diego, CA). PCR was conducted with the following reaction composition ...
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bioRxiv - Cell Biology 2023Quote: ... Libraries were prepared for sequencing using a TruSeq Stranded mRNA sample prep kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2023Quote: ... GRCm38 build from iGenome (Illumina). The aligned SAM/BAM files were processed using Featurecounts with Default settings except we used Ensembl GRCm38 GTF file and output for DESeq2 and gene length file.
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bioRxiv - Cancer Biology 2023Quote: ... 1 µg of total RNA with DV200 percentages varying from 78% to 100% underwent ribosomal depletion and library preparation using the TruSeq Stranded Total RNA LT Kit (Illumina catalog RS-122-1202) according to instructions provided by the manufacturer with 8 cycles of PCR ...
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bioRxiv - Neuroscience 2023Quote: ... Single-nucleus cDNA libraries were generated using the Chromium Single Cell 3’ v3 kit (10x Genomics) and sequenced at 600 million reads/library and 2×50 base pairs using the NovaSeq 6000 S2 platform (Illumina). Raw reads were demultiplexed and Cell Ranger (10x Genomics ...
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bioRxiv - Genomics 2023Quote: ... 8 μl of modified DNA was subjected to methylation analysis on the Illumina Infinium MethylationEPIC BeadChip (Illumina, CA, USA) at UCL Genomics according to the manufacturer’s standard protocol.
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bioRxiv - Immunology 2023Quote: ... and were sequenced on a Novaseq 6000 (Illumina). Hashtag oligo libraries were amplified as described previously and were sequenced on a Nextseq 550(54).
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bioRxiv - Developmental Biology 2023Quote: ... The equimolar pool of samples was spiked into a NovaSeq6000 run targeting 20M reads per sample on a S1 FlowCell (Novaseq S1 Reagent Kit, 100 cycles, Illumina, Inc, California, USA). Reads from RNA-seq were first preprocessed by Trimmomatic (v0.40 ...
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bioRxiv - Developmental Biology 2023Quote: ... Pelleted nuclei were resuspended in 50 μl of cold transposition buffer (TD Buffer, 100 nM Tn5 (Illumina, 20034197), 20% PBS ...
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bioRxiv - Developmental Biology 2023Quote: ... and gene expression libraries were sequenced on a HiSeq 4000 (ref 15065681 v03) or a Novaseq (Illumina protocol #1000000106351 v03) with the cbot2 chemistry.
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bioRxiv - Developmental Biology 2023Quote: ... Libraries were sequenced with the Illumina NextSeq 550 using the High-Output 75 cycles kit v2.5 (Cat. #20024906, Illumina), 36 base pair pair-end.
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bioRxiv - Cell Biology 2023Quote: ... Libraries were sequenced on a MiSeq System (Illumina) using a 150 cycle kit v3 (R1 ...
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bioRxiv - Cell Biology 2023Quote: ... The libraries were sequenced at Genomed (Warsaw, Poland) using NovaSeq6000 (Illumina) in PE150 mode ...
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bioRxiv - Cancer Biology 2023Quote: ... Messenger RNA was prepared using TruSeq Stranded mRNA Sample Library Preparation kit (Illumina), according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: ... TruSeq RNA UD Indexes (Illumina, #20022371) were used for the adapter ligation step ...
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bioRxiv - Cancer Biology 2023Quote: ... RNA libraries were prepared using the TruSeq stranded mRNA-seq Library Preparation (Illumina, USA). Sequencing was performed with an Illumina HiSeq 2500 System (150 bp ...
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bioRxiv - Cancer Biology 2023Quote: We first sequenced all scCUTseq libraries on NextSeq 500 (Illumina) in single-end mode using the NextSeq 500/550 High Output Kit (75 Cycles ...
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bioRxiv - Cancer Biology 2023Quote: ... We sequenced all ACT libraries on NextSeq 2000 (Illumina) in single-end mode using the NextSeq 1000/2000 P2 Reagents (100 Cycles ...
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bioRxiv - Cancer Biology 2023Quote: ... which we sequenced on NextSeq 2000 (Illumina) in single-end mode using the NextSeq 2000 P2 Reagents (100 Cycles ...
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bioRxiv - Cancer Biology 2023Quote: ... samples were sequenced for low-pass whole genome sequencing with at least 0.1X coverage in a NovaSeq 6000 (Illumina).
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bioRxiv - Cancer Biology 2023Quote: ... samples were pooled and sequenced on an Illumina NovaSeq 6000 (Illumina) according to standard 10X Genomics’ protocol.
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bioRxiv - Cancer Biology 2023Quote: ... or NovaSeq (Illumina). The sequencing FASTQ files were processed and analyzed in the same manner as the TCGA and GTEx datasets ...
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bioRxiv - Cancer Biology 2023Quote: ... and NovaSeq S1 Reagent Kit v1.5 (cat# 20028319, Illumina).
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bioRxiv - Cancer Biology 2023Quote: ... The library preparation for bulk tumors and cell lines was generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer’s instructions (Illumina ...
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bioRxiv - Genomics 2023Quote: ... or “not provided” based on whether only short-reads (e.g., Illumina) were used ...
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bioRxiv - Cancer Biology 2023Quote: cDNA were used in the library preparation using Ovation® Ultralow Library Systems (NuGEN) and samples were sequenced using an Illumina HiSeq 2000 sequencer (Illumina, San Diego, CA) in high output mode across 9 lanes of 50bppaired-end sequencing ...
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bioRxiv - Immunology 2023Quote: ... and loaded onto a 600-cycle V3 MiSEQ cartridge (Illumina) for sequencing in the UAB Heflin Sequencing Core.49
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bioRxiv - Evolutionary Biology 2023Quote: ... The multiplexed cDNA libraries were subjected to sequencing with 151 bp paired-end read length on a HiSeq 2500 sequencer (Illumina). The average sequencing depth was 24,861,133 paired reads per sample ...