Labshake search
Citations for Illumina :
751 - 800 of 829 citations for Cytomegalovirus Cell Lysate Antigen since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Physiology 2022Quote: ... Quantified libraries were pooled and sequenced on an Illumina NextSeq using a high capacity 75 read flow cell (Illumina, San Diego, CA) following the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2024Quote: The Total RNA Library was prepared using the Illumina NovaSeq (S4) 300 cycle flow cell and reagent kit (Illumina, San Diego, CA). The high-throughput sequencing strategy included 300 cycles and a read length of paired-end 150 base pairs ...
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bioRxiv - Genomics 2023Quote: HMW DNA from 1.5 x 106 cells was used to generate Illumina libraries with the Nextera XT DNA Library Preparation kit (Illumina FC-131-1024) and Illumina DNA PCR-Free Library Prep ...
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bioRxiv - Cancer Biology 2024Quote: ... Prepared libraries were subjected to high throughput sequencing using Illumina NovaSeq 6000 system using S4 flow cell (Illumina, San Diego, CA, USA) and v1.5 chemistry ...
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bioRxiv - Bioengineering 2024Quote: ... The resulting cell nuclei were subjected to incubation for 30 min with Tagment DNA TDE1 Enzyme and Buffer (Illumina, #FC-121-1030). This step fragmented the chromatin and inserted sequencing adapters ...
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bioRxiv - Genomics 2023Quote: ... Two biological replicates of 7.5 × 104 cells for each condition were then isolated for direct processing with Nextera Tn5 enzyme (Illumina, FC-131-1096). Samples were treated as previously described (77 ...
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bioRxiv - Bioengineering 2023Quote: ... Libraries were pooled and paired-end sequenced at 100bp per end with an additional 10bp of index reads on a NovaSeq S4 flow cell (Illumina, Novaseq 6000).
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bioRxiv - Genomics 2022Quote: ... we generated a combination of noisy ONT sequencing (MinION R.9.4.1 flow cells with the LSK-109 ligation library prep kit) and Illumina sequencing (PE 150 bp, ∼49x coverage; Illumina NovaSeq 6000). Based on published ONT benchmarking (https://nanoporetech.com/accuracy) ...
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bioRxiv - Microbiology 2023Quote: ... These products were pooled into equal molar proportions and sequenced on Illumina MiSeq V2 standard flow cell (Illumina, San Diego, CA, USA) for 2*300 bp pair-end chemistry according to the manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: Libraries were sequenced at between 40,000 and 50,000 fragment reads per cell following Illumina’s standard protocol using the Illumina cBot and HiSeq 3000/4000 PE Cluster Kit (Illumina, San Diego, CA). The flow cells were sequenced as 100 × 2 paired end reads on an Illumina HiSeq 4000 HD using HiSeq 3000 / 4000 sequencing kit and HCS v3.4.0.38 collection software ...
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bioRxiv - Microbiology 2024Quote: ... 100 bp paired end sequencing was performed on Illumina NovaSeq 6000 platform using S4 flow cell (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Immunology 2024Quote: ... so the remaining fifteen sublibraries were ultimately sequenced on a NovaSeq S4 instrument at approximately 30,000 reads per cell (Illumina; Chan Zuckerberg Biohub).
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bioRxiv - Developmental Biology 2024Quote: ... Single cell libraries were prepared by the University of Michigan Advanced Genomics Core and sequencing was performed using the 10X Genomics Chromium platform using manufacturer’s protocol for 10x Single Cell Expression 3’ and sequenced on the NovaSeq (S4) 300 cycle (Illumina, San Diego, CA). Sequencing outputs were demultiplexed using 10x Genomics Cell Ranger 7.1.0 software and FASTQ files were aligned to the Genome Reference Consortium Mouse Build 38 ...
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bioRxiv - Cell Biology 2020Quote: ... were prepared from HepG2 cell samples using 200–500 ng of total RNA following the manufacturer’s instructions for the TruSeq RNA kit (Illumina, San Diego, CA, USA). With this kit ...
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bioRxiv - Physiology 2019Quote: ... DNA was amplified using fusion primers designed against the surrounding conserved regions that are tailed with sequences to incorporate flow cell adapters and indexing barcodes (Illumina, San Diego, CA). Each sample was PCR amplified with two differently barcoded V4-V5 fusion primers and were advanced for pooling and sequencing ...
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bioRxiv - Immunology 2021Quote: ... Cells were washed once with PBS before DNA transposition was performed with the Nextera DNA Library Prep Kit (Illumina, Cat. #FC-121-1031). Per sample ...
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bioRxiv - Neuroscience 2020Quote: ... 50bp RNA-seq of IP fractions and total homogenate from 5 replicates per cell type (20 samples total) was performed on a single lane of a HiSeq 3000 (Illumina, San Diego, California), yielding ∼350M reads ...
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bioRxiv - Microbiology 2020Quote: ... The library was then sequenced by Illumina Miseq at Michigan State University (Michigan, USA) using a standard flow cell and 500 cycle v2 reagent cartridge (Illumina Inc., Hayward, California, USA).
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bioRxiv - Systems Biology 2021Quote: Single nuclear 3’ RNA-sequencing was performed at the Indiana University Center for Medical Genomics Core using the Chromium single cell system version 3 (10x Genomics, San Francisco, CA) and the NovaSeq6000 sequencer (Illumina, San Diego, CA). Cell Ranger 4.0 was utilized to generate sample-specific FASTQ files and reads were aligned to the mm10 reference genome using STAR ...
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bioRxiv - Cancer Biology 2020Quote: ... All the cell line mRNA libraries for sequencing were prepared according to the TruSeq Stranded Total RNA Library Prep Kit (Illumina, #RS-122-2201). Sequencing (75 bp ...
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bioRxiv - Developmental Biology 2022Quote: ... Cells were used for the preparation of single-cell libraries using the 10X Genomics Chromium system (10X Genomics, Pleasanton, CA) and sequenced with an Illumina NovaSeq 6000 (Illumina, San Diego, CA) by the KUMC Genome Sequencing Facility (Kansas City ...
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bioRxiv - Developmental Biology 2021Quote: ... Next generation sequencing of equimolar pools of cDNA libraries was performed by loading a paired-end 75bp rapid flow cell to generate a minimum of 25M raw reads on a HiSeq 2500 sequencing platform (Illumina, San Diego, CA). Raw sequencing data (submitted to Gene Expression Omnibus ...
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bioRxiv - Molecular Biology 2022Quote: ... RIP-seq libraries were pooled and sequenced on a MiSeq 50 base pair single-read flow cell using v2 reagents (Illumina, San Diego, CA). SIR libraries were also pooled and sequenced on either a HiSeq2500 high output 100 base pair paired-end flow cell using TruSeq SBS v3 reagents or on a NextSeq500 high output 75 base pair single-read flow cell using v2 reagents (Illumina ...
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bioRxiv - Molecular Biology 2022Quote: ... SIR libraries were also pooled and sequenced on either a HiSeq2500 high output 100 base pair paired-end flow cell using TruSeq SBS v3 reagents or on a NextSeq500 high output 75 base pair single-read flow cell using v2 reagents (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2020Quote: ... Libraries from 1000-4000 cells (depending on the sample) were sequenced in paired end mode on a HiSeq 4000 instrument (Illumina, San Diego, CA) at an average depth of 174,446 reads per cell (for V2/V3) ...
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bioRxiv - Cancer Biology 2021Quote: ... scRNA-libraries were sequenced on a NextSeq 500/550 High Output Flow Cell v2.5 (150 Cycles) on an Illumina NextSeq 550 (Illumina, San Diego, CA, USA). The bcl2fastq function and the cell ranger (v3.0 ...
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bioRxiv - Immunology 2020Quote: ... University of Edinburgh using the NextSeq 500/550 High-Output v2 (150 cycle) Kit (# FC-404-2002) with a High Out v2.5 Flow Cell on the NextSeq 550 platform (Illumina Inc, #SY-415-1002). 8 libraries were combined in an equimolar pool based on the library quantification results and run across one High-Output Flow Cell ...
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bioRxiv - Genomics 2021Quote: ... The PCR products (4 nM from every single cell) were treated with the Miseq Reagent Kit v2 50 Cycles (Illumina KK, Tokyo, Japan) and sequenced by the MiSeq sequencer (26 bp ...
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bioRxiv - Neuroscience 2021Quote: ... The 3’ gene expression libraries and HTO sequencing libraries were pooled and sequenced at an approximate depth of 50,000 reads per cell for the 3’ gene expression libraries and 5,000 reads for HTO libraries using the NovaSeq S1 (Illumina, San Diego, CA, USA) flow cells.
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bioRxiv - Immunology 2021Quote: ... The libraries were loaded onto a flow cell and subjected to paired-end sequencing on a HiSeq 2000 system (Illumina, San Diego, CA).
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were pooled for even coverage per cell and were sequenced at the CHLA Center for Personalized Medicine Molecular Genomics Core on the NextSeq 550 (Illumina, San Diego, CA) with 26bp sequencing for Read1 ...
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bioRxiv - Developmental Biology 2024Quote: ... library construction was immediately carried out using a Chromium Single Cell 3’ Reagent Kit (Version 3) and sequenced on an Illumina HiSeq 4000 or an Illumina NextSeq2000 (Illumina, cat no. 20040559) by the Technion Medicine Faculty Azrieli-Technion Genomics Center ...
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bioRxiv - Genomics 2022Quote: ... 50,000 cells were resuspended in TD buffer for a 1hr incubation at 37C with TDE1 (Nexetra DNA Library Prep Kit; Illumina, San Diego, CA). Remaining steps of library prep were performed as published by Buenrostro et al ...
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bioRxiv - Molecular Biology 2023Quote: ... and the pooled library (from 27 RNA samples) was loaded to an SP flow cell and sequenced on the NovaSeq 6000 platform (Illumina; San Diego, CA) with 2 x 150 bp paired-end sequencing ...
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bioRxiv - Immunology 2023Quote: ... scRNA-seq was completed at Stanford Functional Genomics Facility (SFGF) using the Chromium Single Cell Gene Expression kit (10X Genomics, CA, USA) and Illumina Novaseq (Illumina Inc, CA, USA) sequencer according to manufacturer’s protocols.
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bioRxiv - Evolutionary Biology 2024Quote: Next Generation Sequencing was performed at either Psomagen (Rockville, MD) or at the Translation Genomics Research Institute (Phoenix, AZ) on patterned flow cells (either an Illumina HiSeqX or NovaSeq) using 2 x 150 base pair paired end reads ...
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bioRxiv - Microbiology 2024Quote: ... Metagenome sequencing was performed in two lanes of a NovaSeq S4 flow cell in 2×150bp paired-end format on a NovaSeq 6000 (Illumina, San Diego, USA). Raw sequencing data is available on the NCBI SRA (BioProject PRJNA974462).
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bioRxiv - Cell Biology 2020Quote: ... RNAseq of cultured cells was conducted by the Weill Cornell Medical College Genomics Core using a NovaSeq 6000 system (Illumina, San Diego, CA, USA) with 50bp paired end reads ...
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bioRxiv - Genomics 2019Quote: ... which does not depend on the accuracy of library dilution in the case of unordered cells (similar to, for example, Illumina MiSeq or HiSeq 2500). The nanoballs are loaded using a DNB Loader ...
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bioRxiv - Genomics 2020Quote: Total RNA was extracted from Epstein–Barr-virus-transformed lymphoblastoid cell lines (LCLs) by following the Illumina TruSeq v2 RNA Sample Preparation protocol (Illumina, Inc., San Diego, CA) by the Department of Genetic Medicine and Development at the University of Geneva ...
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bioRxiv - Microbiology 2021Quote: ... Libraries were then sequenced on a NovaSeq 6000 instrument with a SP flow cell (2 x 250 bp) (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Cancer Biology 2020Quote: ... and poly-A sequencing libraries (HE2.1 and TIVE cells) were generated using the TruSeq RNA Sample Prep Kit (Illumina, catalog no. FC-122-1001).
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bioRxiv - Microbiology 2021Quote: ... Sequencing was carried out using the Illumina technology using a standard flow cell and 500 cycle v2 reagent cartridge (Illumina Inc., Hayward, California, USA).
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bioRxiv - Biochemistry 2021Quote: ... Amplicons containing the mutagenized regions were prepared from each cellular isolate and sequenced using paired end reads on a 600 cycle Illumina MiSeq cell (Illumina Inc., San Diego, CA) to a final depth of ~2 million reads per amplicon/ isolate ...
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bioRxiv - Cancer Biology 2021Quote: ... Libraries from 864 cells with unique barcodes were combined and sequenced with a NextSeq 500 sequencer (#SY-415-1001, Illumina, San Diego, California, USA).
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bioRxiv - Cancer Biology 2022Quote: ... 50.000 MDA-MB-231 cells infected with shControl (C) or shLOXL2 (KD) were collected and treated with transposase Tn5 (Nextera Tn5 Transposase, Illumina Cat #FC-121-1030). DNA was purified using AMPure XP beads to remove big fragments (0.5x beads ...
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bioRxiv - Cell Biology 2019Quote: ... Libraries were barcoded and sequenced on a NextSeq Series Sequencing System (HUJI Center for Genomic Technologies) using Illumina flow cell (Illumina 500 NextSeq High Output v2 Kit, FC-404-2005; Illumina, San Diego, CA, USA). The sequencing data were uploaded to the usegalaxy.org (Afgan et al. ...
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bioRxiv - Microbiology 2019Quote: ... multiplexed on the lanes of HiSeq Rapid PE v2 Flow cells for generating paired reads of 100 bases on an Illumina HiSeq 2500 sequencer (Illumina, San Diego, CA, USA).
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bioRxiv - Neuroscience 2021Quote: ... Libraries were pooled and loaded for clustering on 1 lane of a Single-read Illumina Flow cell (for an average of 50 million of reads per library) (Illumina, San Diego, CA, USA). Reads of 100 bases were generated using the TruSeq SBS chemistry on an Illumina HiSeq 4000 sequencer (Illumina ...
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bioRxiv - Immunology 2021Quote: ... The V(D)J enriched library was then constructed via Chromium Single Cell 5’ Library Construction Kit (10x Genomics Cat#1000020) and libraries were sequenced in a NovaSeq™ 6000 Sequencing System (Illumina, San Diego, CA). V(D)J sequences were collapsed using Cell Ranger ...