Labshake search
Citations for Illumina :
51 - 100 of 240 citations for V Bottom Microplate 96 well since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2023Quote: ... as well as Hi-C (Illumina) chromatin interaction data ...
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bioRxiv - Genomics 2021Quote: ... Barcodes were added using the Illumina UD 96 index kit (Illumina). Final libraries were PCR-amplified during 5 cycles with Kapa HIFI PCR kit (Roche ...
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bioRxiv - Plant Biology 2019Quote: ... Pools of 96 libraries were sequenced using the HiSeq 2500 (Illumina). The subset of samples selected for high-coverage methylome analysis were run as a pool of 96 samples across a flow cell (8 lanes ...
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bioRxiv - Neuroscience 2022Quote: ... and sequencing was performed on NextSeq500 (single-end 96 bp; Illumina). Differential expression analysis on voom normalized51 gene expression values were performed using limma eBayes52,53 ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and Illumina UD 96 index kit (Illumina, San Diego, CA, USA) to add barcodes ...
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bioRxiv - Evolutionary Biology 2019Quote: We used a RAxML tree (CIPRES V. 3.1) generated from Illumina paired-end whole-genome sequencing data (70,437 SNPs ...
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Molecular profiling of driver events and tumor-infiltrating lymphocytes in metastatic uveal melanomabioRxiv - Cancer Biology 2019Quote: ... V(D)J libraries were sequenced on a MiSeq instrument (Illumina) whereas the gene expression libraries were run on a NextSeq (Illumina) ...
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bioRxiv - Microbiology 2020Quote: ... Base-calling was carried out with “bcl2fastq” software (v.2.17.1.14, Illumina). Paired-end reads were further analyzed in CLC Genomics Workbench Tool 9.5.1 ...
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bioRxiv - Evolutionary Biology 2019Quote: ... intermedius using a TruSeq RNA sample preparation kit v.2 (Illumina) and run on an Illumina HiSeq1500 with 100 bp single-end reads ...
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bioRxiv - Microbiology 2019Quote: ... Base-calling was carried out with “bcl2fastq” software (v.2.17.1.14, Illumina). Paired-end reads were further analyzed in CLC Genomics Workbench Tool 9.5.1 ...
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bioRxiv - Microbiology 2021Quote: ... Data was demultiplexed using bcl2fastq2 v.20 (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2022Quote: ... Using the TruSeq RNA Sample Library Preparation v.2 kit (Illumina), RNA was fragmented into small pieces using divalent cations under elevated temperature ...
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bioRxiv - Microbiology 2023Quote: ... and we typically pooled 96 sequencing libraries on a Next-seq (Illumina) for sequencing.
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bioRxiv - Genomics 2023Quote: ... as well as short read sequencing (Illumina) for ancestral and evolved strains ...
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bioRxiv - Cell Biology 2020Quote: ... and hybridized on Illumina whole-genome HumanHT-12 v 4.0 chip (Illumina). Acquisition and data analysis were performed as previously described14 ...
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bioRxiv - Microbiology 2022Quote: ... Sequencing libraries were prepared with MiSeq reagent kit v.2 (Illumina, USA), targeting mainly dsDNA viruses ...
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bioRxiv - Evolutionary Biology 2020Quote: ... using 300-cycle kit (v.3, Illumina, Inc., San Diego, CA, USA) to obtain 150 bp paired-end reads.
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bioRxiv - Microbiology 2020Quote: ... NGS sequencing was accomplished using MiSeq v.3 2×75 chemistry (Illumina). Raw sequencing files were demultiplexed using IlluminaBasecallsToFasq procedure from PICARD package and mapped to NC_055512.2 SARS-CoV-2 reference sequence with BwaAndMarkDuplicatesPipelineSpark procedure from GATK v.4.1.5.0 package (Broad Institute ...
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bioRxiv - Evolutionary Biology 2021Quote: Sequencing data were demultiplexed using the Bcl2Fastq Conversion Software (v. 2.20, Illumina). Raw sequences were adapter- and quality-trimmed with Trimmomatic (v ...
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bioRxiv - Genomics 2019Quote: ... we demultiplexed reads using Illumina software (bcl2fastq v 1.8 – 2.17; Illumina 2013). We then imported reads to Geneious 6.1.7 – R9.0.4 and trimmed adapters and low-quality bases (
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bioRxiv - Microbiology 2020Quote: ... Reads were trimmed (Trimmomatic v0.33) (63) after demultiplexing (bcl2fastq v.2.15.0, Illumina) to remove adaptor sequences ...
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bioRxiv - Genetics 2021Quote: ... 371 cows were genotyped with BovineSNP50 v.2.0 array (Illumina Ca. USA). In the first quality control step ...
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bioRxiv - Molecular Biology 2020Quote: ... After initial data processing by the MiSeq Control Software v 2.6 (Illumina), base calls were extracted and further analyzed by a set of homemade scripts detailed in Supplementary Methods ...
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bioRxiv - Neuroscience 2023Quote: ... Sequencing data were demultiplexed using the bcl2fastq2 Conversion Software (v. 2.20, Illumina), and primary data analysis was performed with the Cell Ranger Gene Expression pipeline (version 3.1.0 ...
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bioRxiv - Immunology 2024Quote: ... Sequencing data were demultiplexed using the bcl2fastq2 Conversion Software (v. 2.20, Illumina) and primary data analysis performed with the Cell Ranger Gene Expression pipeline (version 7.1.0 ...
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bioRxiv - Genomics 2023Quote: ... the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) was used for library preparation following the low-throughput protocol ...
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bioRxiv - Cancer Biology 2024Quote: ... The chromosome copy number analysis was performed in GenomeStudio v.2.0 (Illumina) by using the cnvPartition v.3.2.1 plugin ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Each individual received a unique barcode before multiplexing 96 individuals per lane (Illumina HiSeq 2000 ...
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Tryptophan Metabolites And Their Predicted Microbial Sources In Fecal Samples Of Healthy IndividualsbioRxiv - Microbiology 2024Quote: ... A set of 96 Unique dual index barcodes (Illumina TruSeq UD Indexes, # 20022370) were utilized to barcode samples ...
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bioRxiv - Immunology 2021Quote: ... 150 µl from the 14 pM pool was loaded into each well of an 8-well strip tube and loaded onto a cBot (Illumina) for cluster generation ...
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bioRxiv - Cancer Biology 2021Quote: ... and 100 μl from the 16 pM pool were loaded into each well of an 8-well strip tube and placed onto a cBot (Illumina) for cluster generation ...
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bioRxiv - Immunology 2023Quote: ... 150µL from the 14pM pool was loaded into each well of an 8-well strip tube and loaded onto a cBot (Illumina) for cluster generation ...
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bioRxiv - Genomics 2020Quote: ... De-multiplexing of RNA-Seq reads was conducted using bcl2fastq v.2 (Illumina). Both DNA-Seq and RNA-Seq reads were submitted to FastQC 51 for quality validation.
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bioRxiv - Genetics 2021Quote: ... SNPs were called using GenomeStudio software V.2011.1 (Illumina, Inc. San Diego, CA) and the physical positions of the SNPs were determined by using the IT97K-499-35 reference genome v1.0 (Lonardi et al. ...
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bioRxiv - Cell Biology 2021Quote: ... LT-PTC and pUC using TruSeq mRNA sample prep kit v.2 (Illumina). Sequence alignment and RNA-Seq analysis ...
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bioRxiv - Genomics 2021Quote: ... The data were demultiplexed and converted to fastq using bcl2fastq2 v.2.20 (Illumina). Illumina data underwent QC with MultiQC v.1.5 (Ewels et al ...
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bioRxiv - Immunology 2020Quote: ... Single-cell TCR V(D)J libraries were sequenced with HiSeq2500 machine (Illumina). All sequencing was done according to the manufacturer’s specification (10X Genomics).
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bioRxiv - Immunology 2022Quote: ... Sequencing data were analyzed with the Assign TruSight HLA v.2.1 software (Illumina).
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bioRxiv - Immunology 2023Quote: ... cDNA libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina) ...
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bioRxiv - Immunology 2023Quote: ... cDNA Libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... and V(D)J-enriched libraries were sequenced on a NextSeq 550 (Illumina).
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bioRxiv - Genomics 2023Quote: ... BCL files were converted to FastQ files using bcl2fastq (v.2.19) from Illumina. Read 1 and Read 2 FastQ files were processed using a Snakemake pipeline.71 In brief ...
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bioRxiv - Genetics 2023Quote: After demultiplexing the barcoded sequences using the CASAVA pipeline v.1.8 (Illumina, Inc.), the GBS data were processed using GBS2popgen.sh (available on GitHub at ...
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bioRxiv - Genomics 2023Quote: ... and preliminary QC were conducted using the Dragen pipeline (v.1.3.0, Illumina Inc). Reads were submitted to the NCBI Short Read Archive (SRA ...
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bioRxiv - Genomics 2023Quote: ... and combined with PhiX control (v.3, Illumina Inc, San Diego, CA, USA) at a final concentration of 1% ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Genotypes were called using Illumina’s Genome Studio Genotyping Module v 2.0.5 (Illumina, 2016). Filtering criteria included a SNP call frequency > 0.85 ...
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bioRxiv - Microbiology 2024Quote: ... MinION reads were assembled using IRMA v 0.6.7 (16) and validated by Illumina sequencing as previously described (17) ...
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bioRxiv - Neuroscience 2019Quote: Illumina TruSeq Stranded mRNA sample preparation kit with 96 dual indexes (Illumina, CA, USA) was used to prepare RNA libraries for sequencing ...
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bioRxiv - Cell Biology 2023Quote: ... and Nextera® XT Index Kit (96 indexes, 384 samples) (Illumina, FC-131-1002) according to the manufacturer protocol (with 2.5 x volume reduction in all reactions) ...
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bioRxiv - Genomics 2020Quote: ... SAMtools v.1.9 [59] was used to filter out secondary and duplicate (Illumina only) alignments and calculate sequencing depth for each position ...