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Citations for Illumina :
451 - 500 of 686 citations for Family With Sequence Similarity 46 Member B FAM46B Antibody since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Molecular Biology 2020Quote: ... Reads were confirmed to be post-quality control by Prinseq and mapped to the human donor sequence (hCoV-19/Germany/BavPat1/2020|EPI_ISL_406862|2020-01-28) using BWA (Illumina) and Pomoxis mini_align (Minion) ...
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bioRxiv - Molecular Biology 2021Quote: ... All non-target sequences were screened by matching to the PhiX genome used by Illumina (Genbank Accession NC001422) with BLAST+.
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bioRxiv - Microbiology 2019Quote: ... libraries were constructed using adaptor sequences and reaction conditions from the TruSeq DNA LT Sample Prep Kit (Illumina), before sequencing with Illumina MiSeq (2×300 bp) ...
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bioRxiv - Microbiology 2021Quote: ... Libraries were sequenced as 50 bp-reads on a HiSeq 2500 using the sequence by synthesis technique (Illumina). HiSeq control software and real-time analysis component were used for image analysis ...
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bioRxiv - Microbiology 2021Quote: Raw data from the Illumina MiSeq was first converted into FASTQ format 2 × 312 paired-end sequence files using the bcl2fastq program (v1.8.4) provided by Illumina. Format conversion was performed without de-multiplexing ...
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bioRxiv - Microbiology 2019Quote: ... Sequence data in the database were generated on either an Illumina MiSeq sequencer (Illumina, San Diego, CA, USA) or a HiSeq 2500 sequencer (Illumina ...
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bioRxiv - Microbiology 2020Quote: ... Paired-end sequences of 2 x 150 bp were generated for all libraries on the NovaSeq platform (Illumina). Metagenomic sequence reads are publicly available on the JGI IMG portal.
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bioRxiv - Microbiology 2019Quote: Reads in the FASTQ format were cleaned up with trimmomatic/0.36[65] to remove sequences originating from Illumina adaptors and low quality reads ...
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bioRxiv - Cell Biology 2020Quote: ... Raw data were cleaned up with trimmomatic/0.36 (Bolger et al., 2014) to remove sequences originating from Illumina adaptors and low quality reads ...
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bioRxiv - Molecular Biology 2020Quote: ... Single-end 84 nt sequence reads were generated using the NextSeq 500 system (Illumina, San Diego, CA, USA) at 192 single-cell DNA libraries per flow cell ...
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bioRxiv - Cell Biology 2021Quote: ... Basecalling and de-multiplexing of indexed reads was performed by CASAVA version 1.8.2 (Illumina. Sequences were trimmed to remove Illumina adapter sequences using Cutadapt version 1.2.1 ...
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bioRxiv - Molecular Biology 2022Quote: ... generated by Illumina HiSeq 2000 platform were converted into nucleotide sequence with quality score FASTQ (FASTA with quality score) using CASAVA software v1.8.2 (Illumina) followed by adaptor trimming ...
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bioRxiv - Genetics 2021Quote: ... Sequences were demultiplexed using QIIME2 (core distribution 2018.6)42 for dataset 1 and BCL2FASTQ (Illumina, San Deigo, CA) for dataset 2 ...
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bioRxiv - Genomics 2020Quote: FASTQ files from individuals with genotype information (from whole genome sequencing, whole exome sequence, or Illumina SNP Arrays) were downloaded from the GTEx database (v6p release) ...
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bioRxiv - Microbiology 2020Quote: ... the V4 region of the 16S rRNA gene was amplified following the EMP protocol (http://www.earthmicrobiome.org/protocols-and-standards/16s/) and sequences were obtained by Illumina MiSeq at the Argonne Sequencing Center (Lemont ...
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bioRxiv - Immunology 2020Quote: ... Raw data from the Illumina MiSeq was first converted into FASTQ format 2□×□312 paired-end sequence files using the bcl2fastq program (v1.8.4) provided by Illumina. Format conversion was performed without de-multiplexing ...
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bioRxiv - Microbiology 2020Quote: ... Libraries were sequenced as 50 bp-reads on a HiSeq 2500 using the sequence by synthesis technique (Illumina). HiSeq control software and real-time analysis component were used for image analysis ...
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bioRxiv - Developmental Biology 2021Quote: ... On average 10.6 millions of 38-nucleotide paired-end sequences were obtained using a NextSeq 500 sequencer (Illumina).
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bioRxiv - Genetics 2020Quote: All sequence data was de-multiplexed using input sample barcodes during file export from the sequencer (Illumina, Inc.), resulting in a pair of fastq files for each individual sample ...
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bioRxiv - Cell Biology 2022Quote: We identified genes with significantly differential transcript levels following the RSEM-EBSeq workflow outlined at http://deweylab.github.io/RSEM and used the sequences and annotation of UCSC human genome v19 (hg19) from Illumina igenome ...
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bioRxiv - Microbiology 2022Quote: ... De-novo assembly of the generated reads was done using Velvet Assembler V1.0.0 incorporated in Illumina BaseSpace Sequence Hub (Illumina). The assembled contigs were annotated using Rapid Annotation using Subsystem Technology (RAST ...
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bioRxiv - Neuroscience 2022Quote: ... Pair-end reads of cDNA sequences were aligned back to the human genome (UCSC hg19 from Illumina iGenome) by the spliced read mapper TopHat (v2.0.4 ...
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bioRxiv - Neuroscience 2023Quote: ... Adaptor ligated cDNA was PCR enriched to incorporate an Illumina compatible index sequence (NEBNext Multiplex Oligos for Illumina, Dual Index Primers Set1 ...
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bioRxiv - Evolutionary Biology 2023Quote: ... We trimmed sequence reads for Illumina adapter artifacts using the Illumina BaseSpace software (Illumina, San Diego, California, USA).
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bioRxiv - Systems Biology 2023Quote: ... Hundred bp paired-end sequence reads of the captured exons were generated using HiSeq 2000 Sequencing System (Illumina) according to the manufacturer’s instructions.
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bioRxiv - Plant Biology 2023Quote: Sequence libraries were prepared using a TruSeq Stranded mRNA Sample Prep Kit (Illumina, San Diego, CA, United States) and sequenced using Ilumina Hiseq 2500 with a single-end sequencing protocol ...
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bioRxiv - Microbiology 2023Quote: Consensus insert sequences from Nanopore sequencing were matched with the respective selection experiment using the data from Illumina sequencing ...
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bioRxiv - Genomics 2023Quote: The list of the 100 publicly available ovine whole genome sequences (WGS, short read Illumina HiSeq/Nova Seq) coming from 14 different breeds generated in various INRAE and Teagasc research projects is detailed in Table S1 (project and sample accession numbers) ...
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bioRxiv - Genomics 2023Quote: Quality-based read trimming was performed to remove poor-quality reads and contaminating adapter sequences using trimmomatic v.0.39 (Bolger et al., 2014) (parameters: ILLUMINACLIP:Illumina-adapters.fa:2:30:10 SLIDINGWINDOW:10:20 MINLEN:50) ...
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bioRxiv - Molecular Biology 2023Quote: ... The reverse oligonucleotides also contain barcode sequences for multiplexing according to the TruSeq v1/v2/LT protocol (Illumina). Sequencing libraries were obtained from 12–16 cycles of PCR using 0.02 μM long NGS adapter oligonucleotides (forward and reverse ...
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bioRxiv - Plant Biology 2023Quote: The generation of FASTQ files from the RNA-Seq sequences was performed by CASAVA software v1.8.2 (Illumina Inc.). Sequence reads were filtered and trimmed for low quality at a score of 20 using Sickle v1.33 41 ...
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bioRxiv - Cancer Biology 2024Quote: ... and PCR-amplified using customize primers (Supplementary Material) designed following Illumina Adapter Sequences manual (Illumina, Document #1000000002694 v16) instructions ...
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bioRxiv - Microbiology 2024Quote: ... The fluorescent images were processed into sequences and transformed to FastQ format using the Genome Analyzer Pipeline Analysis software 1.8.2 (Illumina). The sequence output was controlled for general quality features ...
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bioRxiv - Genetics 2023Quote: We analyzed the whole genome sequences of 1,869 cattle from more than 70 different breeds generated by Illumina technology (Supplementary Table 14) ...
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bioRxiv - Genetics 2024Quote: ... Primers were designed to amplify barcoded donor sequences on the plasmid pools to quantify strain abundance by Illumina sequencing with 2 × 150 bp reads (Novogene).
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bioRxiv - Microbiology 2024Quote: Raw sequence reads were demultiplexed and converted to FASTQ format at the GGBC facility using Cassava v1.8 (Illumina). Following demultiplexing ...
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bioRxiv - Genomics 2020Quote: ... The B allele frequency (BAF) and the log R ratio (LRR) were extracted from GenomeStudio (Illumina, USA) for representation.
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bioRxiv - Neuroscience 2020Quote: ... The B allele frequency (BAF) and the log R ratio (LRR) were extracted from GenomeStudio (Illumina, USA) for representation.
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bioRxiv - Evolutionary Biology 2023Quote: ... cDNA libraries were prepared according to the 16S Metagenomic Sequencing Library Preparation protocol (15044223 Rev. B, Illumina). Libraries were indexed using Nextera XT Index Kit (FC-131-1002/Illumina) ...
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bioRxiv - Immunology 2021Quote: ... Sequence-ready libraries were prepared using the Illumina TruSeq Total Transcriptome kit with Ribo-Zero Gold rRNA depletion (Illumina). Quality assessment and quantification of RNA preparations and libraries were carried out using an Agilent 4200 TapeStation and Qubit 3 ...
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bioRxiv - Genomics 2020Quote: Short-read sequence libraries for JI4 and JI128 were prepared using the TruSeq DNA PCR-Free Library Kit (Illumina), according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2019Quote: ... 100-nt paired-end sequencing to a raw sequence depth of 150X per sample on a HiSeq 2500 (Illumina) was subsequently performed ...
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bioRxiv - Genetics 2020Quote: ... Globin and rRNA sequences were depleted from up to 5 µg of treated RNA using Globin-Zero Gold (Illumina), before PolyA selection with NEBNext Poly(A ...
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bioRxiv - Cell Biology 2021Quote: ... Libraries were sequence on NovaSeq to obtain minimum of 70,000 reads per cell to achieve ∼75% barcode saturation (Illumina). Filtering of samples were done by eliminating cells with mitochondrial contamination (<10%) ...
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bioRxiv - Plant Biology 2021Quote: ... and used for sequence library preparation with a TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA). The resultant libraries were sequenced on NextSeq500 (Illumina ...
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bioRxiv - Bioengineering 2022Quote: ... and 1 ×107 cells from each gate were barcoded and the sequences for each cell were determined by Illumina next-generation sequencing15 ...
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bioRxiv - Bioengineering 2021Quote: ... The resulting raw sequence data files (.bcl) were converted to the FASTQ format and de-multiplexed with bcl2fastq 2.17 software (Illumina). One mismatch was permitted for index sequence identification ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The final sequences were confirmed by mapping ∼500k shorter reads (2×300 bp, obtained from an Illumina MiSeq run) to the sequences obtained from PacBio ...
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bioRxiv - Genetics 2022Quote: ... sequence reads were mapped to the mouse reference genome GRCm38/mm10 (iGenomes, Illumina; chromosomes 1-19, X, Y, M) using the Rsubread v1.28.1 package in R v3.4.4 ...
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bioRxiv - Zoology 2021Quote: ... Sequences were determined by using a MiSeq system with a MiSeq reagent kit v3 (Illumina, San Diego, CA, USA), which generated 2 × 300-bp paired□end reads.