Labshake search
Citations for Illumina :
2551 - 2600 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genetics 2024Quote: ... according to the manufacture’s instruction and analyzed by Illumina HiSeq 2500 system (Illumina). For Figure S5 ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The ancestral genome was sequenced via long (Oxford Nanopore Minion) and short (Illumina iSeq100) read technologies ...
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bioRxiv - Developmental Biology 2024Quote: ... multiplexed and sequenced on a NovaSeq 6000 (Illumina) in 2× 53-bp paired-end format.
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bioRxiv - Developmental Biology 2024Quote: ... Libraries were prepared using the TruSeq Stranded mRNA library prep kit (Illumina), using TruSeq RNA unique dual index adapters (Illumina) ...
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bioRxiv - Neuroscience 2024Quote: ... Final cDNA libraries were checked for quality by TapeStation and qPCR (Kapa’s library quantification kit for Illumina Sequencing platforms ...
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bioRxiv - Neuroscience 2024Quote: ... Samples were clustered and sequenced using NovaSeq S2 reagents (NovaSeq S2 Run, Illumina) with 80 samples/flow cell and 50 base paired end reads (targeted sequencing depth=45 million reads/sample).
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bioRxiv - Cancer Biology 2024Quote: ... microdissected tumor and germline DNA were subjected to WGS on HiSeq2000 (Illumina). The median sequencing coverage depth of 102x (range ...
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bioRxiv - Genomics 2024Quote: ... We added a FORMAT (GT) and SAMPLE (0/1) column to the VCF and used hap.py (https://github.com/Illumina/hap.py) to compare the v4.2.1 benchmark VCF and BED (https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/ChineseTrio/HG005_NA24631_son/NISTv4.2.1/GRCh38/) ...
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bioRxiv - Cancer Biology 2024Quote: ... libraries were prepared using TruSeq Stranded mRNA Library Prep Kit (Illumina), and equimolar libraries were multiplexed and sequenced on an Illumina NextSeq 500 (pair end 100 bp reads ...
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bioRxiv - Cancer Biology 2024Quote: ... followed by amplification through PCR with Nextera DNA CD Indexes (Illumina) and NEBNext Ultra II Q5 Master mix (NEB) ...
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bioRxiv - Cell Biology 2024Quote: ... Raw sequence data (.bcl files) generated from Illumina NovaSeq was converted into fastq files and de-multiplexed using Illumina bcl2fastq program version 2.20 ...
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bioRxiv - Cell Biology 2024Quote: ... 500 ng of total RNA with RIN values of 8.3-10 underwent polyA selection and TruSeq library preparation according to instructions provided by Illumina (TruSeq Stranded mRNA LT Kit ...
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bioRxiv - Developmental Biology 2024Quote: ... using TruSeq RNA unique dual index adapters (Illumina). Libraries were quantified by qPCR on a CFX96/C1000 cycler (Bio-Rad) ...
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bioRxiv - Cell Biology 2024Quote: ... Sequencing of the libraries was performed on a Miseq sequencer (Illumina) in pair-end ...
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bioRxiv - Biochemistry 2024Quote: ... Base calling was done by Illumina Real Time Analysis (RTA ...
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bioRxiv - Molecular Biology 2024Quote: ... rRNA depletion was performed with a Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina, accompanied by a TruSeq Stranded Total RNA Kit) ...
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bioRxiv - Microbiology 2024Quote: ... and a Kapa Library Quantification Kit (Illumina, Inc., San Diego, CA, USA), and a quality check of the samples was conducted using the 4150 TapeStation system (Agilent Technologies ...
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bioRxiv - Microbiology 2024Quote: ... The barcoded DNA libraries were sequenced using Illumina MiSeq (Illumina, Inc., San Diego, CA, USA) with 2 × 250 bp paired end reads.
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bioRxiv - Immunology 2024Quote: ... Paired-end high-throughput sequencing (125 cycles) was performed using a NovaSeq instrument (Illumina). Sequencing reads were processed by using the 10X Genomics CellRanger pipeline and further analyzed using the Seurat R package ...
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bioRxiv - Biophysics 2024Quote: ... we aligned the trimmed reads to the human reference genome (hg19, downloaded from Illumina’s iGenomes) using Hisat2 63 with “-k 1 – no-spliced-alignment –phred33” parameters and stored them as binary alignment maps (BAM) ...
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bioRxiv - Cancer Biology 2024Quote: ... before deep sequencing on NovaSeq 6000 (Illumina) in the required format to yield at least 20,000 reads per cell for Gene expression and 5,000 reads per cell for TCR libraries.
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bioRxiv - Cancer Biology 2024Quote: ... RNA-Seq libraries were constructed and sequenced following standard protocols (Illumina) at the Genomics and Epigenetics Core Facility of WCM ...
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bioRxiv - Cancer Biology 2024Quote: ... we used Dragen (Illumina) (37 ...
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bioRxiv - Plant Biology 2024Quote: ... Libraries were sequenced by Illumina NovaSeq to generate 150 bp paired-end reads ...
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bioRxiv - Immunology 2024Quote: ... 150×150 cycle paired-end sequencing was performed using a S4 reagent Kit v1.5 (Cat# 20028312; Illumina). 8-11 million reads were generated per sample and were aligned to the GRCm38 mouse reference genome ...
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bioRxiv - Microbiology 2024Quote: ... The amplicon libraries were paired-end sequenced (2 × 300 bp) on the Illumina MiSeq using v3 chemistry (Illumina, USA). 10 to 20% PhiX control library was added to mitigate low diversity library effects.
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bioRxiv - Microbiology 2024Quote: ... 1 U PCRBIO HiFi Polymerase (PCR Biosystems) and 10 µL of Nextera adaptor mix (Illumina). PCR conditions were 95°C ...
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bioRxiv - Molecular Biology 2024Quote: ... rRNA depletion was conducted with a Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina, accompanied by a TruSeq Stranded Total RNA Kit) ...
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bioRxiv - Bioengineering 2024Quote: ... which were sequenced following the Illumina protocol on the NovaSeq instrument (Illumina), resulting in approximately 20 million paired-end reads per library ...
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bioRxiv - Cancer Biology 2024Quote: ... Single cell gene expression libraries were generated using the 10X Genomics Chromium platform and sequenced on a NovaSeq 6000 (Illumina). Processing of scRNA-seq data was performed as follows ...
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bioRxiv - Cell Biology 2024Quote: ... were downloaded from Illumina’s iGenomes website (http://support.illumina.com/sequencing/sequencing_software/igenome.html) ...
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bioRxiv - Cell Biology 2024Quote: ... The pooled libraries of the samples were sequenced using NextSeq 500 (Illumina) in 76-base-pair single-end reads ...
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bioRxiv - Molecular Biology 2024Quote: ... Illumina NovaSeq 6000 sequencing machine (Illumina, San Diego, CA) was used to perform RNA sequencing at a strand specific 100 cycle paired-end resolution ...
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bioRxiv - Molecular Biology 2024Quote: ... 100 bases were sequenced from both ends using an Illumina HiSeq2500 instrument according to the manufacturer’s instructions (Illumina). Trimmed reads were mapped to the Cryptococcus and S ...
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bioRxiv - Cancer Biology 2024Quote: Raw FASTQ data was downloaded from Illumina BaseSpace ...
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bioRxiv - Cancer Biology 2024Quote: ... Ribosomal RNA removal and library preparation was performed using ScriptSeq Complete Gold Kit (Illumina #BEP1206). High-throughput sequencing was performed on an Illumina NextSeq 500 platform (mid-output ...
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bioRxiv - Cancer Biology 2024Quote: ... Pooled libraries were sequenced on a HiSeq 4000 instrument (Illumina) or a NovaSeq 6000 instrument with 2× 150bp paired-end reads for genomic DNA and circular DNA libraries and 2× 75 bp paired-end reads for cDNA libraries.
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bioRxiv - Developmental Biology 2024Quote: ... cells (sample of all leg disc cells) from three different replicates were sent to Heidelberg genomic platform EMBL for high-throughput mRNA sequencing (NextSeq 500/Illumina). They generated mRNA libraries with NEB RNA Ultra kit (New England Biolabs E7770L ...
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bioRxiv - Developmental Biology 2024Quote: BCL files were converted to FastQ files on Galaxy using bcl2fastq2 (v2.20.0.422 – Illumina). Reads were mapped to the reference genome (Ensembl build 11 ...
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bioRxiv - Molecular Biology 2024Quote: ... Base call data was converted and demultiplex to FASTQ files by bcl2fastq Conversion Software v1.1.0 (Illumina). Quality control of each dataset was done using FastQC tool.
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bioRxiv - Molecular Biology 2024Quote: ... The RNA sequencing was performed at BCM Human Genome Sequencing Center using NovaSeq 6000 platform (Illumina). The raw fastq files were first quality checked using FastQC v0.11.8 software (http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/) ...
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bioRxiv - Molecular Biology 2024Quote: ... paired-end cDNA libraries were prepared from 10 μg of total RNA by polyA selection using the TruSeq Stranded mRNA kit (Illumina) according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2024Quote: ... DNA-seq libraries were prepared using the kit TruSeq DNA PCR-Free (Illumina). Then ...
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bioRxiv - Cell Biology 2024Quote: ... The libraries were prepared using Illumina TruSeq Small RNA Sample Preparation Kit (RS-930-1012, Illumina, CA). Three biological replicates were sequenced for each treatment.
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bioRxiv - Cell Biology 2024Quote: ... mRNA sequencing libraries were prepared using a TruSeq RNA kit from Illumina and sequenced by Illumina HiSeq 2500.
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bioRxiv - Cell Biology 2024Quote: Genome integrity was assessed by the Infinium HumanCytoSNP-12 v2.1 BeadChip array (Illumina) using genomic DNA from iPSC lines (UCL Genomics) ...
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bioRxiv - Cell Biology 2024Quote: ... The BlueFuse Multi software (https://www.illumina.com/clinical/clinical_informatics/bluefuse.html) (Illumina) was used to generate karyograms ...
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Emerging cooperativity between Oct4 and Sox2 governs the pluripotency network in mouse early embryosbioRxiv - Developmental Biology 2024Quote: ... and transferred to 3.0 μl Tn5 transposome mixture (0.25 μl Tn5 transposome, 2.5 μl tagmentation buffer, Illumina, FC-121-1030; 0.25 μl H2O). The samples were incubated in 37 °C water bath for 30 min ...
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bioRxiv - Microbiology 2024Quote: ... (India) using the Illumina HiSeq 4000 platform (Illumina). Analysis was performed by Rockhopper v 2.0.3 ...
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bioRxiv - Cell Biology 2024Quote: ... Chromatin was sequenced using Illumina HiSeq platform (Illumina, Inc.) (50bp single-end reads) ...