Labshake search
Citations for Illumina :
201 - 250 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Cancer Biology 2024Quote: ... Isolated nuclei were resuspended in 50 μL of Transposition mix (Illumina Tagment DNA Enzyme 100 nM, TD-Buffer 2X (kit from Illumina, 20034197), PBS 0.33% ...
-
bioRxiv - Neuroscience 2024Quote: ... containing approximately 40,000 nuclei were re-suspended in the transposition mix (25μL 2x TD Buffer (Illumina Cat no. FC-121-1030), 2.5μL Tn5 Transposes (Illumina Cat no ...
-
bioRxiv - Cancer Biology 2024Quote: ... Then the cells were precipitated and kept on ice and subsequently resuspended in 25 μl 2X TD Buffer (Illumina Nextera kit), 2.5 μl Transposase enzyme (Illumina Nextera kit ...
-
bioRxiv - Microbiology 2020Quote: ... and sequenced with 2×250 bp cycles of v2 Miseq chemistry (Illumina, San Diego, CA). Replicate reactions from each sample were pooled and gel purified using the Blue Pippin Prep system (Sage Science ...
-
bioRxiv - Evolutionary Biology 2021Quote: ... and small-scale sequencing (2 x146bp) on an iSeq platform (Illumina, San Diego, CA, US). Subsequent equimolar pooling of individual libraries from each plate was performed prior to performing large-scale paired-end sequencing (2 × 146 bp ...
-
bioRxiv - Synthetic Biology 2022Quote: ... read length 2 × 175 bp using the MiSeq platform (Illumina Inc., San Diego, CA, USA). The library preparation and sequencing were performed in the Institute of Genomics Core Facility ...
-
bioRxiv - Cancer Biology 2020Quote: ... 2 x 150 cycles (NextSeq 500/550 Mid Output v2 kit, Illumina, San Diego, CA).
-
bioRxiv - Immunology 2021Quote: The 150×2 paired-end sequencing was conducted on a Novaseq sequencer (Illumina, CA, USA) producing 612,180,910 raw paired reads on average.
-
bioRxiv - Genomics 2021Quote: ... the 18 individual libraries were pooled using equimolar amounts and sequenced by Illumina NovaSeq 2×150 cycles run for a total of 0.5 lane (Illumina Inc., CA, U.S.)
-
bioRxiv - Microbiology 2024Quote: ... Sequencing was performed in 2 x 250 bp paired-end format (Illumina, San Diego, CA). A total of 168 samples were sequenced on two separate sequencing runs at a similar read depth ...
-
bioRxiv - Molecular Biology 2024Quote: ... utilizing a paired-end 150 bp (2×150 bp) configuration (Illumina Inc., San Diego, CA). The sequencing service was provided by Novogene Co. ...
-
bioRxiv - Microbiology 2022Quote: ... and then sequenced at 2×250bp on an Illumina MiSeq (Illumina, San Diego, CA, USA) at the Genomics Core Facility ...
-
bioRxiv - Microbiology 2023Quote: ... using a 600 (2×300 base pair) cycle reagent kit (Illumina Inc, San Diego, CA).
-
bioRxiv - Microbiology 2024Quote: ... the SARS-CoV-2 whole genome was recovered using Illumina COVIDSeq Test (Illumina, CA, USA) and the ARTIC 4.1v primer set (https://artic.network/) ...
-
bioRxiv - Microbiology 2020Quote: ... Samples were sequenced using the MiSeq 2×250 bp and HiSeq 2×150 bp paired-end read technology (Illumina, San Diego, CA, USA) as previously described [78] ...
-
bioRxiv - Genomics 2024Quote: ... and sequenced across three lanes of a HiSeq or pooled for sequencing on a NovaSeq S1 using 2×75 (HiSeq) or 2×101 (NovaSeq) read lengths (Illumina, San Diego, CA). Variant calling and neoantigen prediction were performed as described previously (22,23).
-
bioRxiv - Molecular Biology 2022Quote: ... The supernatant was discarded and the pellet (cell nuclei) was resuspended in 50 uL transposition mix (50% v/v 2X Tagment DNA (TD) Buffer (Illumina, Cambridge, UK), 32% v/v PBS ...
-
bioRxiv - Cell Biology 2021Quote: ... A one-step gentle membrane permeabilization and DNA transposition was performed by adding 50ul transposition mixture (25 uL TD buffer 2X, 2,5uL of transposase TDE1 (Illumina, San Diego, California), 0,5 uL digitonin 0,1% (Promega ...
-
bioRxiv - Immunology 2020Quote: ... The cell pellets were resuspended in 50 μl transposition mix (25 μl 2X TD buffer, 2.5 μl transposase (Illumina, FC-121-1030), 16.5 μl PBS ...
-
bioRxiv - Molecular Biology 2020Quote: ... The cell pellet was resuspended in 50 μl transposition mix (25 μl 2X TD buffer, 2.5 μl transposase (Illumina, FC-121-1030), 16.5 μl PBS ...
-
bioRxiv - Bioengineering 2022Quote: ... the organoid was then resuspended in a direct permeabilization/tagmentation mastermix (25μl TD buffer (from Illumina Nextera XT DNA Library Prep Kit), 2.5μl Tn5 ...
-
bioRxiv - Immunology 2024Quote: ... cDNA was diluted to an average of 200 pg/µl and 100 pg cDNA from each cell was tagmented by adding 1 µl TD and 0.5 µl ATM from a Nextera XT DNA Library Preparation Kit (Illumina: FC-131-1096) to 0.5 µl diluted cDNA in each well of a fresh 384-well plate ...
-
bioRxiv - Genomics 2022Quote: ... SW-8046-2) from libraries prepared using the Nextera XT DNA kit (Illumina, Inc, San Diego, CA, and sequenced on Illumina HiSeq4000 (2×150 bp). WGS data was obtained from six C ...
-
bioRxiv - Plant Biology 2022Quote: ... We prepare 12 cDNA libraries (3 individuals □ 2 sampling times (dawn and dusk) □ 2 localities) using the TruSeq RNA-seq library prep kit from Illumina (Illumina, Inc., CA, USA) according to manufacturer’s instructions ...
-
bioRxiv - Cancer Biology 2022Quote: ... generating 2 × 75 base read pairs or on a NovaSeq 6000 generating 2 × 150 base read pairs using standard settings (Illumina, San Diego, CA, USA). BCL output from the sequencing platform was converted to FASTQ using Illumina’s bcl2fastq tool (versions 2.17 to 2.20 ...
-
bioRxiv - Genomics 2024Quote: SARS-CoV-2 genome sequencing was performed on samples that were SARS-CoV-2 RNA-positive using the COVIDSeq Test (Illumina, San Diego, CA, USA). Libraries were sequenced on the Illumina NextSeq2000 instrument using 2×109 paired end reads ...
-
bioRxiv - Genomics 2020Quote: ... RNA sequencing libraries were prepared using the ScriptSeq version 2 kit (Illumina, San Diego, CA, USA). 2 × 75 bp paired end sequencing reads were obtained using an Illumina HiSeq 2500 ...
-
bioRxiv - Microbiology 2020Quote: ... Samples were then sequenced with 2×250 bp cycles of v2 Miseq chemistry (Illumina, CA, USA).
-
bioRxiv - Microbiology 2020Quote: 2×251 paired end sequencing was conducted on the Illumina MiSeq platform (Illumina, San Diego, CA) using a Nextera XT kit (Illumina ...
-
bioRxiv - Microbiology 2022Quote: ... Sequencing was performed with MiSeq V2 Paired End 2×250 Chemistry (Illumina Inc., San Diego, CA) at the Duke Center for Genomic and Computational Biology or the University of Colorado Anschutz Medical Campus Genomics and Microarray Core.
-
bioRxiv - Genetics 2021Quote: ... and paired-end sequenced (2×150 cycles) using the Illumina platform (Novaseq, Illumina, San Diego, CA).
-
bioRxiv - Microbiology 2020Quote: ... and sequences were generated using a MiSeq instrument (2 × 250 cycles; Illumina, San Diego, CA, USA) at the Kansas State University Integrated Genomics Facility (Manhattan ...
-
bioRxiv - Developmental Biology 2021Quote: ... sequencing was progressed as paired-end (2×150bp) using Illumina NovaSeq 6000 sequencer (Illumina, CA, USA). Low quality reads were filtered according to the following criteria ...
-
bioRxiv - Cell Biology 2023Quote: All samples were sequenced 2×80 on a NEXTseq 500 sequencer (Illumina, San Diego, CA, USA) in the Biopolymers Facility at Harvard Medical School ...
-
bioRxiv - Neuroscience 2023Quote: ... Samples underwent 250 × 2 paired-end sequencing on an Illumina MiSeq (Illumina, San Diego, CA, USA).71 Raw fastq files were processed using the DADA2 pipeline in R ...
-
bioRxiv - Molecular Biology 2023Quote: ... DNA was sequenced by SourceBioScience on Illumina MiSeq 2 × 300 bp runs (Illumina, San Diego, CA). Illumina ...
-
bioRxiv - Cell Biology 2023Quote: ... Paired-end 150 × 2 sequencing was performed by Novogene (Sacramento, CA) using a NovaSeq 6000 (Illumina).
-
bioRxiv - Developmental Biology 2021Quote: ... The nuclei were suspended in a transposition mix (TD Tagment DNA Buffer, Illumina Catalog No. 15027866, and TDE1 Tagment DNA Enzyme, Illumina Catalog No. 15027865), and incubated at 37°C to generate DNA fragments ...
-
bioRxiv - Molecular Biology 2021Quote: ... Beads were resuspended in 25 μl of 2X TD Buffer and combined with Tn5 enzyme from the Nextera DNA Sample Preparation Kit (Illumina, FC-121-1030) and water to final volume 50 μl ...
-
bioRxiv - Genomics 2020Quote: ... The dissolved DNA was then tagmented using 0.6 μl TD Tagmentation buffer and 0.3 μl ATM Tagmentation enzyme from Nextera DNA Library Prep Kit (Illumina, catalog no. FC-121-1030) for 5min at 55 °C ...
-
bioRxiv - Genomics 2020Quote: ... The resulting nuclei were resuspended in 50µl of transposition reaction buffer (25µl of 2x TD buffer from the Nextera kit, Illumina; 2.5µl of Tn5 transposase enzyme from the Nextera kit, Illumina; 22.5µl of nuclease free water), and incubated at 37°C for 90 min for chromatin tagmentation ...
-
bioRxiv - Genetics 2020Quote: ... one unit of input was diluted to 30 μl and mixed with 50 μl of 2x TD buffer and 20 μl of TDE (Illumina 20034197, Lot 20436911), and incubated at 55 °C for 10 min (Note ...
-
bioRxiv - Genetics 2021Quote: ... The nuclei were resuspended on ice in the transposition reaction mix (2x TD Buffer, 2.5μL Tn5 Transposes and Nuclease Free H2O) (Illumina Cat #FC-121-1030, Nextera) on ice and the transposition reaction was incubated at 37°C for 45 min ...
-
bioRxiv - Genomics 2023Quote: ... about 1.5 ng purified pre-amplified cDNA sample was fragmented in four 20 μl tagmentation mix (10 μl 2x TD buffer, 5 μl Nextera XT (Illumina, FC-131-1096), and 5 μl cDNA sample ...
-
bioRxiv - Cancer Biology 2023Quote: ... The cell pellet was resuspended in Illumina TD buffer and 2.5 µl of Tn5 enzyme was added to the transposition reaction (Illumina, Cat # FC-121-1030). Nuclei were incubated at 37°C for 60 minutes and fragmented DNA was purified using the MinElute kit (Qiagen ...
-
bioRxiv - Immunology 2024Quote: ... Nuclei were resuspended in the Nextera transposition reaction mix (25 μL 2x TD Buffer, 2.5 μL Nextera Tn5 transposase (Illumina Cat #FC-121-1030), and 22.5 μL nuclease free H2O ...
-
bioRxiv - Immunology 2024Quote: ... 60,000 naive CD4+ T cells from each biological replicate were spun down for nuclei isolation followed by transposition using Tn5 transposase from the Tagment DNA (TD) TDE1 Enzyme and Buffer Kit (Illumina, cat. no. 20034197). After transposition ...
-
bioRxiv - Developmental Biology 2021Quote: ... and were sequenced on the Illumina NovaSeq (>70 million 2×150 bp sequences) (Illumina, San Diego, CA).
-
bioRxiv - Cell Biology 2020Quote: ... and samples were subsequently sequenced (paired end, 2×250bp) on a HiSeq1500 machine (Illumina, San Diego, CA). Bio-informatic analysis of the data was done with an in-house developed pipeline based on Picard Tools (Broad Institute ...
-
bioRxiv - Genomics 2020Quote: ... Amplicons were paired-end (2 × 250 nt) sequenced on an Illumina NovaSeq (Illumina, San Diego, CA, USA).