Labshake search
Citations for Illumina :
201 - 250 of 1035 citations for Small Airway Epithelial Cell since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Plant Biology 2020Quote: ... and ∼25 ng of sRNA was used for library construction with the TruSeq Small RNA Prep Kit (Illumina) following the manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2022Quote: Small RNA libraries were made using the Illumina TruSeq Kit following the manufacturer’s protocol (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Bioengineering 2023Quote: ... 5μl of each RNA sample was used as input into a TruSeq Small RNA library Preparation kit (Illumina) per manufacturer’s instruction ...
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bioRxiv - Evolutionary Biology 2022Quote: Small RNA and RNA samples were sequenced using Fasteris (https://www.fasteris.com/en-us/. After 2S RNA depletion the small RNA samples were sequenced using Illumina NextSeq with a read length of 75bp ...
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bioRxiv - Genomics 2023Quote: The dRNA-seq libraries were constructed using Illumina Small RNA Sample Prep Kit (Illumina, San Diego, CA, USA) following the vendor’s instruction with some modifications ...
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bioRxiv - Genomics 2021Quote: ... Subject recruitment and study procedures for EVA-PR have been described elsewhere.31 Genome-wide DNA methylation was measured in 488 nasal epithelial samples using the Infinium HumanMethylation450 BeadChip arrays (Illumina, San Diego, CA). The preprocessing and quality control (QC ...
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bioRxiv - Biochemistry 2019Quote: ... For whole genome sequencing of mouse RNA a library was generated with Truseq Small RNA Library Preparation kit (Illumina) according to the manufacturer’s protocol ...
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bioRxiv - Immunology 2021Quote: ... High-quality RNA was processed using an Illumina TruSeq RNA sample prep kit v2 or TruSeq Small RNA Sample Prep kit following the manufacturer’s instructions (Illumina). Clusters were generated using TruSeq Single-Read Cluster Gen ...
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bioRxiv - Neuroscience 2020Quote: ... The recovered RNA was used to prepare a cDNA library using a TruSeq Small RNA Library Preparation Kit (Illumina) according the manufacturer’s directions ...
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bioRxiv - Plant Biology 2021Quote: ... Pre-Release Protocol Rev.A with TruSeq RNA Sample Prep Kit and TruSeq Small RNA Sample Prep Kit (Illumina Inc.). The library was reverse transcribed ...
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bioRxiv - Neuroscience 2020Quote: ... cDNA library and sequencing have been performed according to manufactureŕs protocol (NEBNext Small RNA library prep set for Illumina). Next generation sequencing was performed on HiSeq 2000 platform.
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bioRxiv - Molecular Biology 2022Quote: ... generally according to the manufacturer’s instructions and using custom primer pairs compatible with TrueSeq Small RNA Sample Preparation Kit (Illumina), bearing a unique tag for each library ...
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bioRxiv - Genomics 2024Quote: ... Small RNA library preparation and sequencing were carried out at the Max Planck Institute facility in Freiburg (Germany) with Truseq Small RNA library preparation kit as per manufacturer’s protocol (Illumina). Total RNA extracted from 1 st instar nymphs was also used to produce and sequence RN-Seq libraries (Macrogen ...
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bioRxiv - Molecular Biology 2023Quote: Small RNA libraries were prepared using the Illumina TruSeq small RNA library preparation kit according to the manufacturer’s protocol (RS-200-0012, Illumina).
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bioRxiv - Developmental Biology 2021Quote: ... obtained from TBXT shRNA sOPTiKD hESC in the presence and absence of Tetracycline (three biological replicates) were harvested and samples were prepared using the Illumina Tagment DNA Enzyme and Buffer Small Kit (Illumina), 1% Digitonin (Promega ...
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bioRxiv - Molecular Biology 2020Quote: ... About 120 ng of bisulfite-converted RNA were used to generate Bisulfite-seq libraries using the TruSeq Small RNA preparation kit (Illumina). Before library preparation ...
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bioRxiv - Molecular Biology 2020Quote: ... At least 50 ng of r-RNA depleted RNA was used to generate sequencing libraries using the True-seq small RNA library prep kit (Illumina). All libraries were barcoded and sequenced in parallel on a Next-seq platform for 400 million reads to obtain 75 bp single end reads.
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bioRxiv - Systems Biology 2019Quote: ... Set D: indices 37–48 (Illumina, RS-200-0048)) (TruSeq Small RNA Library Prep Kit Reference Guide (Illumina, 15004197 Rev.G)) ...
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CD8+ T-cell-mediated immunoediting influences genomic evolution and immune evasion in murine gliomasbioRxiv - Cancer Biology 2019Quote: Mutational burden was called by analysis of germline and somatic variation by Strelka2 Small Variant Caller (Illumina; San Diego, CA). The germline identification employed a tiered haplotype model adaptively selected between assembly and alignment-based haplotyping at each variant locus ...
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Screening and identification of MicroRNAs expressed in perirenal adipose tissue during rabbit growthbioRxiv - Developmental Biology 2019Quote: ... Sequencing libraries were prepared using TruSeq Small RNA Sample Prep Kits according to the manufacturers protocols (Illumina, San Diego, USA). Briefly ...
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bioRxiv - Plant Biology 2021Quote: Indexed sRNA libraries were constructed from RNA isolated from vesicles with the TruSeq® Small RNA Library Prep Kit (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Plant Biology 2020Quote: ... The 16 to 42-nt fraction was isolated by electrophoresis and treated with T4 polynucleotide kinase before library preparation using the TruSeq Small RNA Library Preparation Kit (Illumina). Sequencing was performed on the HiSeq 4000 platform (Illumina).
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bioRxiv - Molecular Biology 2022Quote: ... Both 5’-tir-P enriched and oxidized samples were subjected to a sRNA library construction by the TruSeq Small RNA Library Preparation kit (Illumina). The resulting libraries were sent to BGI (Hongkong ...
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bioRxiv - Immunology 2022Quote: ... Cells were prepared for SORT-seq as previously described.23 Illumina sequencing libraries were then prepared with the TruSeq small RNA primers (Illumina) and sequenced single-end at 75 bp read length with 75.000 reads per cell on a NextSeq500 platform (Illumina) ...
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bioRxiv - Neuroscience 2022Quote: ... and finally converted into DNA libraries using custom rpi primers (RNA PCR Primer Index) adapted from the Truseq Small RNA kit (Illumina)106 ...
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bioRxiv - Cancer Biology 2022Quote: ... the ADT fraction was amplified for 10 cycles with SI-PCR oligo (10x Genomics) and TruSeq Small RNA RPI-x (Illumina) primers to index the samples ...
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bioRxiv - Plant Biology 2021Quote: ... including larger than expected correlations between samples with certain barcode combinations (Supplementary Note 1) and a small but significant number of reads mapping to impossible barcode combinations (combinations of CEL-seq and Illumina barcodes that were not used in the experiment) ...
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bioRxiv - Developmental Biology 2021Quote: ... sRNA libraries for dicer-null embryos were prepared using Illumina TruSeq Small RNA Sample Prep kit (Illumina, RS-200-0012) and sequenced on HiSeq 50bp single-end sequencing platform ...
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bioRxiv - Developmental Biology 2022Quote: ... library preparation was done following the CEL-Seq2 protocol [41] to prepare a cDNA library for sequencing using TruSeq small RNA primers (Illumina). The DNA library was paired-end sequenced on an Illumina Nextseq™ 500 ...
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bioRxiv - Cancer Biology 2022Quote: ... The bead-bound fragments are then amplified and sample indexed using P5 and RPI-X (binds the TruSeq Small RNA Read 2 handle and adds a sample index and P7 Illumina sequencing handle ...
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bioRxiv - Plant Biology 2021Quote: ... Indexed sRNA libraries were constructed from RNA isolated from vesicles with the TruSeq ® Small RNA Library Prep Kit (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2022Quote: Cells were incubated with Nextera Tn5 Transposase and 2x TD reaction buffer of the Illumina Tagment DNA Enzyme and Buffer Small Kit (Illumina) for 30 minutes at 37°C ...
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bioRxiv - Neuroscience 2022Quote: ... library preparation was done following the CEL-Seq2 protocol [50] to prepare a cDNA library for sequencing using TruSeq small RNA primers (Illumina). The DNA library was paired-end sequenced on an Illumina Nextseq™ 500 ...
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bioRxiv - Neuroscience 2023Quote: ... We also separately made a uniquely indexed miRNA library from each sample using the Illumina Small RNA library kit (Illumina). We made an equimolar pool of the mRNA libraries and a separate equimolar pool of the miRNA libraries ...
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bioRxiv - Plant Biology 2023Quote: ... Libraries were made using the TruSeq Small RNA Library Preparation Kit following the manufacture protocol (Illumina, San Diego, CA, USA) and then sequenced by Illumina NextSeq 550.
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bioRxiv - Microbiology 2023Quote: ... The RNA was dephosphorylated in 3’ and then phosphorylated in 5’ to generate cDNA libraries using the NebNext Small RNA Sample Prep kit with 3’ sRNA Adapter (Illumina) according to the manufacturer’s protocol with 12 cycles of PCR amplification in the last step followed by DNA purification with Monarch PCR DNA cleanup kit (NEB) ...
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bioRxiv - Molecular Biology 2023Quote: ... Sequencing libraries were generated using Phusion DNA polymerase with TruSeq small-RNA adaptors and sequenced at NOVOGene USA using NextSeq500 (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... library preparation was done following the CEL-Seq2 protocol43to prepare a cDNA library for sequencing using TruSeq small RNA primers (Illumina). The DNA library was paired-end sequenced on an Illumina Nextseq™ 500 ...
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bioRxiv - Molecular Biology 2024Quote: ... Extracted total RNA was send to Azenta Life Sciences for library preparation (sRNA: NEBNext Small RNA Library Prep Set for Illumina; mRNA: NEBNext Ultra II RNA Library Prep Kit for Illumina) and paired-end Illumina sequencing (NovaSeq 2×150bp).
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bioRxiv - Plant Biology 2024Quote: ... All library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) and sequenced (single-end, 75 nt) using the NextSeq 500 platform (Illumina).
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bioRxiv - Molecular Biology 2024Quote: ... Extracted total RNA was send to Azenta Life Sciences for library preparation (sRNA: NEBNext Small RNA Library Prep Set for Illumina; mRNA ...
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bioRxiv - Evolutionary Biology 2019Quote: ... 3 µL of each sample (2.24 ng) was transferred to a new plate with a small quantity of a NexteraTM tagment DNA enzyme (Illumina catalogue #15027865) to add adapters (tagmentation) ...
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bioRxiv - Molecular Biology 2021Quote: ... performed libraries of all samples corresponding to DNA-associated RNA molecules and small RNA high-throughput sequencing (high-throughput sequencing on Illumina Hiseq 2500 or Illumina MiSeq). Totally ...
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bioRxiv - Genomics 2021Quote: ... Samples were concentrated using a centrifugal evaporator Speed Vac® to a final volume of 5 μl and we started the TruSeq Small RNA Sample Preparation Kit (Illumina) protocol according to manufacturer’s instructions ...
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bioRxiv - Genomics 2021Quote: For miRNA expression analysis 2 µg of the small RNA was polyadenylated using the Poly(A) Tailing kit (epicenter-An Illumina company) following the manufacturer’s protocol ...
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bioRxiv - Genomics 2022Quote: ... These products were then used for index PCR using the SI-PCR Primer from the 10X kit for the i5 and one of the small RNA TrueSeq index primers for the i7 (Illumina #15004197).
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bioRxiv - Genomics 2022Quote: ... After purifying the Sample Tag PCR1 product indexing PCR was done following instructions of the MULTI-seq protocol where small RNA TrueSeq indexing primers (Illumina #15004197) were used for i7 and the Forward Primer from the BD WTA kit was used for i5.
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bioRxiv - Cell Biology 2023Quote: The PCR primers introduce the full-length adaptor sequence required for Illumina sequencing (for details see Illumina small RNA PCR primers). PCR was performed in 12.5 μL using half of the ranhexRT sample as a template [1× KAPA HiFi HotStart ReadyMix (KapaBiosystems KK2602) ...
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bioRxiv - Genomics 2023Quote: ... and we constructed the directional RNA-seq libraries using Illumina’s TruSeq Small RNA Sample Prep Kit (Illumina, San Diego, CA, USA), so that multiplex sequencing can be achieved by using the barcoded PCR primers.
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bioRxiv - Molecular Biology 2021Quote: ... 1 ug of treated RNA was then input into the Illumina TruSeq Small RNA Library Preparation Kit (Illumina; Cat #: RS-200-0012) with 11 cycles of PCR amplification ...