Labshake search
Citations for Illumina :
1501 - 1550 of 2244 citations for 8 Benzyloxy 5 R 2 bromo 1 hydroxyethyl 1H quinolinone since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2021Quote: ... Sequencing of the pooled libraries was performed using an Illumina MiSeq benchtop sequencer and 2×250bp paired-end reads MiSeq v2 kit-500 cycles reagents (Illumina, USA). Raw reads were trimmed of remnant sequencing adapters sequences and low-quality regions (Phred score < Q20 ...
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bioRxiv - Microbiology 2020Quote: ... Sequencing of the resulting library was carried out from both ends (2×300 bp) with the 600-cycle MiSeq Reagent Kit v3 on MiSeq (Illumina, USA) and the adapters trimmed from the resulting reads at the facility.
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bioRxiv - Microbiology 2020Quote: ... Equimolar pooled library was sequenced on an Illumina MiSeq platform using 2×300bp reagent kit (Miseq reagent kit v3; Illumina Inc.) for paired-end sequencing ...
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bioRxiv - Immunology 2021Quote: ... Final libraries were pooled and sequenced using a High output single-end 75 cycle (version 2) sequencing kit using the Illumina Nextseq 550 platform (Illumina, USA).
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bioRxiv - Immunology 2021Quote: The genomes of S.Tm and evolved derivatives were fully sequenced by the Miseq system (2×300bp reads, Illumina, San Diego, CA) operated at the Functional Genomic Center in Zürich ...
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bioRxiv - Genomics 2021Quote: ... DNA fragments of the SARS CoV-2 genome were hybridized with biotinylated respiratory virus oligos (Illumina Inc., San Diego, CA, USA). The DNA fragments hybridized with the custom oligos were captured using streptavidin magnetic beads ...
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bioRxiv - Genomics 2021Quote: For miRNA expression analysis 2 µg of the small RNA was polyadenylated using the Poly(A) Tailing kit (epicenter-An Illumina company) following the manufacturer’s protocol ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Libraries were sequenced at the Texas A&M Agrilife Bioinformatics and Genomics Service on one NovaSeq 6000 S4 lane at 26.1 ± 5.8 depth of coverage per sample across the full genome (2 s.d.) (Illumina, San Diego, CA, USA). Three of the parent libraries-CA56 ...
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bioRxiv - Microbiology 2022Quote: ... spiking with PhiX and sequencing with 2 x 250 bp paired-end reads with Illumina MiSeq (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2022Quote: ... Equimolar libraries were pooled and subjected to Illumina NovaSeq 6000 sequencing at 2 × 150 bp (Illumina, San Diego, CA, United States). Shotgun whole metagenome sequencing was performed at the Genome Sciences and Bioinformatics Core at the Pennsylvania State University College of Medicine ...
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bioRxiv - Plant Biology 2022Quote: ... Eighteen cDNA libraries were prepared using the Illumina TruSeq RNA Sample preparation Kit v.2 according to the low-throughput protocol (Illumina, USA). Each library corresponded to three biological replicates of wild-type tomato fruit at MG and RR stages 3 days after treatment ...
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bioRxiv - Microbiology 2022Quote: ... and the cleaned pool was sequenced on the MiSeq using v2 2×250 base pair kit (Illumina, Inc, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... A HiSeqX system was applied and 2 × 150 base read pairs were generated using standard settings (Illumina, San Diego, CA, USA). Preprocessing was performed as described by Priestley et al (26) ...
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bioRxiv - Plant Biology 2022Quote: ... mRNAs were sequenced in a HiSeq 3000 sequencing system with 2 × 125 bp paired-end sequences (Illumina HiSeq SBS Kit v4) by the Genotoul bioinformatics platform ...
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bioRxiv - Bioengineering 2022Quote: ... The libraries were pooled to a final concentration of 2 nM and run on a NextSeq sequencer (Illumina, San Diego, CA). The small RNA sequencing (sRNA-Seq ...
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bioRxiv - Cancer Biology 2022Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer’s instructions ...
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bioRxiv - Plant Biology 2024Quote: ... and then sequenced on half lane NovaSeq 6000 using the paired-end 2×50 cycle chemistry (Illumina, San Diego, CA, USA). Data is deposited under accession number PRJEB60373.
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bioRxiv - Microbiology 2024Quote: ... and shotgun-sequenced using the Illumina MiSeq platform with a read length of 2 × 150 bp (Illumina, San Diego, CA, USA). For each phage ...
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bioRxiv - Neuroscience 2022Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2), according to the manufacturer’s instructions (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... pooled equimolarily and sequenced on an Illumina MiSeq v3 2×300 base pair (bp) platform (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Molecular Biology 2022Quote: ... Sequencing libraries were prepared at GenomeScan (Netherlands) and submitted to 2×150 pair-end sequencing in a NovaSeq™ 6000 sequencer (Illumina). Reads were mapped to the reference LdBPK282-V2 genome (11 ...
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bioRxiv - Molecular Biology 2023Quote: ... PCR-amplified libraries were quantified on a Bioanalyser and appropriately diluted and multiplexed for deep sequencing (Illumina MiSeq 2×75 bp).
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bioRxiv - Microbiology 2023Quote: ... Samples were equimolarly pooled with 10% PhiX control DNA and sequenced on an Illumina MiSeq using a MiSeq 2 × 250 v2 kit (Illumina, Inc.). Due to the number of samples ...
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bioRxiv - Microbiology 2023Quote: ... Samples were pooled and sequenced on an Illumina NextSeq 500 using paired-end (2×150bp) mode (Illumina, Inc., San Diego, CA).
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bioRxiv - Microbiology 2023Quote: ... Equal amounts of PCR product (2 µl 4nM) were pooled and sequenced on an Illumina MiSeq Sequencer (Illumina, San Diego, USA) using a paired-end 300bp V3 kit at Utrecht Sequencing Facility (www.useq.nl).
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bioRxiv - Genomics 2023Quote: ... The pooled libraries were loaded into a MiSeq system and sequenced using a MiSeq reagent kit v2 with 2 × 250 cycles (Illumina, Inc.). The MiSeq reads were assembled using Newbler assembler (v2.9).
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bioRxiv - Plant Biology 2023Quote: ... libraries were prepared from 2 µg of total RNA using the TruSeq RNA Sample Prep Kit (Illumina, Cat # FC- 122-1001) and sequenced on the HiSeq 4000 to produce at least 18 million 50 bp single-end reads.
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V1-V3 amplicon libraries were pooled in equimolar concentrations and paired-end sequenced (2 × 300 bp) on the Illumina MiSeq using v3 chemistry (Illumina, USA). 10 to 20% PhiX control library was added to mitigate low diversity library effects.
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bioRxiv - Genomics 2022Quote: ... and sequenced on a NextSeq 500 instrument (NextSeq 500/550 High Output Kit v2.5 (Illumina, 20024907, PE 2 x 75 cycles)) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... The paired-end (2×300 bp) sequencing was then performed by Macrogen using the MiSeq™ platform (Illumina, San Diego, USA)
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bioRxiv - Genomics 2023Quote: ... one PCR-Free DNA library with 350-400 bp inserts was constructed and paired-end sequenced (2 × 150 bp) on an Illumina NovaSeq 6000 system (Illumina, USA), and two libraries with 15-20 kb inserts were prepared and sequenced on a PacBio Sequel II platform using Circular consensus sequence (CCS ...
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bioRxiv - Genomics 2023Quote: ... Urine samples were then sequenced with (either the 2 x 150 bp or 2 x 75 bp configuration) to a mean depth of 30 M reads per sample on NextSeq 2000 (Illumina Inc); sequencing length did not impact gene detection efficiency (Supplementary Fig ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and paired-end sequences of 150 bp x 2 were generated using the Illumina HiSeq3000 System (Illumina, San Diego, CA, USA), targeting a yield of 2 gigabases data per sample ...
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bioRxiv - Plant Biology 2023Quote: ... Paired-end sequencing (2 × 75 bp) was performed with a NextSeq 550 System High OutPut kit (Illumina, San Diego, CA, USA). Raw reads are available at GSE227386.
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bioRxiv - Microbiology 2024Quote: ... The genomic libraries were then sequenced on a MiSeq instrument with a MiSeq Reagent Kit v2 (300 cycles; 2 x 150 bp) (Illumina Inc.).
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bioRxiv - Microbiology 2024Quote: ... (v.1.0.2) was used to check the quality of bins output by DAS Tool (HiFi and hybrid assemblies) and metabat2 (Illumina assemblies). These bins were used as input for the steps below.
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bioRxiv - Cell Biology 2024Quote: ... a minimum of 14,5 million 2×100 bp reads were generated on the Illumina NovaSeq 6000 system (Illumina Inc., CA, USA), with the NovaSeq 6000 S4 Reagent Kit (200 cycles ...
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bioRxiv - Microbiology 2024Quote: ... the gel-extracted products were pooled and prepared for sequencing via paired-end 2 × 150 bp iSeq (Illumina, San Diego, CA) sequencing in-house.
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bioRxiv - Microbiology 2024Quote: RNA from turbinate samples were sequenced in duplicate by reverse-transcription and amplification using the IDT-Swift Biosciences SARS-CoV-2 assay with v2 primers and sequenced on an Illumina NextSeq 2000 (Illumina, Inc). Reads were processed and inoculum consensus genome was generated with TAYLOR (https://github.com/greninger-lab/covid_swift_pipeline) ...
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bioRxiv - Plant Biology 2024Quote: ... Paired end read (2×150 bp) sequencing of quality libraries was performed on the NovaSeq 6000 V1.5 platform (Illumina, CA, USA). The libraries’ raw sequence read quality ...
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bioRxiv - Microbiology 2024Quote: ... The cDNA libraries were constructed using the NEBNext® Ultra II Directional RNA Library Prep Kit for Illumina® and sequenced in paired-end (2×150 bp) on a NovaSeq 6000 (Illumina). After the confirmation of multiple virus infections in H ...
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bioRxiv - Immunology 2020Quote: ... cells were lysed in lysis buffer for 1 minute and transposed with Tagment DNA Enzyme 1 (Illumina) for 30 minutes ...
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bioRxiv - Genomics 2020Quote: ... The pool was denatured with sodium hydroxide according to Illumina recommendation and spiked with 5% PhiX (PhiX control v3 Illumina Catalogue FC-110-3001) before loading (Fig 1).
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bioRxiv - Cancer Biology 2019Quote: ... To this end shotgun libraries were generated from 5-10ng of plasma DNA using the TruSeq DNA Nano Sample Preparation Kit (Illumina, San Diego, CA, USA) as previously described[35] ...
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bioRxiv - Genomics 2019Quote: ... A mate pair library with an insert size of 5 kb was created with the Nextera Mate Pair Sample Prep Kit (Illumina, San Diego, CA, USA). The paired-end and mate pair libraries were sequenced on an Illumina MiSeq machine ...
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bioRxiv - Microbiology 2020Quote: ... One nanogram of quantified DNA was sheared enzymatically at 55°C for 5 min using the Illumina Nextera XT tagmentation enzyme (Illumina, San Diego, CA, USA). Tagmented DNA fragments were enriched by 10 cycles of PCR amplification using PCR master mix and primers with the index from Illumina ...
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bioRxiv - Genomics 2020Quote: Small RNA libraries were prepared starting from 5 µL DNase treated and spike-in supplemented RNA eluate using a TruSeq Small RNA Library Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s protocol with two minor modifications(1) ...
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bioRxiv - Microbiology 2019Quote: ... and the primers V3F - 5’-CCTACGGGNGGCWGCAG-3’ and V4R – 5’-GACTACHVGGGTATCTAATCC-3’ [28] with the addition of the appropriate Illumina Nextera XT overhang adapter sequences (Illumina, San Diego, CA, USA). Following purification using a magnetic bead capture kit (Ampure ...
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bioRxiv - Plant Biology 2020Quote: ... on Thermo Fisher Scientific’s Quantstudio 5 before multiplex pooling (13-16 samples per lane in equal representation) and sequencing on the NextSeq500 platform (Illumina, San Diego, California, USA) paired-end 2×150 bp High Output.
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bioRxiv - Immunology 2021Quote: ... The V(D)J enriched library was then constructed via Chromium Single Cell 5’ Library Construction Kit (10x Genomics Cat#1000020) and libraries were sequenced in a NovaSeq™ 6000 Sequencing System (Illumina, San Diego, CA). V(D)J sequences were collapsed using Cell Ranger ...