Labshake search
Citations for Illumina :
1451 - 1500 of 1661 citations for 2 4 Methyl 5 thiazolyl ethyl decanoate since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2020Quote: ... and submitted for DNA sequencing using the MiSeq Reagent kit v3 with the 2 × 300 bp paired-end sequencing protocol (Illumina Inc., USA).
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bioRxiv - Cancer Biology 2020Quote: ... Sequencing was performed at The Centre for Applied Genomics (Toronto, Canada) across 2 lanes of an Illumina HiSeq2500 rapid run flowcell (Illumina, San Diego) with SR100 bp.
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bioRxiv - Neuroscience 2022Quote: ... The mRNA sequencing (read length of 2×100 bases) was performed using Illumina HiSeq2000 and 2500 machines (Illumina, San Diego, CA, USA) as per the standard Illumina RNA-seq protocol ...
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bioRxiv - Systems Biology 2022Quote: ... The barcoded amplicons were sequenced on the Illumina MiSeq platform using 2 × 250 paired-end (PE) configuration (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2022Quote: ... Paired-end next-generation sequencing was performed on the Illumina MiSeq system 500 (2 x250 bp) (Illumina, San Diego, California, United States). TCR sequencing analysis was performed using RTCR as previously described(46).
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bioRxiv - Cancer Biology 2022Quote: ... Samples were sequenced in depth of 30 to 52 million paired-end 2×150bp reads on Illumina NovaSeq 6000 sequencer (Illumina, CA, USA).
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bioRxiv - Immunology 2021Quote: ... commercial reagents were used for unique dual indexed amplicon library generation according to the Artic protocol (NEBNext® ARTIC SARS-CoV-2 Library Prep Kit (Illumina®)) ...
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bioRxiv - Microbiology 2020Quote: ... The final pool was sequenced on Illumina MiSeq with a 2×250bp PE Illumina Reagent Kit v2 (Illumina, Inc., San Diego, CA) in the Biotechnology Center at the University of Wisconsin-Madison
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bioRxiv - Microbiology 2021Quote: ... according to the manufacturer’s instructions and sequenced using the Illumina MiSeq platform with a read length of 2 × 150 bp (Illumina, San Diego, USA). In total ...
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bioRxiv - Cancer Biology 2021Quote: Strand-specific libraries were generated using the TruSeq Stranded mRNA samples preparation kit (illumine Inc., San Diego, RS-122-2101/2) according to manufacturer’s instructions (Illumina, part #15031047 Rev.E). Briefly ...
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bioRxiv - Microbiology 2020Quote: ... libraries were prepared with Nextera XT DNA Library Preparation Kit69 and paired-end (2×150 bp) sequencing was performed on a NextSeq 500 machine (Illumina Inc., USA) at the George Washington University Genomics Core facility ...
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bioRxiv - Plant Biology 2020Quote: RNA sequencing libraries of time course JA-treated root samples were made using 2 μg of total RNA following TruSeq® Stranded mRNA Library Preparation protocol (Illumina, USA). Equal amount libraries were pooled and sequenced using Illumina Novoseq platform ...
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bioRxiv - Genomics 2020Quote: ... 2 µl each of P7 and P5 Nextera XT Index Kit v2 index primers (Illumina Catalogue numbers FC-131-2001 to 2004) were added to each well ...
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bioRxiv - Cancer Biology 2021Quote: ... and PCR and sequencing were performed as described previously (2 x 250bp paired-end reads, on an Illumina Miseq (Lemont, IL, USA)) [68–70] ...
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bioRxiv - Cancer Biology 2021Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA samples preparation kit (illumine Inc., San Diego, RS-122-2101/2) according to manufacturer’s instructions (Illumina, part #15031047 Rev.E). Briefly ...
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bioRxiv - Microbiology 2021Quote: ... The sequencing data were generated with paired-end sequencing (2 × 300 nucleotides) on the MiSeq platform (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2020Quote: ... Up to 96 AOIs were pooled and sequenced on a NextSeq High Output v2.5 (75 cycles, 2×38 bp; Illumina, cat. no. 20024906).
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bioRxiv - Genomics 2020Quote: ... we ran the library on a 2×100 cycle sequencing run on an Illumina MiSeq v2 (Illumina, Inc., San Diego, CA, USA). The qualified library was sequenced using the Illumina NovaSeq6000 (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... and finally sequenced with phiX as control using paired-end 2×250-bp chemistry on the Illumina MiSeq 2000 platform (Illumina Inc., USA)
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bioRxiv - Cell Biology 2023Quote: The libraries are sequenced in paired-end (2 x 150 cycles) through the SBS (sequencing by synthesis) technology using NovaSeq® 6000 (ILLUMINA®).
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bioRxiv - Genetics 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with partial adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermal cycler with the following program ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was conducted on an Illumina MiSeq using a paired-end 2 x 300 base-pair method (Illumina, San Diego, CA, USA).
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bioRxiv - Systems Biology 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermocycler with the following program ...
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bioRxiv - Genomics 2023Quote: ... 6.3 Gbp of data in 41.8 million reads (2 × 150 cycles) were produced using the MiniSeq System (Illumina, San Diego, Ca, USA). Illumina short reads were quality checked using FastQC v0.11 (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... insert size 550 nt) were constructed from 1.8-2 µg gDNA with the TruSeq DNA PCR-Free kit (Illumina, San Diego, CA) and sequenced on the Illumina HiSeq 2500 by the Genomics Core Facility at Pennsylvania State University ...
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bioRxiv - Microbiology 2024Quote: ... Equal amounts of DNA from each library (except xGen-prepared) were pooled and sequenced using 2×150 bp paired-end settings on an Illumina NextSeq550 platform (Illumina, CA, USA). The xGen-prepared libraries were sequenced separately on an iSeq100 System (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was conducted on an Illumina MiSeq using a paired-end 2 x 300 base-pair method (Illumina, San Diego, CA, USA). We estimated this should provide a mean of 60 000 reads per sample ...
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bioRxiv - Genomics 2023Quote: ... All libraries were pooled and subjected to paired-end 75 bp sequencing (paired- end 76 nt reads with the first 1 nt of Read 1 and the last 1 nt of Read 2 trimmed) using the NextSeq500 system (Illumina, CA, USA). For each library ...
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bioRxiv - Cancer Biology 2023Quote: ... Bacterial 16S rRNA gene V1-V2 region was amplified using 27F and 338R PCR primers and sequenced on a MiSeq (2×250 bp; Illumina, Hayward, CA). Bioinformatic processing and statistical analysis were performed in R software environment as described previously 62 ...
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bioRxiv - Microbiology 2022Quote: ... and variant calling as described by the software manufacturer (https://help.geneious.com/hc/en-us/articles/360045070991-Assembly-of-SARS-CoV-2-genomes-from-tiled-amplicon-Illumina-sequencing-using-Geneious-Prime). For each sample ...
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bioRxiv - Microbiology 2022Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermalcycler with the following program ...
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bioRxiv - Microbiology 2022Quote: ... the constructed DNA libraries were sequenced with a 2 × 150 bp read length using the NextSeq 500 Sequencing System (Illumina, CA, USA).
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bioRxiv - Plant Biology 2023Quote: ... The nuclei pellet was then immediately resuspended in 25 μ L of 2x tagmentation buffer containing 2 μ L of TDE1 (Illumina). The reaction was placed at 37C for 30 minutes with gentle mixing three times ...
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bioRxiv - Microbiology 2023Quote: ... The resulted pool of normalized DNA was cleaned one last time using magnetic beads at a ratio of 0.65:1 and thereafter sequenced at a commercial company (Baseclear, Leiden, The Netherlands) on the Illumina MiSeq platform using 2 × 300 bp paired-end sequencing (Illumina MiSeq PE300). Three negative control samples were included to detect possible contamination during library preparation and sequencing ...
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bioRxiv - Genomics 2023Quote: ... These five tissue-specific samples were subjected to Illumina’s TruSeq Stranded mRNA library preparation kit and sequenced on NovaSeq 6000 (Illumina, 2×150 bp). For long-read RNA sequencing ...
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bioRxiv - Microbiology 2023Quote: ... cDNA was amplified using ARTIC v4 primer pools (https://github.com/artic-network/artic-ncov2019) and variant calling results were generated using the SIGNAL (SARS-CoV-2 Illumina GeNome Assembly Line) pipeline v1.5.0 42 ...
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bioRxiv - Cell Biology 2023Quote: ... and 2×150 bp paired-end sequencing was performed at a depth of approximately 400 million reads (HiSeq; Illumina, San Diego, USA). Cellranger (Version 3.0.2 ...
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bioRxiv - Plant Biology 2024Quote: ... A 2×150 bp paired-end sequencing library was prepared with the NovaSeq 6000 SP Reagent Kit v1.5 (Illumina, San Diego, USA) and sequenced in two lanes of a NovaSeq 6000 instrument (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... which was confirmed using the Qubit dsDNA high-sensitivity assay on a Qubit 3.0 fluorimeter and sequenced as 2 x 250 bp libraries on an Illumina Miseq (Illumina, San Diego, California) at the UConn MARS facility ...
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bioRxiv - Microbiology 2024Quote: ... The prepared DNA libraries underwent paired-end (2 x 150 bp) sequencing using the Illumina NextSeq550 platform (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2024Quote: ... MHC class I genotyping was performed using genomic DNA isolated from PBMCs by sequencing a 150 bp region of exon 2 (Illumina MiSeq system). Sequences were analyzed by comparison to an inhouse database as previously described49 ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing was performed using a 2 × 300 bp paired-end protocol on an Illumina MiSeq platform (Illumina, Inc., San Diego, CA, USA). Negative controls were included for both extraction and PCR protocols.
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bioRxiv - Microbiology 2024Quote: ... 2 µl of the plasmid was used as the template and amplified using Nextera DNA Indexes (Illumina Inc., San Diego, CA, USA) index primers ...
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bioRxiv - Genomics 2024Quote: ... Hybrid capture libraries were sequenced by Illumina short-read sequencing via NextSeq 2000 paired-end (2 x 150 bp) sequencing using standard NextSeq 2000 P3 Reagents (300-Cycles) (Illumina catalog #20040561) and analyzed using a custom hybrid capture bioinformatics pipeline called tbREVEAL developed at Tome Biosciences (described below).
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bioRxiv - Evolutionary Biology 2024Quote: ... and sequencing were performed by the University of Florida’s Interdisciplinary Center for Biotechnology Research’s Gene Expression and Genotyping core facility (ICBR; RRID:SCR_019145) using a 2 x 150 paired-end sequencing format on a NovaSeq6000 (Illumina; San Diego, CA, USA).
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bioRxiv - Developmental Biology 2022Quote: Raw reads were subjected to adapter and quality trimming with cutadapt (version 2.4; parameters: --quality-cutoff 20 --overlap 5 --minimum-length 25; Illumina TruSeq adapter clipped from both reads) followed by trimming of 10 nucleotides from the 5’ and 3’ end of both reads ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Approximately 5 ug of total RNAs were used to construct cDNA libraries (NEBNext Ultra Directional RNA Library Prep Kit for Illumina, Illumina, San Diego, CA, USA). Transcriptome sequencing was performed using the Illumina Hi-Seq 2000 platform ...
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bioRxiv - Neuroscience 2022Quote: Total RNAs from cultured mouse WT and CD38 KO astrocytes at 5 DIV were used for RNA library preparation using TruSeq Stranded mRNA Sample Preparation Kit (Illumina, Inc., San Diego, CA, USA), with polyA selection for ribosomal RNA depletion.
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bioRxiv - Genetics 2020Quote: ... Illumina adapters were incorporated onto the 5’ end of each primer for the attachment of Nextera XT Illumina indices (Illumina, Inc., San Diego, CA, USA) in the second round of PCR ...
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bioRxiv - Genetics 2022Quote: ... of the parental and the F1 fish were based on whole-genome sequencing of the parents (5– 10X coverage; Illumina Hiseq platforms, BGI Hong Kong) and DarTseq (Diversity Arrays Technology ...