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Citations for Illumina :
51 - 100 of 127 citations for Gentamicin Deuterated C Complex Pentaacetate Salt Contains d0 since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2020Quote: ... Hi-C libraries were sequenced on a NextSeq 550 sequencer (2×75 bp, paired-end Illumina NextSeq with the first ten bases acting as barcodes50).
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bioRxiv - Genomics 2020Quote: Hi-C data were obtained in the form of unprocessed fastq files (paired-end Illumina reads) for IMR90 cells from the NCBI Gene Expression Omnibus (GEO)-accession GSE43070[12] ...
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bioRxiv - Genomics 2022Quote: ... and 0.01% Digitonin) and nuclei were collected for tagmentation at 37 °C for 30 minutes (Illumina Tagment DNA Enzyme and Buffer Small Kit) ...
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bioRxiv - Neuroscience 2023Quote: ... Biotinylated cDNA (750 ng) was hybridized at 48°C to MouseRef-8 v2 expression beadchips (Illumina) for 16 h before washing and analyzing according to the manufacturer’s directions ...
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bioRxiv - Developmental Biology 2024Quote: ... and 0.01% Digitonin) and nuclei were collected for tagmentation at 37 °C for 30 minutes (Illumina Tagment DNA Enzyme and Buffer Small Kit) ...
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bioRxiv - Genomics 2024Quote: ... The production-scale sequencing of the Hi-C library was performed on a NextSeq2000 sequencer (Illumina) using 150 bp paired-end read mode at the Berlin Center for Genomics in Biodiversity Research.
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bioRxiv - Cell Biology 2024Quote: ... pooled and sequenced on a HiSeq 4000 (transplants A and B) or MiniSeq (transplant C) (Illumina). Reads were mapped to the original oligo sequences using Hisat2(40) ...
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bioRxiv - Neuroscience 2024Quote: ... and IDT for Illumina RNA UD Indexes Set B and Set C (Illumina, 20040554 and 20040555). Profiling libraries were assessed with LabChip GX Touch HT Nucleic Acid Analyzer (PerkinElmer ...
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bioRxiv - Genomics 2024Quote: ... Tn5 tagmentation reaction was performed at 37°C for 30 minutes using the Nextera kit (Illumina). ATAC-seq libraries were then PCR amplified using NEBNext High-Fidelity PCR master mix (New England Biolabs ...
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bioRxiv - Molecular Biology 2020Quote: ... Nuclei were then pelleted (1,000xg, 10min, 4°C) and transposed in 2.5µl Tn5 (Nextera Tn5 transposase, Illumina), 12.5µl TD reaction buffer and 10.5µl water for 40min at 37°C with rotation ...
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bioRxiv - Genomics 2021Quote: ... and (3) 134 Gb (~100× depth) chromosome conformation capture sequencing (Hi-C) data (sequenced by Illumina platform).
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bioRxiv - Microbiology 2021Quote: ... 72 °C 50 sec followed by the addition of 0.5 µl of dual Nextera XT index (Illumina) to each sample proceeding with an additional 8 cycles 95 °C 30 sec ...
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bioRxiv - Genomics 2022Quote: ... Hi-C libraries were sequenced on a NextSeq 550 apparatus (2 × 75 bp, paired-end Illumina NextSeq). Contact maps were generated from reads using the hicstuff pipeline for processing generic 3C data ...
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bioRxiv - Plant Biology 2021Quote: ... Seventy-five bp single-read sequences were generated using the NextSeq500 (Illumina, Inc., San Diego, C, USA) instrument ...
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bioRxiv - Genomics 2022Quote: ... and DpnII and HindIII Hi-C material was sequenced (2×50 nt) on a HiSeq 4000 (Illumina) following the manufacturer’s instructions) ...
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bioRxiv - Genomics 2022Quote: ... Chromosome-scale scaffolding was then performed by HiRise44 with Hi-C reads obtained from HiSeq 2500 (Illumina).
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bioRxiv - Plant Biology 2024Quote: Hi-C libraries were sequenced at the LAFUGA Gene Center Munich on a NextGen 500 instrument (Illumina) using 2 x 60 bp paired-end reads ...
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were indexed using the IDT for Nextera Unique Dual Indexes Set A,B and C (Illumina). Then ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The amplified cDNA (200 ng) was fragmented for 10 min at 55 °C using Nextera® XT (Illumina) and amplified for 12 cycles with indexed Nextera® PCR primers ...
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bioRxiv - Genomics 2020Quote: ... Sequencing of the Hi-C library was conducted on an Illumina HiSeq 2500 (Illumina, San Diego, CA, USA) with 101 bp paired-end reads ...
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bioRxiv - Cell Biology 2021Quote: ... The amplified cDNA (200 ng) was fragmented for 10 min at 55 °C using Nextera® XT (Illumina) and amplified for 12 cycles with indexed Nextera® PCR primers ...
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bioRxiv - Developmental Biology 2020Quote: ... Nuclei were then resuspended in transposase reaction mix for 30 min at 37 °C (Illumina, Fc-121-1030). The samples were purified using Qiagen MiniElute kit (QIAGEN ...
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bioRxiv - Cancer Biology 2024Quote: ... 2 ng of genomic DNA was incubated at 55°C for 15 minutes with 0.4 ul TDE1 (Illumina) before purification (Qiagen MinElute PCR purification kit) ...
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bioRxiv - Molecular Biology 2022Quote: ... or purified chromosomes (2 x 106 pelleted at 10,000g for 10min at 4°C) were resuspended in 50 μl transposase mixture (25 μl Illumina TD buffer ...
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bioRxiv - Genomics 2021Quote: ... We collected nuclei by centrifuging at 500 g at 4°C and resuspended nuclei in 5 ul TD buffer with 2.5 ul Tn5 enzyme (Illumina Tagment DNA TDE1 Enzyme and Buffer Kits) ...
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bioRxiv - Molecular Biology 2020Quote: ... nuclei were isolated from 50,000 cells and sequencing adapters were transposed for 30 min at 37°C using 2.5 μL of TDE1 (Nextera Tn5 transposase, Illumina). The reaction was terminated and purified using MinElute reaction cleanup (Qiagen ...
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bioRxiv - Genomics 2023Quote: ... about 40 ng purified pre-amplified Hi-C sample was fragmented in two 50 μl tagmentation mix (1x TD buffer and 0.5 μl TDE1 (Illumina Tagment DNA TDE1 Enzyme and Buffer Kit ...
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bioRxiv - Immunology 2023Quote: ... and the nuclei incubated for 2 hours at 37°C with 50μl of TDE1/TD transposase reaction mix (Illumina). Tagmented DNA was then purified using the MinElute kit (Qiagen ...
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bioRxiv - Genomics 2023Quote: ... and sequenced by PacBio Sequel II. Hi-C libraries were prepared following a standard protocol (Belton et al. 2012) and sequenced by Illumina HiSeq 4000 (Illumina ...
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bioRxiv - Immunology 2022Quote: ... 5,000-50.000 cells per experiment were centrifuged 5 minutes at 8°C, and resuspended in 25 µl transposase mixture (12.5 µl Tagmentation DNA buffer, 1 µl Tn5 transposase (Illumina), 10.75 µl nuclease-free water ...
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bioRxiv - Molecular Biology 2020Quote: ... nuclei were isolated from 100,000 cells and sequencing adapters were transposed for 30 minutes at 37°C using 5 μl of TDE1 (Nextera Tn5 transposase, Illumina). After PCR and gel purification ...
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bioRxiv - Genomics 2021Quote: ... Nuclei were then collected by centrifuging at 500 x g for 10 min at 4°C and nuclei were resuspended in 50 μL of transposition reaction mix [25 μL 2X TD buffer (Illumina), 16.5 μL PBS ...
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bioRxiv - Cancer Biology 2021Quote: ... Ribo Zero Gold was then used to deplete ribosomal RNAs (2 reactions were used, and the 50°C step was omitted, Illumina). RNA was then purified using Oligo Clean & Concentration kit ...
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bioRxiv - Genetics 2020Quote: ... equimolar amounts of amplification products from each sample of the 96-well microtiter plate were bulked and applied to c-Bot (Illumina) bridge PCR followed by sequencing on Illumina Hiseq2000 ...
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bioRxiv - Microbiology 2023Quote: ... We stored the DNA at −80° C and an aliquot from each sample was used for sequencing using a MiSeq sequencer (2 × 250 bp, Illumina). A first run was sent to the Integrated Microbiome Resource (Halifax ...
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bioRxiv - Microbiology 2023Quote: ... DNA-Seq libraries were prepared using Nextera XT library preparation kit with 700 pg DNA input per sample and 6:30 min tagmentation at 55 °C and barcoded using Nextera XT indexes (Illumina). RNA-Seq libraries were prepared using KAPA RNA HyperPrep kit (Roche ...
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bioRxiv - Genomics 2023Quote: ... Lysate was centrifuged for 10 min at 500g at 4°C and then resuspended in transposition buffer (25 ul TD buffer and 2.5 ul TD enzyme (Illumina, 20034197), 16.5 ul PBS ...
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bioRxiv - Cancer Biology 2023Quote: ... The size selected fragments were circularization by blunt end ligation for 16 hrs at 30°C using circularization ligase (Illumina). Non-circularized fragments were eliminated by DNA exonuclease treatment ...
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bioRxiv - Genomics 2024Quote: The chromatin conformation capture (Hi-C) fragment libraries were constructed from 300-700 bp insert size and were measured by Illumina platform for auxiliary assembly (Rao et al. ...
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bioRxiv - Immunology 2024Quote: ... After centrifugation at 500ξ g for 5min at 4°C, the cell pellets were resuspended in tagmentation-mix (containing Tagment DNA buffer, Tagment DNA Enzyme (Illumina), Digitonin (Promega ...
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bioRxiv - Genomics 2024Quote: ... before carrying out the Tn5 transposase reaction with Illumina Tagment DNA TDE1 enzyme (37°C, 30 min, 1000 RPM, Illumina) following the standard “OmniATAC protocol” (Corces et al. ...
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bioRxiv - Cell Biology 2023Quote: ... PCR was performed for 40 cycles (15 s at 95°C and 45 s at 60°C) using a Thunderbird SYBR Green Polymerase Kit (TOYOBO) and Eco Real-Time PCR System (Illumina).
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bioRxiv - Immunology 2023Quote: ... it was heat-fragmented at 95°C for 25 min and the ends were repaired with TruSeq Ribo Profile PNK (Illumina). RNA was then cleaned using a modified RNA Clean & Concentrator-5 kit (Zymo Research ...
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bioRxiv - Evolutionary Biology 2022Quote: ... The Hi-C libraries were processed to paired-end sequencing on the Illumina Hiseq 4000 (Illumina, San Diego, CA, USA) platform with read length of 150 bp.
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bioRxiv - Plant Biology 2022Quote: ... The Hi-C libraries were sequenced at the Biotechnology Resource Center at Cornell University (Ithaca, NY, USA) using the NextSeq500 platform (Illumina) to obtain 76 bp paired-end reads.
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bioRxiv - Genomics 2022Quote: ... We centrifuged at 500 x g for 10 minutes at 4°C and resuspended cells in the transposition reaction mix (25 µL 2X TD buffer (Illumina), 2.5 µL TDE1 Tn5 transposase (Illumina) ...
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bioRxiv - Neuroscience 2024Quote: ... were pelleted at 500 g for 10 minutes at 4°C in a fixed angle centrifuge and resuspended in 50 μL transposition buffer (prepared from Illumina kit components TD buffer and 100 nM transposase [Illumina] ...
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bioRxiv - Neuroscience 2024Quote: ... were pelleted at 500 g for 10 minutes at 4°C in a fixed angle centrifuge and resuspended in 50 μL transposition buffer (prepared from Illumina kit components TD buffer and 100 nM transposase (Illumina) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... at a read depth of around 400M reads per sample (Illumina NovaSeq S4 PE150 XP for C. porcellus and Illumina NovaSeq SP Assymetric 10X for M ...
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bioRxiv - Evolutionary Biology 2024Quote: ... at a read depth exceeding 20,000 reads/cell and at the Next Generation Sequencing Facility of the Vienna Biocenter (C. porcellus and M. musculus) at a read depth of around 400M reads per sample (Illumina NovaSeq S4 PE150 XP for C ...