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Citations for Illumina :
51 - 100 of 175 citations for Annexin V Solution APC since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2022Quote: ... Sequencing data were analyzed with the Assign TruSight HLA v.2.1 software (Illumina).
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bioRxiv - Microbiology 2024Quote: ... MinION reads were assembled using IRMA v 0.6.7 (16) and validated by Illumina sequencing as previously described (17) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Genotypes were called using Illumina’s Genome Studio Genotyping Module v 2.0.5 (Illumina, 2016). Filtering criteria included a SNP call frequency > 0.85 ...
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bioRxiv - Immunology 2023Quote: ... cDNA libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina) ...
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bioRxiv - Immunology 2023Quote: ... cDNA Libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... and V(D)J-enriched libraries were sequenced on a NextSeq 550 (Illumina).
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bioRxiv - Genetics 2023Quote: After demultiplexing the barcoded sequences using the CASAVA pipeline v.1.8 (Illumina, Inc.), the GBS data were processed using GBS2popgen.sh (available on GitHub at ...
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bioRxiv - Genomics 2023Quote: ... and preliminary QC were conducted using the Dragen pipeline (v.1.3.0, Illumina Inc). Reads were submitted to the NCBI Short Read Archive (SRA ...
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bioRxiv - Genomics 2023Quote: ... and combined with PhiX control (v.3, Illumina Inc, San Diego, CA, USA) at a final concentration of 1% ...
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bioRxiv - Immunology 2024Quote: ... and quantification of reads were performed using DRAGEN RNA pipeline (v 4.0.4, Illumina). Human genome version 38 (alt-masked v3 ...
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bioRxiv - Molecular Biology 2024Quote: ... Sequencing was performed using the NovaSeq 6000 SP Reagent Kit v 1.0 (Illumina) with 101 bp paired-end reads.
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bioRxiv - Genomics 2024Quote: ... BCL files were converted to FastQ files using bcl2fastq (v.2.19) from Illumina. Read 1 and Read 2 FastQ files were processed using a Snakemake pipeline (20) ...
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bioRxiv - Molecular Biology 2024Quote: Raw data files were imported into the GenomeStudio Genotyping Module (v.2.0, Illumina) using a custom-generated sample sheet ...
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bioRxiv - Genetics 2024Quote: The sequencing reads were demultiplexed with CellRanger (v 4.0.0) mkfastq with bcl2fastq (Illumina) with default parameters ...
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bioRxiv - Genomics 2020Quote: ... SAMtools v.1.9 [59] was used to filter out secondary and duplicate (Illumina only) alignments and calculate sequencing depth for each position ...
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bioRxiv - Immunology 2022Quote: ... and BCR enriched V(D)J libraries were sequenced either on a Nextseq500 (Illumina) using a high output 150 cycle flowcell ...
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bioRxiv - Developmental Biology 2020Quote: ... Amplified cDNA was further processed according to TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced (2×75 bp ...
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bioRxiv - Genetics 2020Quote: ... Copy number variation calling was performed using GenomeStudio v.2011.1 and cnvPartition 3.2.0 (Illumina).
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bioRxiv - Cancer Biology 2022Quote: ... Paired-end sequencing was performed using TruSeq 3000 4000 SBS Kit v.3 (Illumina) on the HiSeq 4000 platform (11 ...
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bioRxiv - Cancer Biology 2024Quote: ... A customized version of the paired-end sample Prep Kit from Illumina (V.1.1) was used for sample preparation1 ...
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bioRxiv - Cancer Biology 2021Quote: ... RNA samples were further processes according to the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the HiSeq 2500 (Illumina).
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bioRxiv - Immunology 2021Quote: ... Both gene expression and V(D)J libraries were sequenced on a Novaseq S4 (Illumina), targeting a median sequencing depth of 50,000 and 5,000 read pairs per cell ...
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bioRxiv - Evolutionary Biology 2022Quote: We used Stacks v.2.41 (Catchen et al. 2011; 2013) to build loci from Illumina reads ...
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bioRxiv - Genetics 2021Quote: ... data was converted from bcl format to FastQ format using bcl2fastq (v 2.19.0, Illumina Inc.) with the following options with-failed-reads ...
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bioRxiv - Cell Biology 2021Quote: ... Sequencing was performed using a High Output v 2.5 (150 cycles) kit (Illumina, cat. 20024907) on a NextSeq 500 ...
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bioRxiv - Microbiology 2020Quote: Paired-end read files were processed and assembled with CLC Genomics Workbench v.9.5.3 (Illumina) using their de novo assembly algorithm with default parameters ...
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bioRxiv - Cancer Biology 2022Quote: Sequencing output data was converted to FASTQ-format using bcl2fastq software (v.2.20, Illumina, USA). FastQC was used for quality controls (24) ...
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bioRxiv - Genomics 2020Quote: ... DNA samples underwent sequencing on an Illumina HiSeq X Ten sequencer (v.2.5 chemistry, Illumina) using 150 bp ...
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bioRxiv - Immunology 2022Quote: ... Both gene expression and V(D)J libraries were sequenced on a Novaseq S4 (Illumina), targeting a median sequencing depth of 50,000 and 5,000 read pairs per cell ...
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bioRxiv - Microbiology 2023Quote: The USEARCH pipeline (v.11) [44] was used to process the data obtained from Illumina sequencing ...
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bioRxiv - Microbiology 2023Quote: ... converted into cDNA and sequenced using an Illumina Hiseq®2500 v.2 (Illumina, Singapore), 150 bp paired- end ...
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bioRxiv - Microbiology 2024Quote: ... or TCR/BCR V(D)J libraries were sequenced on a NovaSeq sequencing platform (Illumina) with a target of 50,000 read pairs per cell.
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bioRxiv - Immunology 2024Quote: ... Both gene expression and V(D)J libraries were sequenced on a NovaSeq 6000 (Illumina), targeting a median sequencing depth of 50,000 and 5,000 read pairs per cell ...
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bioRxiv - Immunology 2024Quote: ... Both gene expression and V(D)J libraries were sequenced on a Novaseq S4 (Illumina), targeting a median sequencing depth of 50,000 and 5,000 read pairs per cell ...
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bioRxiv - Bioengineering 2024Quote: ... Data in resulting fastq.gz files were demultiplexed with bcl-convert v 4.2.4 software from Illumina.
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bioRxiv - Cancer Biology 2024Quote: ... Analysis of DNA methylation was performed using the Infinium Methylation EPIC v.2.0 Kit (Illumina) according to the manufacturer’s protocol and as described in Honkova et al ...
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bioRxiv - Genetics 2024Quote: ... with genotyping performed using the Infinium Global Diversity Array-8 v.10 Kit (Illumina #20031669). RNA extraction utilized the RNeasy kit (Qiagen #74104 ...
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bioRxiv - Microbiology 2020Quote: ... 0.75 M sucrose) and R1804M Ready-Lyse lysozyme solution (Illumina, USA). After 15 minutes of incubation at 37°C ...
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bioRxiv - Cancer Biology 2021Quote: ... indexed adapter ligation and PCR amplification—using the TruSeq RNA v.2 Library Preparation kit (Illumina). The captured library was pooled with other libraries ...
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bioRxiv - Immunology 2021Quote: ... HASHing libraries were sequenced on an Illumina NextSeq 500/550 (NextSeq Control Software v 2.2.0.4 / Real Time Analysis 2.4.11) using a NextSeq 60 cycles kit (Illumina, 20456719) as follows ...
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bioRxiv - Cancer Biology 2021Quote: ... and differential expression was determined using the RNA-Seq Alignment (v.2.0.2) and RNA-Seq Differential Expression (v1.0.1) Basespace applications (Illumina). Gene Set Enrichment Analysis (GSEA ...
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bioRxiv - Plant Biology 2021Quote: ... Sequencing data were demultiplexed with the bcl2fastq Conversion Software (v. 2.20, Illumina; San Diego, California, USA).
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bioRxiv - Immunology 2022Quote: ... All BCR enriched V(D)J libraries were pooled together and sequenced on a NextSeq500 (Illumina) using the same parameters as previously mentioned.
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bioRxiv - Immunology 2020Quote: ... Sequencing data were demultiplexed using the bcl2fastq Conversion Software (v. 2.20, Illumina; San Diego, California, USA). The quality of the resulting reads was assessed with ShortRead (v ...
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bioRxiv - Cancer Biology 2021Quote: ... and sequenced on an Illumina HiSeq 2000 sequencer (RRID:SCR_020132, v.4, Illumina, San Diego, California, USA) in 50 bp single-end mode by Genomics and Proteomics Core facility ...
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bioRxiv - Animal Behavior and Cognition 2020Quote: ... Raw reads were quality checked using FastQC v.0.11.8 (Andrews et al., 2010) followed by Illumina adapter removal using Trimmomatic v.0.38 ...
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bioRxiv - Microbiology 2020Quote: ... The MiSeq Reagent Kit v.3 (2 x 300 bp) (Illumina Inc., San Diego, California USA) was used for sequencing according to manufacturer’s recommendations.
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bioRxiv - Plant Biology 2024Quote: ... cDNA libraries were prepared with Illumina TruSeq RNA Sample Preparation Kit v.2 (Illumina, United States) from the extracted RNA ...
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bioRxiv - Immunology 2024Quote: ... Next-generation sequencing libraries were prepared with the TruSeq RNA Library Prep kit v.2 (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Raw BCL files were converted to FastQ files and de-multiplexed using bcl2fastq v.2.1.9 (Illumina), keeping only >Q30 reads with 150 bp in length ...