Labshake search
Citations for Illumina :
9501 - 9550 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Developmental Biology 2022Quote: ... Libraries were sequenced on an Illumina NovaSeq 6000 (Illumina). For the v2 and v3 libraries 75.000 and 200.000 reads/cell ...
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bioRxiv - Developmental Biology 2022Quote: ... Six barcoded samples were pooled in one lane of the flow cell and sequenced by Illumina NextSeq 750 (MidOutput run) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... the library was sequenced on Illumina Hiseq platform with cBot System via TruSeq PE (Paired-End) Cluster Kit v3-cBot-HS (Illumina, US). For WGBS data analysis ...
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bioRxiv - Evolutionary Biology 2022Quote: ... RNAseq libraries (cat no. E7760, NEBNext UltraII Directional RNA Library Prep Kit for Illumina, USA) from 16 samples were produced according to manufacture protocol using 200 ng total RNA ...
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bioRxiv - Evolutionary Biology 2022Quote: ... DNA libraries were prepared using a Nextera XT kit (Illumina) for paired-end sequencing (2× 300 bp) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... library constructions were performed using TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, US). In brief ...
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bioRxiv - Evolutionary Biology 2022Quote: ... high-output mode (cat no. FC-404-2005, Illumina, USA). Quality control of single–end reads were assessed using Fastqc (v0.11.5) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... DMRs identified using the Infinium HumanMethylation 450 BeadChip array (Illumina) in the blood of 20 WS patients vs 15 healthy controls found DMRs intersecting 551 unique genes [51] ...
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bioRxiv - Evolutionary Biology 2022Quote: ... a method that uses Nextera technology (Illumina Inc., USA) to simultaneously fragment and tag target DNA with sequencing adapters (Russello et al ...
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bioRxiv - Evolutionary Biology 2022Quote: ... and libraries were constructed using Nextera Flex DNA pre-enrichment kit with 12 cycles of PCR amplification (Illumina). We re-sequenced samples from these original libraries to increase their depth if they had a RT-qPCR Ct values less than 20 from an RT-qPCR as measured in a previous paper [14] ...
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bioRxiv - Evolutionary Biology 2022Quote: Genomic DNA was extracted from Bergerac and N2 control lines as previously described (Konrad et al. 2018) with libraries prepared using the Nextera DNAflex library kit (Illumina, San Diego, CA). Libraries were sequenced on the Illumina Novaseq6000 platform (2×150 bp ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Transcriptome sequencing was performed using Illumina Novaseq 6000 platform (Illumina, San Diego, USA). Clean data were obtained by removing the short reads containing adapter sequences ...
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bioRxiv - Evolutionary Biology 2022Quote: ... 150bp paired-end sequencing of each sample was performed on an Illumina NovaSeq 6000 platform (Illumina Inc., San Diego, CA, USA). Library quality was assessed on the Agilent Bioanalyzer 2100 system (Agilent Technologies ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Sequencing was performed on an Illumina HiSeq 3000 (Illumina Inc., San Diego, CA, USA), generating 150 bp paired-end reads.
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bioRxiv - Evolutionary Biology 2022Quote: ... with each pool indexed with a unique dual barcode (NEBNext Multiplex Oligos for Illumina, NEB). The libraries were sequenced with 150-bp paired-end reads on the Illumina HiSeq X instrument at Macrogen Japan ...
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bioRxiv - Immunology 2022Quote: ... 300 bp sequencing was performed using MiSeq (Illumina) with the MiSeq reagent kit v3 (Illumina ...
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bioRxiv - Immunology 2022Quote: ... Consensus sequences were obtained by using the DRAGEN COVID lineage software (Illumina, ver. 3.5.6). Variant calling and annotation were performed using the Nextclade website (https://clades.nextstrain.org).
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bioRxiv - Immunology 2022Quote: ... with the MiSeq reagent kit v3 (Illumina, MS-102-3003). Consensus sequences were obtained by using the DRAGEN COVID lineage software (Illumina ...
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bioRxiv - Immunology 2022Quote: ... Approximately 1ug of total RNA was used as an input material for library preparation using TruSeq RNA Sample Preparation Kit v2 (Illumina). Size of the libraries was confirmed using 2200 TapeStation and High Sensitivity D1K screen tape (Agilent Technologies ...
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bioRxiv - Evolutionary Biology 2022Quote: ... a paired-end library was constructed using Illumina DNA Prep (earlier known as Nextera DNA Flex Library Prep) and sequenced on NovaSeq 6000 (NovaSeq SP 150bp Paired-end Flow Cell, Illumina) at the Biomedical Sequencing Facility (BSF ...
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bioRxiv - Evolutionary Biology 2022Quote: ... We then sequenced the entire pooled library on one lane of a NovaSeq6000 (Illumina, Inc. San Diego, CA) at the Iowa Institute of Human Genetics at the University of Iowa ...
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bioRxiv - Evolutionary Biology 2022Quote: ... The FASTQ reads generated by Illumina whole-genome sequencing were aligned to the C ...
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bioRxiv - Immunology 2022Quote: ... RNA sequencing was performed on a HiSeq 4000 instrument (Illumina).
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bioRxiv - Immunology 2022Quote: ... and ligated with Illumina unique adaptors (Illumina, San Diego, California). Adaptor-ligated DNA was purified using Ampure XP beads ...
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bioRxiv - Immunology 2022Quote: ... Bead purified libraries were normalized and finally sequenced on the NextSeq550 system (Illumina Inc. San Diego, USA) with a read setup of 1×76 bp ...
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bioRxiv - Immunology 2022Quote: Illumina fastq files were downloaded from Illumina Basespace and were aligned with Kallisto program with default settings (Bray et al. ...
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FOXO dictate initiation of B cell development and myeloid restriction in common lymphoid progenitorsbioRxiv - Immunology 2022Quote: ... Libraries were sequenced paired-end (2×50 cycles) on the Illumina platform (Illumina). Reads were mapped using STAR (v 2.5.2b ...
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FOXO dictate initiation of B cell development and myeloid restriction in common lymphoid progenitorsbioRxiv - Immunology 2022Quote: ... Libraries were sequenced paired-end (2×50 cycles) on the Illumina platform (Illumina). To obtain differential ATACseq peaks ...
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bioRxiv - Immunology 2022Quote: Reads from Illumina paired end fastq files were mapped to the mouse genome (mm9 ...
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bioRxiv - Immunology 2022Quote: ... Samples were processed for bulk RNA-sequencing by Q2 solutions using the TruSeq Stranded mRNA kit (Illumina: RS-122-2103) for library preparation ...
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bioRxiv - Immunology 2022Quote: ... and the sequencing libraries were prepared using the Nextera DNA Flex Prep kit (Illumina, USA) as per manufacturer’s instructions ...
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bioRxiv - Immunology 2022Quote: Both PCR reactions were combined and cleaned with 1X ratio Sample Purification Beads (Illumina) at a 1:1 bead to sample ratio ...
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bioRxiv - Immunology 2022Quote: ... Paired-end (2×150 bp) sequencing was performed on a MiniSeq with a 300–cycle reagent kit (Illumina, USA) with a negative control library with no input SARS-CoV-2 RNA extract.
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bioRxiv - Immunology 2022Quote: ... 75-base pair reads were sequenced on a NextSeq 500 machine (Illumina, San Diego, CA)) according to manufacturer protocol ...
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bioRxiv - Immunology 2022Quote: The reads of all probes were adapter trimmed (Illumina TruSeq) and the clean reads were analyzed using FastQC software to identify potential issues with data quality ...
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bioRxiv - Microbiology 2022Quote: ... Raw sequencing reads (FASTQ files trimmed from their Illumina adaptors) were submitted to the NCBI Sequence Read Archive under the BioProject accession number PRJNA751735.
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bioRxiv - Microbiology 2022Quote: ... Total RNAs samples (3 μg) were depleted from ribosomal RNA using the bacteria Ribo-Zero® rRNA Removal kit (Illumina) according to the manufacturer’s protocol ...
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bioRxiv - Microbiology 2022Quote: ... to synthesize the first strand cDNA and the TruSeq®Stranded mRNA Library Prep kit (Illumina) according to the manufacturers’ protocols ...
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bioRxiv - Microbiology 2022Quote: ... Libraries for high throughput DNA sequencing were prepared using the TruSeq®ChIP Sample Preparation kit (Illumina) according to the manufacturer’s protocol starting with 10 ng dsDNA from the previous step ...
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bioRxiv - Immunology 2022Quote: ... Base calling files generated by Illumina sequencer were demultiplexed according to the sample index ...
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bioRxiv - Animal Behavior and Cognition 2022Quote: ... except that we appended TruSeq unique dual indexes (UDIs, Illumina) instead of the adapters provided by the kit to better control for index hopping during sequencing ...
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bioRxiv - Animal Behavior and Cognition 2022Quote: ... Each sample was sequenced twice in separate sequencing lanes on a HiSeq 4000 sequencer (Illumina) at the Genomic Technology Facility of the University of Lausanne ...
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bioRxiv - Bioengineering 2022Quote: ... in rapid mode using a 50 cycles SBS Kit (Illumina, GD-402-4002, FC-402-4022) according to the manufacturer’s instructions ...
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bioRxiv - Bioengineering 2022Quote: ... Scanning of the microarrays was performed on Illumina HiScan (Illumina, SY-103-1001). No signal was observed on human-specific microarrays using similar amounts of RNA/cRNA from connective tissue isolated in the immediate periphery of the implants ...
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bioRxiv - Bioengineering 2022Quote: ... Hybridization of 750ng of cRNA on Human HT-12 v4.0 Expression BeadChip (Illumina, BD-103-0604), were performed according to the manufacturer’s instructions ...
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bioRxiv - Bioengineering 2022Quote: ... 65 cycles of sequencing were performed on an Illumina HiSeq 2500 (Illumina, SY–401–2501) in rapid mode using a 50 cycles SBS Kit (Illumina ...
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bioRxiv - Cancer Biology 2022Quote: All raw base call (BCL) files generated by Illumina sequencers were converted to FASTQ files using cellranger-atac mkfastq function ...
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bioRxiv - Bioengineering 2022Quote: ... and 1 ×107 cells from each gate were barcoded and the sequences for each cell were determined by Illumina next-generation sequencing15 ...
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bioRxiv - Genomics 2022Quote: ... The PCR products were purified with QIAquick Gel Extraction Kit and Qiagen MinElute PCR purification kits and were then sequenced on a Hiseq4000 (Illumina) with 150-bp paired-end sequencing.
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bioRxiv - Genomics 2022Quote: ... RNA-seq libraries were prepared with the TruSeq RNA Library Prep Kit v2 (Illumina). Paired-end sequencing 2x100bp was conducted on an Illumina HiSeq 4000 with a sequencing depth of ∼25 million paired-end reads per sample ...