Labshake search
Citations for Illumina :
5501 - 5550 of 7070 citations for WAS Protein Family Member 3 WASF3 Antibody Biotin since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2020Quote: Mate pair sequencing library was prepared using Illumina-compatible Nextera Mate Pair Sample Preparation Kit (Illumina Inc., Austin, TX, U.S.A.). About 4 μg of genomic DNA was simultaneously fragmented and tagged with mate pair adapters in a transposon based tagmentation step ...
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bioRxiv - Immunology 2021Quote: ... The immunoprecipitated DNA was processed into a standard Illumina ChIP-seq library and sequenced on an Illumina HiSeq instrument (Illumina) generating 48 and 35 million 75-nt single-end (SE75 ...
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bioRxiv - Immunology 2021Quote: ... 150 µl from the 14 pM pool was loaded into each well of an 8-well strip tube and loaded onto a cBot (Illumina) for cluster generation ...
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bioRxiv - Microbiology 2020Quote: DNA extracted from the three cell lines was genotyped on the 220k semi-custom CanineHD array (Illumina, San Diego, CA). Genotype data were managed in PLINK 1.9 (www.cog-genomics.org/plink/1.9/ ...
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bioRxiv - Immunology 2020Quote: ... and duplicate compression was performed using the Cell Ranger software package (10x Genomics, CA, v2.1.0) and bcl2fastq2 (Illumina, CA, v2.20) according to the manufacturer’s recommendations ...
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bioRxiv - Immunology 2020Quote: ... Sample demultiplexing and clonotype alignment was performed using the Cell Ranger software package (10x Genomics, CA, v2.1.0) and bcl2fastq2 (Illumina, CA, v2.20) according to the manufacturer’s recommendations ...
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bioRxiv - Genetics 2019Quote: The accuracy of the variant calls in the filtered dataset was evaluated in two ways: 1) the concordance of genotype calls by Illumina sequencing and by TaqMan allelic discrimination assays (described in Marini et al. ...
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bioRxiv - Neuroscience 2019Quote: ... Half of amplified cDNA was used for qPCR and the other half made into sequencing libraries using Nextera XT DNA library prep kit (Illumina) Quality of cDNA libraries were checked on Bioanalyzer using DNA high sensitivity Chip ...
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bioRxiv - Synthetic Biology 2019Quote: ... and a 10%-20% PhiX was spiked in as a control (PhiX is a genomic DNA sample provided by Illumina).
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bioRxiv - Microbiology 2019Quote: ... An enrichment of messenger RNA was achieved by depleting ribosomal RNA (rRNA) by following the guidelines of the Ribo-Zero rRNA Removal Kit (Illumina)(23 ...
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DNA and RNA-SIP reveal Nitrospira spp. as key drivers of nitrification in groundwater-fed biofiltersbioRxiv - Physiology 2019Quote: ... paired-end 16S rRNA amplicon sequencing was done on the Illumina MiSeq platform with MiSeq Reagent Kit v3 (2 × 301 bp; Illumina). All sequencing was performed at the National High-throughput DNA Sequencing Center (Copenhagen ...
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bioRxiv - Systems Biology 2019Quote: ... was used to fragment and label each genome for paired-end sequencing using a v2 300-cycle MiSeq kit (Illumina). Average read length and coverage can be found in Table S7 ...
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bioRxiv - Cell Biology 2019Quote: A minimum of 1 µg total RNA in 50 µl was used for library preparation using the TruSeq RNA sample preparation kit (Illumina) following the manufacturer’s protocol at Novogene ...
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bioRxiv - Microbiology 2019Quote: ... and was sequenced from paired ends using 500 cycles with the HiSeq 2500 (2 x 250 bp) system (Illumina, USA).
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bioRxiv - Genomics 2019Quote: ... Each library was sequenced using single-end 75 bp reads (120-140 x 106 reads per sample) in a NextSeq500 System (Illumina).
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bioRxiv - Evolutionary Biology 2019Quote: ... In-house sequencing of the Illumina libraries was carried out on Illumina MiSeq platform (Illumina, Inc., San Diego, CA, USA). Adapter trimming was performed automatically by MiSeq control software (MCS) ...
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bioRxiv - Molecular Biology 2019Quote: Poly (A)-containing mRNA from each sample was used to prepare libraries using NEXTflex qRNA-seq Kit for 125 nucleotide single-end sequencing by Illumina HiSeq 2500 ...
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bioRxiv - Plant Biology 2019Quote: ... Approximately 4 ug of total RNA was used to prepare the RNA-seq library using the TruSeq RNA Sample Prep Kits (Illumina) as per the kit protocol ...
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bioRxiv - Evolutionary Biology 2019Quote: RNA sequencing was carried out at Johns Hopkins School of Medicine Genetic Resources Core Facility on a NovaSeq 6000 sequencing system (Illumina) with a S1 flow cell for 200 cycles ...
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bioRxiv - Systems Biology 2019Quote: A mate-pair library with 8-12 kb fragments was prepared from the pure genomic DNA using the Nextera Mate Pair Library Sample Prep Kit (Illumina) and TruSeq DNA Sample Prep Kit (Illumina ...
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bioRxiv - Systems Biology 2020Quote: cDNA was tagmented and amplified using the Nextera XT DNA Library Preparation Kit (FC-131-1096, Illumina, San Diego, CA). The manufacturer’s protocol was followed with the following modified reagent volumes and primers ...
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bioRxiv - Microbiology 2020Quote: ... and duplicate compression was performed using the Cell Ranger software package (10x Genomics, CA, v2.1.0) and bcl2fastq2 (Illumina, CA, v2.20) according to the manufacturer’s recommendations ...
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bioRxiv - Microbiology 2020Quote: ... and duplicate compression was performed using the Cell Ranger software package (10x Genomics, CA, v2.1.0) and bcl2fastq2 (Illumina, CA, v2.20) according to the manufacturer’s recommendations ...
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bioRxiv - Bioengineering 2019Quote: ... indexed adaptors was attached to the fragmented DNA using True-Seq ChIP Sample Preparation kit (Illumina, Cat. # IP-202-1012) according to the manufacturer’s instructions with the following modifications ...
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bioRxiv - Genomics 2019Quote: ... genomic DNA from the glyphosate resistant line was prepared for Illumina sequencing using the Genomic DNA Sample Prep Kit from Illumina following the manufacturer’s protocols and sequenced on one entire lane of a HiSeq 2500 flow cell ...
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bioRxiv - Genomics 2019Quote: ... and the transposition was performed by resuspension of nuclei in 50 µL of Transposition Mix containing 1X TD Buffer (Illumina) and 2.5 µL Tn5 (Illumina ...
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bioRxiv - Genomics 2019Quote: ... The pooled library contained three samples at 6 pM with 9% PhiX and was sequenced with a 50-cycle single-end MiSeq reagent kit (Illumina). The sequencing reads were aligned to the reference genome (NC 000913.3 ...
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bioRxiv - Molecular Biology 2019Quote: ... Bisulfite converted DNA (4 ul) was analyzed in a balanced design using Infinium Human Methylation 450 BeadChip Arrays (Illumina, Inc.) per manufacturer’s protocol ...
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bioRxiv - Immunology 2019Quote: ... depletion of ribosomal RNA was done using the riboZero reagents included in the TruSeq stranded total RNA library prep kit (#20020596, Illumina). NGS libraries were generated following the manufacturer’s protocol ...
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bioRxiv - Genetics 2019Quote: ... Targeted Next-Generation sequencing was performed with 250 ng DNA using the Illumina Tru-seq Custom Amplicon system (Illumina, USA) according to manufacturer’s instructions ...
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bioRxiv - Microbiology 2019Quote: ... The resulting amplicon library pool was diluted to 2 nM with sodium hydroxide and 5 mL were transferred into 995mL HT1 (Illumina) to give a final concentration of 10 pM ...
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bioRxiv - Microbiology 2019Quote: ... MGE-encoding element (plasmid or chromosomal) from this earliest isolate was used as a reference for mapping contigs from Illumina assemblies from all other isolates using BLASTn ...
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bioRxiv - Plant Biology 2019Quote: ... The clustering of the index-coded samples was performed on a cBot Cluster Generation System using the TruSeq PE Cluster Kit v3-cBot-HS (Illumina). The libraries were sequenced using the Illumina Nova 6000 platform.
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bioRxiv - Genomics 2019Quote: ... Each sample library was uniquely barcoded and quantified by PCR using a PhiX Control v3 (Illumina, Cat #FC-110-3001) standard curve ...
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bioRxiv - Genomics 2019Quote: ... At least 6 μg of genomic DNA from each accession was used to construct a sequencing library following the manufacturer’s instructions (Illumina Inc.). Paired-end sequencing libraries with a read size of 100 bp and an insert size of approximately 400 bp were sequenced on an Illumina HiSeq 2000 sequencer at Berry Genomics Company (China) ...
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bioRxiv - Cancer Biology 2019Quote: ... The stranded mRNA-seq library was generated from 1000 ng of total RNA from each sample using Truseq stranded mRNA library kit (Illumina) according to the product instructions ...
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bioRxiv - Cancer Biology 2019Quote: ... The RNA-seq library was prepared using 2 µg of total RNA with a TruSeq sample prep kit v2 (Illumina) according to the manufacture’s protocol and analyzed by single-end sequencing using NextSeq (Illumina).
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bioRxiv - Cancer Biology 2019Quote: ... cDNA was quantified using the High Sensitivity DNA Assay on the Agilent 2100 Bioanalyser and paired end Nextera XT (Illumina) libraries were made and sequenced ...
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bioRxiv - Genomics 2019Quote: The statistical package edgeR (Version 3.7) within the R software suite (Version 3.1) was used to analyse the RNA-seq (Illumina Hi-Seq) data and to identify transcripts significantly differentially expressed between P ...
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bioRxiv - Microbiology 2019Quote: ... the DNA was prepared and loaded into the sequencing cartridge as directed by the MiSeq Reagent Kit v3 with 150 cycles (Illumina), including a 1% PhiX control spike-in prepared according to manufacturer’s instructions (PhiX Control v3 ...
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bioRxiv - Immunology 2019Quote: ... 1ng of cDNA was used to prepare a Nextera XT sequencing library with the Nextera XT DNA library preparation and index kits (Illumina). Samples were pooled and sequenced using the HiSeq2500 (Illumina ...
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bioRxiv - Developmental Biology 2019Quote: ... 200 ng of amplified aRNA was used as input for RNA-Seq library preparation using the TruSeq Stranded mRNA Library Prep Kit (Illumina) and samples were subsequently sequenced as 50 bp single-end on an Illumina HiSeq2500.
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bioRxiv - Molecular Biology 2019Quote: ... 1 µg of input RNA was used for rRNA removal with Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat) (Illumina). Libraries were generated with the NEBNext Ultra Directional RNA Library Prep kit for Illumina (NEB ...
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bioRxiv - Microbiology 2019Quote: ... Paired-end sequencing (2 × 150 bp) was performed on a 300 bp PCR-free insert library on a HISeq 2500 (Illumina) at Novogene (HK ...
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bioRxiv - Microbiology 2019Quote: ... Two micrograms of RNA from each sample was used to prepare libraries for RNA sequencing (RNA-seq) using the TruSeq Stranded Total RNA Library Prep Kit (Illumina) with a PCR enrichment step of 15 cycles ...
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bioRxiv - Microbiology 2019Quote: An input of 100ng of total RNA was prepared and indexed separately for IlluminaTM sequencing using the TruSeq RNA sample Prep Kit (Illumina) as per manufacturer’s instruction ...
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bioRxiv - Genomics 2019Quote: ... The exome resequencing was performed using the NimbleGen exome capture design for barley (Mascher et al., 2017) followed by Illumina 125 bp paired-end resequencing at the University of Kansas Medical Center Genome Sequencing Facility ...
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bioRxiv - Neuroscience 2019Quote: ... Purified and quantified library pool was subsequently sequenced on an Illumina HiSeq 2000 sequencing instrument (Illumina, San Diego, CA, USA) using a multiplex paired end 2×100bp protocol ...
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bioRxiv - Physiology 2020Quote: ... Chip-enriched DNA was purified and 10ng of fragmented input DNA was used for the generation of the library using the TruSeq Chip Sample Prep Kit (Illumina). Briefly ...
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CD8+ T-cell-mediated immunoediting influences genomic evolution and immune evasion in murine gliomasbioRxiv - Cancer Biology 2019Quote: Mutational burden was called by analysis of germline and somatic variation by Strelka2 Small Variant Caller (Illumina; San Diego, CA). The germline identification employed a tiered haplotype model adaptively selected between assembly and alignment-based haplotyping at each variant locus ...