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Citations for PacBio :
1 - 50 of 86 citations for Mouse Whole Genome Microarray since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: Whole genome sequencing was conducted by PacBio Sequel platform ...
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bioRxiv - Genomics 2020Quote: ... The whole-genome sequencing was implemented by PacBio RSII platform using P6/C4 chemistry (Pacific Biosciences ...
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bioRxiv - Genomics 2023Quote: ... we aligned native PacBio HiFi and ONT data from the same source genome to each whole-genome assembly using pbmm2 (v1.1.0) (for PacBio HiFi data ...
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bioRxiv - Genomics 2019Quote: ... four different genome libraries were constructed and sequenced according to the manufacturers’ instructions: (i) Whole genome sequencing (WGS) by PacBio Sequel platform (20-kb library) ...
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bioRxiv - Genomics 2024Quote: ... Long-read whole-genome sequencing was performed on a PacBio Revio instrument (PacBio, Menlo Park, CA, USA), 24 h HiFi sequencing ...
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bioRxiv - Genomics 2020Quote: ... in-house aligned K562 MNase-seq data34 and publicly-released whole-genome shotgun sequencing CCS data from PacBio (https://downloads.pacbcloud.com/public/dataset/HG002_SV_and_SNV_CCS/consensusreads/) ...
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bioRxiv - Molecular Biology 2023Quote: ... SMRTbell library preparation from microbial gDNA and whole genome sequencing using the Pacific Biosciences Sequel II platform (PacBio) were performed by the NCI CCR Sequencing facility ...
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bioRxiv - Microbiology 2024Quote: The index isolate DA14734 was sequenced with long-read whole genome sequencing using the Pacific Biosciences platform (PacBio, Menlo Park, CA). DNA was prepared from overnight cultures using the Qiagen Genomic-Tip 100 ...
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bioRxiv - Genomics 2021Quote: ... 16 complete genomes by PacBio and one reference genome GCA_001549955.1 (sequenced by 454 GS-FLX ...
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bioRxiv - Microbiology 2021Quote: Genomes were assembled from PacBio reads using the software Flye ...
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bioRxiv - Neuroscience 2023Quote: Raw reads were processed and de-multiplexed with Iso-Seq (v3), aligned to the mouse reference genome (mm10, GENCODE) using pbmm246 (v1.10.0, a Minimap2 wrapper adapted for PacBio data ...
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bioRxiv - Evolutionary Biology 2021Quote: ... suecica genome assembly generated by Pacbio RSII can be found under ERR5037702 and those from Sequel under ERR5031296 ...
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bioRxiv - Genomics 2022Quote: We assembled the genome from PacBio sequences only using Canu v1.8 (Koren et al. ...
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bioRxiv - Genetics 2022Quote: ... carinata genome was assembled from PacBio sequencing data using the Hi-C scaffolding method ...
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bioRxiv - Genomics 2022Quote: ... The genome was assembled from PacBio reads using CANU v1.8 [88] ...
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bioRxiv - Genomics 2020Quote: ... and macaque genomes were assembled from PacBio HiFi data (Extended Data Table 2 ...
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bioRxiv - Genomics 2021Quote: ... The draft genome was constructed from PacBio long reads using wtdbg2 v2.5 (Ruan and Li 2020) ...
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bioRxiv - Developmental Biology 2023Quote: The draft genome was constructed from PacBio long reads using Canu v1.8 [52] with parameters optimized for relatively low coverage (correctedErrorRate = 0.105 ...
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bioRxiv - Genomics 2023Quote: ... we first assembled each genome from PacBio HiFi data (Extended Data Table 1 ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and their genomes were sequenced by PacBio HiFi mode according to the instructions from the manufacturer ...
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bioRxiv - Plant Biology 2024Quote: ... The chloroplast genome was assembled from PacBio reads using Organelle_PBA [67,68] ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Three genome assembly strategies were attempted and compared: the IPA HiFi Genome Assembler included in SMRT Link v11 (PacBio), Hifiasm v.0.7 [48] ...
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bioRxiv - Evolutionary Biology 2023Quote: ... To minimize bias due to differing genome sequencing methods we only included genomes that had been generated from PacBio high-fidelity technology ...
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bioRxiv - Evolutionary Biology 2023Quote: ... To minimize bias due to differing genome sequencing methods we only included genomes that had been generated from PacBio high-fidelity technology ...
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bioRxiv - Evolutionary Biology 2020Quote: ... oryzae reference genome (GUY-11 PacBio assembly [59]) using bwa-mem V.0.7.12 [60] with default parameters.
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bioRxiv - Evolutionary Biology 2021Quote: ... Genome sequencing was done with Pacific Biosciences (PacBio) technology ...
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bioRxiv - Genomics 2020Quote: The genome was assembled using Pacific Bioscience (PacBio) Single Molecule Real-Time (SMRT ...
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bioRxiv - Genomics 2024Quote: ... a pipeline for mitochondrial genome assembly from PacBio HiFi reads (or the assembled contigs/scaffolds) ...
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bioRxiv - Genomics 2021Quote: ... Additional benchmarking on three high-quality canid genomes further revealed robustness to both assembly used (breed-specific genome versus CanFam v3.1) and sequencing technology (PacBio vs ONT), although PacBio data appears to over-estimate genome size more than ONT data (Figure S1).
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bioRxiv - Microbiology 2021Quote: ... The genome of strain CS1 was sequenced by PacBio platform (PacBio ...
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bioRxiv - Genomics 2020Quote: A draft reference genome was assembled purely from PacBio reads using the FALCON (version 0.7.3 ...
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bioRxiv - Microbiology 2023Quote: ... For those strains we sequenced the genome by PacBio as described for the MRB collection19 ...
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bioRxiv - Microbiology 2019Quote: ... The genome of strain DBB was further sequenced by PacBio sequencing (PacBio RS ...
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bioRxiv - Genomics 2020Quote: A newly generated draft WTD genome constructed from long (PacBio) and short-read (Illumina ...
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bioRxiv - Genomics 2020Quote: Based on the genome assemblies (including the PacBio reference sequences), bacterial characterization was conducted with our in-house developed Bakcharak pipeline (https://gitlab.com/bfr_bioinformatics/bakcharak ...
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bioRxiv - Evolutionary Biology 2022Quote: A genome assembly was initially generated de novo from PacBio reads from X’X females ...
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bioRxiv - Genomics 2023Quote: ... Raw read data used to build the genome (PacBio, RNAseq), for phylogenomics ...
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bioRxiv - Microbiology 2024Quote: ... The resulting genome was polished three times using Quiver (PacBio) before being error corrected with Illumina reads using Snippy v3.2 (https://github.com/tseemann/snippy) ...
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bioRxiv - Microbiology 2022Quote: Genome-wide methylation motifs on LS1 DNA were identified by PacBio sequencing of genomic DNA harvested from LS1 ΔRM1 (to identify the RM2 methylation motif ...
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bioRxiv - Microbiology 2020Quote: ... The Illumina reads were mapped to PHM037 genome sequenced by PacBio using the Geneious v.10.0.2 software to manually correct PacBio sequencing errors ...
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bioRxiv - Genetics 2023Quote: ... and genomes (and also in P. pacificus, the raw PacBio reads) of each nematode species ...
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bioRxiv - Genomics 2021Quote: ... and 16 genomes from NCBI (10 of which were sequenced by PacBio). Raw reads of Illumina sequencing were assembled using Skesa v2.4.0 [22].
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bioRxiv - Genetics 2022Quote: ... to generate genome sequences of parental lines (and to correct PacBio sequences) we used two rounds of mapping ...
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bioRxiv - Genetics 2019Quote: Genome assemblies of Pgt Ug99 and Pgt21-0 were built from PacBio reads using Canu version 1.638 with default parameters and an estimated dikaryotic genome size of 170 Mbp ...
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bioRxiv - Microbiology 2023Quote: The BHN418 genome assembly was generated by combining long read sequencing (PacBio) and short read sequencing (Illumina ...
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bioRxiv - Microbiology 2020Quote: ... aeruginosa isolates were extracted and sequenced by Illumina HiSeq X platform and genome of Isolate 1(Iso1) was sequenced by PacBio Sequel II platform ...
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bioRxiv - Genomics 2020Quote: ... we generated diploid genome assemblies for 14 individuals from available Pacific Biosciences (PacBio) WGS data and phased SNVs (Table S2).32 Where phased SNVs were not available (samples HG02059 ...
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bioRxiv - Genetics 2020Quote: ... Genes found to be L5-specific (present in completed PacBio and Illumina genomes) were also checked for SNPs in these genes using each of the L5 completed PacBio genomes as a reference ...
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bioRxiv - Microbiology 2022Quote: ... genome polishing was conducted with Arrow v2.3.3 software (PacBio, Menlo Park, CA, USA). A further assembly of the circularizing genome was conducted using Circlator v1.5.5 (Hunt et al. ...
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bioRxiv - Plant Biology 2020Quote: ... we sequenced the genome of a male tree using PacBio Sequel II (PacBio, USA) and assembled the genome following the same pipeline as that for P ...