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Citations for PacBio :
1 - 50 of 128 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2020Quote: ... 10 and 15 (99, 99.9 and 99.95 base call accuracy, respectively. Nanopore and PacBio (raw and CCS reads) were assembled using the following assemblers ...
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bioRxiv - Genomics 2024Quote: ... using settings 28/31 and used to generate PacBio HiFi libraries via the SMRTbell Prep Kit 3.0 (PacBio, 102-182-700). Size selection was performed with Pippin HT using a high-pass cutoff of 17 kbp (Sage Science ...
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bioRxiv - Evolutionary Biology 2024Quote: An initial draft hybrid assembly was constructed from raw Illumina short read data and PacBio longread data using the MaSuRCA pipeline (kmer size = 99, PacBio coverage = 30x). Contigs from this draft assembly were then arranged into scaffolds using the Hi-C and Chicago data using the Dovetail HiRise pipeline ...
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bioRxiv - Evolutionary Biology 2021Quote: ... HGAP4 in SMRT Link v.6 (PacBio) was used to obtain polished long reads in fastq format ...
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bioRxiv - Microbiology 2021Quote: ... or Pacific Biosciences (PacBio, Menlo Park, CA) (B1.3 ...
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bioRxiv - Microbiology 2020Quote: ... and PacBio RSII (PacBio, Menlo Park, CA) platforms by a commercial service provider (Novogene ...
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bioRxiv - Genomics 2021Quote: PacBio subreads were extracted with the SMRT Link (version 6) software tool from PacBio. The extracted subreads were then corrected ...
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bioRxiv - Genetics 2022Quote: ... we perform long-read DNA sequencing (PacBio, CA) throughout the region surrounding the abnormal splicing event ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Each sample underwent AMPure PB bead (PacBio, CA, USA) purification and concentration before undergoing library preparation using the SMRTbell Express Template Prep Kit 2.0 (PacBio ...
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bioRxiv - Cancer Biology 2024Quote: ... using the HiFi protocol (PacBio, Menlo Park, CA, USA). DNA was extracted using the PacBio Nanobind Tissue Kit according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2024Quote: ... The PacBio Nanobind CBB kit (Pacbio, San Diego CA) was used to extract high molecular weight (50–300+ kbp ...
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bioRxiv - Genomics 2022Quote: ... and the PacBio RS II platform (PacBio Inc., CA, USA). Different insert size (bp ...
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bioRxiv - Plant Biology 2020Quote: ... Sequencing was performed on a PacBio Sequel II (PacBio, CA) instrument ...
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bioRxiv - Molecular Biology 2023Quote: ... and sequenced on the PacBio Sequel II (PacBio, CA, USA) at the Functional Genomics Center (FGCZ ...
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bioRxiv - Genomics 2024Quote: For Continuous Long Read (CLR) sequencing technology (PacBio, CA, US), 20 µg of HMW DNA was sheared to an appropriate size range (∼25-100 kb ...
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bioRxiv - Genomics 2024Quote: For Circular Consensus Sequencing (CCS) sequencing technology (PacBio, CA, US), HMW DNA was sheared to an appropriate size range (∼10-30 kb ...
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bioRxiv - Microbiology 2020Quote: ... single molecule real-time (SMRT) sequencing (Pacific Biosciences, PacBio, CA, USA) of the ancestor D39 isolate was performed at the Wellcome Trust Sanger Institute (Cambridge ...
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bioRxiv - Microbiology 2022Quote: ... and purified via AMPure PB beads (PacBio, Menlo Park, CA, USA). The sheared and purified DNA fragments were used as templates to prepare the SMRTbell library through SMRTbell template prep kit 1.0 (PacBio ...
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bioRxiv - Genomics 2023Quote: ... Iso-Seq data were processed using SMRT LINK v11.0 (PacBio, CA) and TAMA 22 ...
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bioRxiv - Genomics 2022Quote: ... using the PacBio Nanobind CBB kit (PacBio, Menlo Park, CA, USA). The blood was drawn during routine veterinary procedures and immediately frozen at -20°C ...
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bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Germany on a Sequel II system (PacBio, Menlo Park, CA, USA).
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bioRxiv - Bioengineering 2023Quote: ... Bead purification was performed using PB Beads (PacBio, Menlo Park, CA). A PacBio sequencing library was constructed following the manufacturer’s protocol using a SMRTbell Express Template Prep kit 2.0 and size selected on a BluePippin instrument (Sage Science ...
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bioRxiv - Biochemistry 2024Quote: Circulomics Short Read Eliminator XS (PacBio, Menlo Park, CA, United States) was used to remove small fragments ...
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bioRxiv - Plant Biology 2020Quote: ... was conducted using AMPure PB Magnetic Beads (PacBio, Menlo Park, CA, USA). We conducted 20-kb single-molecule real-time DNA sequencing using PacBio to sequence a DNA library on the PacBio Sequel platform and 63.90 Gb of raw sequencing reads were obtained ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The sequencing was conducted on a Sequel II platform (PacBio, CA, USA), employing a Sequel II Sequencing Kit 2.0 and a SMRT Cell 8M Tray ...
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bioRxiv - Genomics 2024Quote: ... (0.75% DF Marker S1 high pass 6-10kb v3) and DNA was further purified with PacBio AMPure beads and treated with DNA damage repair mix (PacBio) (37°C for 60 mins ...
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bioRxiv - Genomics 2023Quote: ... The library with 0.5-6 kb cDNA fragments was sequenced with Iso-Seq mode on PacBio Sequel II system (PacBio, USA).
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bioRxiv - Evolutionary Biology 2024Quote: ... About 6 µg of DNA was sheared using a 26G blunt end needle (PacBio protocol PN 101-181-000 Version 05) to ∼40 kb fragments ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Resulting phylogenetic trees led to the manual removal of up to 16 sequences (6 OTUs from PR2 and 10 OTUs from the PacBio dataset) due to their long branches and dubious positions (Table S1) ...
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bioRxiv - Genomics 2020Quote: ... sequencing one cell with CLR version 2 chemistry (PacBio, Menlo Park, CA, USA).
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bioRxiv - Genomics 2021Quote: ... with an average read length of 15.8 kb (PacBio, Menlo Park, CA, USA); (2 ...
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bioRxiv - Genomics 2021Quote: ... and the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA), respectively ...
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bioRxiv - Microbiology 2022Quote: ... A.aerophoba DNA was also prepared for Pacific Biosciences (PacBio, Menlo Park, CA, USA) long-read sequencing and was processed as in (48 ...
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bioRxiv - Microbiology 2022Quote: ... genome polishing was conducted with Arrow v2.3.3 software (PacBio, Menlo Park, CA, USA). A further assembly of the circularizing genome was conducted using Circlator v1.5.5 (Hunt et al. ...
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bioRxiv - Genomics 2023Quote: ... and sequenced on a PacBio Sequel IIe platform (PacBio, Menlo Park, CA, USA). GenomeScope 2.0 [23] and KMC v3.2.1 [24] were employed for genome profiling.
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bioRxiv - Molecular Biology 2024Quote: ... and sequenced using a PacBio Sequel II system (PacBio, Menlo Park, CA, USA). The obtained HiFi reads were assembled using Hifiasms with default parameters ...
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bioRxiv - Immunology 2021Quote: ... with overhanging sequences containing identifiers (sequences of 6 base-pairs) and adapter sequences appropriate for Illumina HiSeq platforms (or PacBio; Pacific Biosciences). Unique identifiers were used for each T-cell population targeting one antigen ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The library was prepared using the SMRTbell express Kit (PacBio, Menlo Park, CA, USA), and sequenced on the Sequel platform with six SMRT cells (PacBio) ...
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bioRxiv - Genomics 2022Quote: Long read data was obtained using Pacific Biosciences technologies (PacBio, Menlo Park, CA, USA). Libraries were prepared using SMRTbell Express Template Prep Kit and Sequel Binding Kit 2.1 was used for polymerase binding ...
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bioRxiv - Genomics 2024Quote: ... Fragmented DNA was then purified using SMRTbell cleanup beads (PacBio, Menlo Park, CA, USA). A sequence library was prepared using the SMRTbell Prep Kit 3.0 (PacBio),and were loaded on the Sequel II sequencing plate 2.0 with on-plate loading concentrations 90 pM ...
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bioRxiv - Genomics 2024Quote: ... SMRTbell libraries were constructed using the SMRTbell Express Template Prep Kit 2.0 (PacBio, CA). Two single-molecule real-time (SMRT ...
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bioRxiv - Microbiology 2022Quote: ... The SMRT sequencing was performed on SMRT 1M Cell v3 (PacBio, Menlo Park, CA, USA) with chemistry version 3.0 on PacBio Sequel sequencer (Genomics BioSci & Tech Co) ...
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bioRxiv - Genomics 2023Quote: Genome assembly was performed using the PacBio SMRT Link software (PacBio, Menlo Park, CA, USA). Briefly ...
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bioRxiv - Genomics 2021Quote: ... ripense was constructed using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) and sequenced on the PacBio Sequel system (PacBio) ...
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bioRxiv - Microbiology 2021Quote: ... SMRTbell template libraries were prepared using a Sequel Binding Kit 3.0 (PacBio, Menlo Park, CA, USA), and sequenced on a Sequel instrument using a v3 or v4 sequencing primer ...
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bioRxiv - Plant Biology 2022Quote: ... Library preparation was performed using SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA), and reads longer than 20 kb were collected using BluePippin (Sage Science ...
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bioRxiv - Genomics 2023Quote: ... Genomic DNA was prepared using the SMRTbell Express Template Prep Kit (PacBio, Menlo Park, CA, USA). Long-read sequence data were obtained using a Sequel IIe system (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... SMRTbell template libraries were prepared using a Sequel Binding Kit 3.0 (PacBio, Menlo Park, CA, USA), and sequenced on a Sequel instrument using a v3 or v4 sequencing primer ...
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bioRxiv - Genomics 2024Quote: ... and Version 2.0 sequencing chemistry with 1×1800 sequencing movie run times (PacBio, Menlo Park, CA).