Labshake search
Citations for PacBio :
1 - 50 of 57 citations for 8 HYDROXY 1 3 DIOXOLO 4 5 G QUINOLINE 7 CARBOXYLIC ACID ETHYL ESTER since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
-
bioRxiv - Genomics 2019Quote: ... including L1Hs insertion sequences and 5’ and 3’ target site duplicate sequences from PacBio data ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
-
bioRxiv - Genomics 2019Quote: ... (Large insertions and deletions are defined to be greater than or equal to 3 nts for Illumina data or greater than or equal to 5 nts for PacBio data ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Genomics 2023Quote: ... All libraries ran on SMRT™ Cells 8 M (PacBio) using the Sequel® II Sequencing Kit 2.0 (PacBio ...
-
bioRxiv - Genomics 2023Quote: ... and sequenced with SMRT Cell 8 M on the Sequel II system (PacBio). The obtained HiFi reads were assembled with Hifiasm (Cheng et al ...
-
bioRxiv - Plant Biology 2020Quote: ... and 3 SMRT cells (v3) respectively (PacBio RSII ...
-
bioRxiv - Genomics 2022Quote: ... and sequenced with SMRT cell 8 M on Sequel II and Sequel IIe systems (PacBio). The obtained HiFi reads were assembled with Hifiasm23.
-
bioRxiv - Microbiology 2022Quote: To generate VSV-G-pseudotyped viruses (for functional selection and long-read PacBio sequencing) from cell-stored deep mutational scanning libraries we plated 60 million library-containing cells per 3-layer flask (Corning Falcon 525cm2 Rectangular Straight Neck Cell Culture Multi-Flask ...
-
bioRxiv - Genomics 2022Quote: ... SMRT sequencing on a Sequel I machine (3 SMRTCells; PacBio) and dedicated library preparation were performed according to provider’s procedure.
-
bioRxiv - Genomics 2020Quote: ... CHM13 PacBio HiFi and ONT data were aligned to the entire chromosome 8 assembly via pbmm2 (v1.1.0) (for PacBio data ...
-
bioRxiv - Microbiology 2021Quote: ... The genomic DNA was sheared to approximately 8-14 kb long fragments and a library was generated with the SMRTbell Express Template Prep Kit 2.0 (PacBio) without size selection ...
-
bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
-
bioRxiv - Genomics 2021Quote: ... and 3) proportion of SVs that were not overlapped by SVs from PacBio assemblies in the same genome (Figure S3D-G) ...
-
bioRxiv - Genomics 2020Quote: ... The polymerase-bound library was sequenced on 8 SMRT Cells with a 10 h movie time using the Sequel Sequencing Kit 3.0 (PacBio, 101-597-900) and a Sequel SMRT Cell 1M v3 (PacBio ...
-
bioRxiv - Cancer Biology 2024Quote: ... MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), and individually created oligos ...
-
bioRxiv - Cancer Biology 2023Quote: ... we require that the call is present in all pairwise comparisons where it should be present with the correct filtering status (e. g., if a given L1 element is present only in the maternal genome in PacBio calls ...
-
bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
-
bioRxiv - Microbiology 2019Quote: ... phenol/chloroform extractions were carried out after RNAse A treatment of precipitated nucleic acids according to recommendations issued by Pacific Bioscience (PacBio SampleNet-shared protocol) for the use of phenol/chloroform/isoamyl alcohol ...
-
bioRxiv - Genomics 2021Quote: ... 10 μg of uHMW DNA was sheared using a 26 G blunt end needle (Pacbio protocol PN 101-181-000 Version 05). A large-insert Pacbio library (CLR ...
-
bioRxiv - Microbiology 2020Quote: The PacBio reads were assembled using HGAP (RS_HGAP_Assembly.3 protocol implemented in PacBio smrtanalysis 2.3.0 software package) and polished using Quiver [24] ...
-
bioRxiv - Microbiology 2020Quote: ... The genome of the strain QMA0248 was sequenced using 3 SMRT cells on the Pacific Biosciences (PacBio) RS II platform and P4C2 sequencing chemistry ...
-
bioRxiv - Cell Biology 2022Quote: A reference fasta file was generated with the 5 picked candidates from PacBio sequencing dataset ...
-
bioRxiv - Genomics 2020Quote: ... The obtained reads were clustered using the Iso-Seq 3 pipeline implemented in SMRT Link ver.8.0 (PacBio) and then mapped onto the assembled genome with Minimap2 (Li et al ...
-
bioRxiv - Plant Biology 2024Quote: ... for 6 passes of centrifugation at 1,990 x g for 2 min and was subsequently purified with SMRTbell® cleanup beads (PacBio Ref. No. 102158-300). 2 μL sheared DNA was taken for fragment size examination through overnight pulse-field gel electrophoresis ...
-
bioRxiv - Genomics 2024Quote: ... The resulting cDNA was used as input for the MAS-Seq for 10x Single Cell 3’ kit by PacBio.
-
bioRxiv - Molecular Biology 2020Quote: ... The mean mapping difference between all of the query reads and the sub UMI was ≤ 3.5 (Nanopore only) or ≤ 3 (PacBio only). D ...
-
bioRxiv - Genomics 2023Quote: ... Illumina data (8,605,412 read pairs from accession WV-PRD-2-4, the same collection used for PacBio sequencing) were trimmed with BBDUK v.38.51 (https://sourceforge.net/projects/bbmap ...
-
bioRxiv - Immunology 2020Quote: ... 5 ug of fragmented DNAs were converted to SMRTbell libraries using the SMRTbell Template Prep Kit 1.0 (PacBio). The libraries were size-selected (7-kb size cutoff ...
-
bioRxiv - Microbiology 2022Quote: ... DNA extraction, library preparation, sequencing (Pacific Biosciences Sequel, 4 samples on one SMRT cell) and assembly (‘Microbial Assembly’ function in PacBio SMRT® Link v8.0 for ACAM34_DSMZ and flye assembly tool v2.6 [65] for ACAM34_UNSW ...
-
bioRxiv - Genomics 2022Quote: ... Windows were excluded if in proximity (within ∼5 kbp) with potentially collapsed or low-confidence assembly regions (considering a PacBio reads coverage value higher than twice the average genome-wide coverage or lower than 10 ...
-
bioRxiv - Neuroscience 2024Quote: Ultra-high molecular weight DNA (UHMW) was extracted from the WIBR3 (parental) hESC line (5 x 106 cells) following the Circulomics/Pacific Biosciences (PacBio) UHMW DNA Nanobind Extraction protocol (Circulomics/PacBio ...
-
bioRxiv - Cancer Biology 2024Quote: The following section of the sequencing preparation was completed using kit components from the MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), as well as individually created oligos ...
-
bioRxiv - Cancer Biology 2024Quote: The following section of the sequencing preparation was completed using kit components from the MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), as well as individually created oligos ...
-
bioRxiv - Evolutionary Biology 2021Quote: ... A 20kb SMRTbell template library was constructed for each pool separately and sequenced individually on the PacBio Sequel system using 3 PacBio SMRT® sequencing cells per library (6 PacBio SMRT® sequencing cells in total)(Macrogen Europe) ...
-
bioRxiv - Genomics 2024Quote: ... Four generations of full-sib matings were carried out to produce the genomic strain SaPa_ori_Rep25-2-1-1 (“Sapa_PacBio”). Fly strains were maintained at room temperature on standard cornmeal food provided by the UC Davis Fly Kitchen with filter paper for environment structure and pupariation substrate.
-
bioRxiv - Genomics 2021Quote: We intersected the uniform 100 bp sized TSS regions from K562 (as described above) with K562 PacBio 5’ read ends (generated from Format-PacBio-Data.sh, see above for more details) using bedtools intersect with the -c flag-which counts the number of overlapping entries-and requiring genomic strands to match.
-
bioRxiv - Immunology 2022Quote: ... 16-nucleotide barcodes were associated with their BA.1 variants by PacBio sequencing ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Each pool was sequenced on 1-2 Sequel II SMRTcells 8M (PacBio) on the Sequel IIe instrument ...
-
bioRxiv - Microbiology 2020Quote: ... aeruginosa isolates were extracted and sequenced by Illumina HiSeq X platform and genome of Isolate 1(Iso1) was sequenced by PacBio Sequel II platform ...
-
bioRxiv - Genetics 2020Quote: ... demultiplexed circular consensus (CCS) reads were generated with the RS_ReadsOfInsert.1 protocol from PacBio’s SMRT portal (v2.3.0 ...