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Citations for PacBio :
1 - 50 of 51 citations for 6 METHYL 3 1H TETRAZOL 5 YL 4H CHROMEN 4 ONE since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
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bioRxiv - Genomics 2019Quote: ... including L1Hs insertion sequences and 5’ and 3’ target site duplicate sequences from PacBio data ...
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bioRxiv - Microbiology 2022Quote: ... DNA extraction, library preparation, sequencing (Pacific Biosciences Sequel, 4 samples on one SMRT cell) and assembly (‘Microbial Assembly’ function in PacBio SMRT® Link v8.0 for ACAM34_DSMZ and flye assembly tool v2.6 [65] for ACAM34_UNSW ...
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bioRxiv - Genomics 2019Quote: ... (Large insertions and deletions are defined to be greater than or equal to 3 nts for Illumina data or greater than or equal to 5 nts for PacBio data ...
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bioRxiv - Evolutionary Biology 2021Quote: ... A 20kb SMRTbell template library was constructed for each pool separately and sequenced individually on the PacBio Sequel system using 3 PacBio SMRT® sequencing cells per library (6 PacBio SMRT® sequencing cells in total)(Macrogen Europe) ...
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bioRxiv - Evolutionary Biology 2021Quote: ... HGAP4 in SMRT Link v.6 (PacBio) was used to obtain polished long reads in fastq format ...
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bioRxiv - Genomics 2020Quote: ... sequencing one cell with CLR version 2 chemistry (PacBio, Menlo Park, CA, USA).
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bioRxiv - Genomics 2019Quote: ... we ultimately polished the genome with long reads using Arrow (one run; PacBio library) and with short reads using Pilon (two runs ...
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bioRxiv - Plant Biology 2020Quote: ... and 3 SMRT cells (v3) respectively (PacBio RSII ...
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bioRxiv - Microbiology 2019Quote: ... Fifteen µg was pulse-field electrophoresis size-selected and sequenced with one Pacific Biosciences (PacBio) RS II SMRT cell.
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bioRxiv - Genomics 2022Quote: ... one PacBio continuous long read (CLR) library using the SMRTbell Express Prep Kit 2.0 (PacBio) and one short read library using the NEBNext Ultra II FS DNA Library Kit for Illumina (New England BioLabs Inc. ...
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bioRxiv - Genomics 2023Quote: ... euphorbiae (from one head each; the same individuals used for the PacBio genome and Hi-C sequencing) and neural tissue from the internal reference standard Acheta domesticus (female ...
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bioRxiv - Genomics 2021Quote: PacBio subreads were extracted with the SMRT Link (version 6) software tool from PacBio. The extracted subreads were then corrected ...
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bioRxiv - Genomics 2023Quote: ... input amounts of 500 ng provide sufficient library yield for approximately one full (non-multiplexed) Pacific Biosciences (PacBio) Sequel II instrument sequencing run ...
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bioRxiv - Genomics 2022Quote: ... SMRT sequencing on a Sequel I machine (3 SMRTCells; PacBio) and dedicated library preparation were performed according to provider’s procedure.
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bioRxiv - Microbiology 2020Quote: ... The sequences belonging to pOXA-48 plasmid were mapped using the complete sequence of one of the plasmid sequenced by PacBio as reference (from K ...
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bioRxiv - Microbiology 2020Quote: ... and sequenced at Washington State University core facility using one cell of the single molecular real time (SMRT) Pacific Biosciences (PacBio) RSII system.
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bioRxiv - Genomics 2023Quote: Three HPG1 accessions (Exposito-Alonso et al. 2018) were sequenced with one SMRT Cell on the Sequel II platform (PacBio). Plant growth (Contreras-Garrido et al ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
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bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
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bioRxiv - Genomics 2020Quote: ... Hybrid assemblies were also generated with combined read data from Sequel II and one other library (ONT RAPID, ONT LIG, PacBio RS II). The Sequel II + ONT LIG assembly was iteratively polished for five rounds using Pilon using Illumina reads ...
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bioRxiv - Genomics 2021Quote: ... and 3) proportion of SVs that were not overlapped by SVs from PacBio assemblies in the same genome (Figure S3D-G) ...
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bioRxiv - Cancer Biology 2024Quote: ... MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), and individually created oligos ...
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bioRxiv - Genomics 2023Quote: ... The library with 0.5-6 kb cDNA fragments was sequenced with Iso-Seq mode on PacBio Sequel II system (PacBio, USA).
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bioRxiv - Genomics 2024Quote: ... (0.75% DF Marker S1 high pass 6-10kb v3) and DNA was further purified with PacBio AMPure beads and treated with DNA damage repair mix (PacBio) (37°C for 60 mins ...
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bioRxiv - Evolutionary Biology 2023Quote: ... About 6 pg of DNA was sheared using a 26G blunt end needle (PacBio protocol PN 101-181-000 Version 05) to ∼40 kb fragments ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Genomics 2023Quote: ... SVs were accepted into the final callset if they had support from two orthogonal sources with at least one being another caller (i.e., support from only subseq PacBio HiFi and subseq ONT was not allowed). Indels and SNVs were accepted with support from one orthogonal caller ...
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bioRxiv - Immunology 2021Quote: ... with overhanging sequences containing identifiers (sequences of 6 base-pairs) and adapter sequences appropriate for Illumina HiSeq platforms (or PacBio; Pacific Biosciences). Unique identifiers were used for each T-cell population targeting one antigen ...
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bioRxiv - Microbiology 2020Quote: The PacBio reads were assembled using HGAP (RS_HGAP_Assembly.3 protocol implemented in PacBio smrtanalysis 2.3.0 software package) and polished using Quiver [24] ...
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bioRxiv - Microbiology 2020Quote: ... The genome of the strain QMA0248 was sequenced using 3 SMRT cells on the Pacific Biosciences (PacBio) RS II platform and P4C2 sequencing chemistry ...
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bioRxiv - Cell Biology 2022Quote: A reference fasta file was generated with the 5 picked candidates from PacBio sequencing dataset ...
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bioRxiv - Genomics 2020Quote: ... The obtained reads were clustered using the Iso-Seq 3 pipeline implemented in SMRT Link ver.8.0 (PacBio) and then mapped onto the assembled genome with Minimap2 (Li et al ...
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bioRxiv - Genomics 2024Quote: ... The resulting cDNA was used as input for the MAS-Seq for 10x Single Cell 3’ kit by PacBio.
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bioRxiv - Molecular Biology 2020Quote: ... The mean mapping difference between all of the query reads and the sub UMI was ≤ 3.5 (Nanopore only) or ≤ 3 (PacBio only). D ...
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bioRxiv - Genomics 2023Quote: ... Illumina data (8,605,412 read pairs from accession WV-PRD-2-4, the same collection used for PacBio sequencing) were trimmed with BBDUK v.38.51 (https://sourceforge.net/projects/bbmap ...
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bioRxiv - Immunology 2020Quote: ... 5 ug of fragmented DNAs were converted to SMRTbell libraries using the SMRTbell Template Prep Kit 1.0 (PacBio). The libraries were size-selected (7-kb size cutoff ...
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bioRxiv - Genomics 2022Quote: ... Windows were excluded if in proximity (within ∼5 kbp) with potentially collapsed or low-confidence assembly regions (considering a PacBio reads coverage value higher than twice the average genome-wide coverage or lower than 10 ...
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bioRxiv - Neuroscience 2024Quote: Ultra-high molecular weight DNA (UHMW) was extracted from the WIBR3 (parental) hESC line (5 x 106 cells) following the Circulomics/Pacific Biosciences (PacBio) UHMW DNA Nanobind Extraction protocol (Circulomics/PacBio ...
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bioRxiv - Cancer Biology 2024Quote: The following section of the sequencing preparation was completed using kit components from the MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), as well as individually created oligos ...
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bioRxiv - Cancer Biology 2024Quote: The following section of the sequencing preparation was completed using kit components from the MAS-Seq for 10x Single Cell 3’ kit (PacBio, cat. no. 102-659-600), as well as individually created oligos ...