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Citations for Phase Genomics :
1 - 50 of 109 citations for Ammonium Polyphosphate phase II 02 since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... PacBio Sequel II HiFi and Hi-C (Phase Genomics) data were assembled with Hifiasm v.0.16.1 (Cheng et al. ...
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bioRxiv - Genomics 2020Quote: ... Phase-HiC libraries were made by Phase Genomics using a Proximo Hi-C Library single enzyme reaction.
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bioRxiv - Genetics 2020Quote: ... Phase Genomics™ Hi-C libraries were made by Phase genomics from males (n=2 ...
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bioRxiv - Microbiology 2023Quote: ... processed by Phase Genomics in Seattle ...
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bioRxiv - Genomics 2021Quote: ... 0.5g tissue sample was sent to Phase Genomics (Phase Genomics Inc. Seattle, WA, USA).
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bioRxiv - Microbiology 2024Quote: ... as suggested by Phase Genomics’ protocols ...
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bioRxiv - Genomics 2023Quote: ... maclovinus specimen by Phase Genomics Inc ...
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bioRxiv - Genomics 2024Quote: ... borchgrevinki individual by Phase Genomics, Inc ...
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bioRxiv - Genomics 2020Quote: ... We then followed the Phase Genomics Proximo HiC animal kit (Phase Genomics, Inc., Seattle, WA, USA) protocol ...
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bioRxiv - Cancer Biology 2024Quote: ... Hi-C was performed using Phase Genomics Proximo Hi-C kits v4.0 (Phase genomics, Seattle, WA) according to the manufacturer’s instructions21 ...
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bioRxiv - Genomics 2023Quote: ... hyperodae were scaffolded by Phase Genomics using Hi-C data generated from pools of 10 individuals ...
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bioRxiv - Genomics 2024Quote: ... 2) human oral microbiome (Phase Genomics); 3 ...
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bioRxiv - Genomics 2024Quote: ... and 4) vermiculture microbiome (Phase Genomics).
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bioRxiv - Genomics 2020Quote: Hi-C was performed following the Phase Genomics Proximo Hi-C animal Kit (Phase Genomics, Seattle, WA). About 40-50 female third instar larvae were sliced with a razor blade to obtain about 80 mg of tissue ...
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bioRxiv - Genetics 2020Quote: ... Initial scaffolding was completed by Phase Genomics, but edited using the Salsa56 and 3D-DNA (https://github.com/theaidenlab/3d-dna ...
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bioRxiv - Genomics 2023Quote: ... Library constructions were performed by Phase Genomics, Inc ...
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bioRxiv - Genomics 2023Quote: ... The libraries were sequenced by Phase Genomics on an Illumina NovaSeq6000 ...
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bioRxiv - Genetics 2022Quote: ... tenebrosa assembly by Phase Genomics (Seattle, WA) using the Proximo platform ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and annotated by Phase Genomics (Seattle, WA). Leaf tissue was harvested from a P ...
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bioRxiv - Evolutionary Biology 2022Quote: ... employing the Phase Genomics HiC functions (Kronenberg and Sullivan, 2018, phasegenomics.github.io, https://github.com/phasegenomics/juicebox_scripts) (Phase Genomics, Seattle, Washington, USA) and Juicebox assembly tools (Dudchenko et al ...
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bioRxiv - Genomics 2020Quote: ... and Hi-C Library reads SRR10011257 (Phase Genomics) and SRR12507442 & SRR12507443 (Dovetail Genomics) ...
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bioRxiv - Genomics 2022Quote: ... Hi-C binning was provided by Phase Genomics using its internal pipeline with MetaBAT results for hybrid assemblies as a starting point ...
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bioRxiv - Plant Biology 2022Quote: ... The quality control script provided by Phase Genomics was used to assess the HiC data quality.
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bioRxiv - Genomics 2024Quote: ... for QC using hic_qc v1.0 (Phase Genomics 2019). This was followed by sequencing on the Illumina NextSeq 500 using a High Output 300 cycle kit ...
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bioRxiv - Genomics 2024Quote: ... A Phase Genomics Proximo Hi-C library was prepared from Chia pinta leaf tissue and sequenced by Phase Genomics (Seattle, WA) on the NextSeq 500 generating paired end 150 nt reads.
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bioRxiv - Genomics 2020Quote: The polished draft assembly was scaffolded by Phase Genomics using their proprietary scaffolding software (Burton et al ...
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bioRxiv - Genomics 2023Quote: ... A Hi-C Plant Kit (Phase Genomics, Seattle, WA) was used to create a proximity ligation library that included four restriction enzymes (DpnII ...
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bioRxiv - Synthetic Biology 2024Quote: ... HiC reads QC analysis was performed by Phase Genomics. Each culture was sent in duplicate ...
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bioRxiv - Genomics 2023Quote: ... Library preparation was performed by Phase Genomics (https://phasegenomics.com/) using their standard protocol ...
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bioRxiv - Genomics 2024Quote: ... and Matlock and Juicebox utilities (Phase Genomics, see github.com) were used to convert the alignment file to a Hi-C contact map ...
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bioRxiv - Evolutionary Biology 2023Quote: ... We then used the resulting .bam file as the input file to the Phase Genomics Matlock suite of HiC functions (Kronenberg and Sullivan, 2018 https://github.com/phasegenomics/matlock) (Phase Genomics, Seattle, Washington, USA), which converted mapped reads into a HiC format that could be converted to a .hic and .assembly file using the 3d-dna script ‘run-assembly-visualizer.sh’ and visualized using the software Juicebox v1.11.08 (Durand et al ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The blood of the same individual was used to prepare a Hi-C sequencing library using the Phase Genomics Proximo Hi-C animal kit (Phase Genomics, Seattle, WA). One SMRT cell was sequenced on a PacBio Sequel IIe ...
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bioRxiv - Genomics 2021Quote: ... DNA leaf material was collected from the same individuals and extracted with the Phase Genomics Proximo Hi-C Plant kit (Phase Genomics, Seattle, WA, USA). Sequencing consisted of two lanes of mid output Illumina NextSeq 500 75PE with an average of 150 M reads per species (Center for Genome Innovation (CGI ...
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bioRxiv - Genomics 2020Quote: ... Xenograft tissue samples were processed by Phase Genomics (Seattle, WA) and Arima Genomics (San Diego ...
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bioRxiv - Genomics 2022Quote: ... a Proximo Hi-C 2.0 Kit (Phase Genomics, WA, USA) was used to prepare the proximity ligation library and process it into an Illumina-compatible sequencing library ...
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bioRxiv - Genomics 2021Quote: The Proximo Hi-C genome scaffolding platform from Phase Genomics’(Seattle ...
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bioRxiv - Bioengineering 2022Quote: ... Samples were submitted to and sequenced by Phase Genomics (USA). Both the shotgun library and the Hi-C library were sequenced on the same platform ...
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bioRxiv - Genomics 2022Quote: ... The chromosome-scale genome assembly was generated by Phase Genomics using the de novo assembly ...
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bioRxiv - Genomics 2024Quote: ... Hi-C libraries were constructed from plant tissue using the Phase Genomics Proximo™ Hi-C kit Plant Protocol Kit Version 1 (Phase Genomics, Seattle, Washington, USA) and the gDNA sample was double size selected (0.6/0.2X ...
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bioRxiv - Genetics 2022Quote: ... library preparation and sequencing were performed by Phase Genomics (Seattle, WA).
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bioRxiv - Genomics 2023Quote: ... Chromosome-scale scaffolding was performed by Phase Genomics (Seattle, Washington, USA) with Proximo Hi-C (supplements 1.2) ...
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bioRxiv - Genomics 2024Quote: ... Contigs were scaffolded into pseudomolecules by Phase Genomics (Seattle, WA, USA) using the Proximo Genome Scaffolding Platform ...
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bioRxiv - Genomics 2024Quote: ... Proximo-HiC library preparation and sequencing were performed by Phase Genomics.
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bioRxiv - Genetics 2024Quote: The raw fastq sequences were downloaded from Phase Genomics (Seattle, Washington, USA) and checked ...
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bioRxiv - Plant Biology 2022Quote: ... tabacum using the animal Proximo Hi-C kit (Phase Genomics, https://phasegenomics.com/) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2022Quote: ... the “Proximo” service (https://phasegenomics.com/products/proximo/) from Phase Genomics (Seattle, WA) was utilized to generate Hi-C sequencing reads ...
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bioRxiv - Genomics 2022Quote: ... The HiC library preparation was performed by Phase Genomics (Seattle, WA, USA) proximo HiC animal protocol with some modification in tissue processing ...
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bioRxiv - Genomics 2020Quote: ... PacBio data used for genome assembly and Hi-C data from Phase Genomics used for construction of proximity map (PRJNA498060) ...
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bioRxiv - Genomics 2020Quote: ... according to the manufacturer’s protocol but using150 μL Bead Binding buffer (Phase Genomics) for coupling the biotinylated molecules to the beads and continue with the Phase Genomics Hi-C kit for plants protocol ...
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bioRxiv - Genomics 2022Quote: ... library preparation and Hi-C sequencing was performed by Phase Genomics (WA, USA). Following the manufacturer’s instructions ...