Labshake search
Citations for Oxford Instruments :
1 - 50 of 114 citations for 4F2 Cell Surface Antigen Light Chain SLC7A5 Antibody since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Cell Biology 2021Quote: ... we used the surface tool of the Imaris Cell Imaging software (Oxford Instruments).
-
bioRxiv - Developmental Biology 2023Quote: Images were quantified (“surface”, “cell”, “spots” modules) in Imaris microscopic image analysis software (version 10.0, Oxford Instruments). Procedures applied to quantifying the removal of membrane α-catenin ...
-
bioRxiv - Cell Biology 2021Quote: ... MitoTracker and GFP channels were then used to reconstruct 3D surfaces using IMARIS Cell Biology software (Oxford Instruments). Once both cytosolic (GFP ...
-
bioRxiv - Cell Biology 2023Quote: ... and their surfaces were visualized in Imaris software (Oxford Instruments).
-
bioRxiv - Neuroscience 2019Quote: ... and S100B positive surfaces were created using Imaris (v9.3.1, Oxford Instruments).
-
bioRxiv - Microbiology 2022Quote: ... The surface rendering function of Imaris image processing software (Oxford Instruments) was used ...
-
bioRxiv - Cell Biology 2023Quote: ... Segmentation data were imported as surfaces into Imaris 10.0.0 (Oxford Instruments) and juxtaposition analysis was performed by measuring the distance between surfaces (surfaces within 30 nm of each other were considered juxtaposed).
-
bioRxiv - Immunology 2022Quote: ... Bone surface expressing TRAP was quantified using Imaris Software (Oxford Instruments, UK).
-
bioRxiv - Neuroscience 2023Quote: ... the surface rendering function of Imaris (v 9.9, Oxford Instruments, Abingdon, UK) was used.
-
bioRxiv - Plant Biology 2023Quote: ... 3D surface projections were rendered using the Imaris software (Bitplane, Oxford Instruments).
-
bioRxiv - Bioengineering 2023Quote: ... MVN surfaces were constructed from dextran images using Imaris software (Oxford Instruments) and clipped along the xz plane to reveal vessel openings.
-
bioRxiv - Neuroscience 2024Quote: ... we used the inbuilt surface detection algorithm from Imaris 9.6 (Oxford Instruments). The surface detail was set to 0.16 µm and largest sphere diameters for background subtraction were set as follows ...
-
bioRxiv - Neuroscience 2023Quote: ... Reconstruction of the microglial surface was performed using IMARIS (Version 9.6, Oxford Instruments) at the following settings ...
-
bioRxiv - Neuroscience 2022Quote: ... The total volume of each surface rendering was quantified with Imaris 9.8 (Oxford Instruments).
-
bioRxiv - Microbiology 2022Quote: ... 3D volumetric surface constructs were obtained using Imaris software (version 9.5.1; Oxford instruments, Belfast), by applying an intensity threshold for each channel ...
-
bioRxiv - Cancer Biology 2022Quote: ... The light was collected by an iDus 1.7 μm InGaAs (Andor, Oxford Instruments) with an exposure time of 0.1–5 seconds ...
-
bioRxiv - Cell Biology 2023Quote: ... Surface rendering of LMO7 images was performed using Imaris version 9.9.0 (Oxford Instruments, Abingdon, UK), following software-guided creation parameters ...
-
bioRxiv - Neuroscience 2023Quote: Immunohistochemical puncta were quantified from three-dimensional surface projections in Imaris x64 (v9.9.1; Oxford Instruments) from confocal z-stacks captured with identical settings ...
-
bioRxiv - Developmental Biology 2020Quote: ... with voxel quantification of the surface and volume areas performed in iMaris 9.3 (Bitplane – Oxford Instruments).
-
bioRxiv - Molecular Biology 2024Quote: ... 3D reconstruction and surface area measurements for droplets were conducted using Imaris v9 software (Oxford Instruments) with its spot identification function ...
-
bioRxiv - Neuroscience 2023Quote: ... Spine volume was analyzed using the surface detection tool of the Imaris 9.5 software package (Oxford Instruments).
-
bioRxiv - Physiology 2023Quote: Manual plaque volume was determined using the manual drawing tools under the surface creation option in Imaris (v9.9.1 or 10.0.0) (Bitplane, Oxford Instruments). Plaque and neointimal hyperplasia were delimited by cd31 staining in the lumen and diffuse autofluorescence around the border of the inner elastic lamina ...
-
bioRxiv - Developmental Biology 2021Quote: ... Neurons and axonal projections were manually segmented using the Surface tool of the Imaris software (IMARIS 9.7.2, Bitplane, Oxford Instruments).
-
bioRxiv - Molecular Biology 2023Quote: The IFITM3 signal of the deconvolved image stacks was segmented in 3 dimensions using the surface segmentation algorithm of Imaris (Verison 9.8.2, Oxford Instruments). The number of segmented objects per cell and the volume distribution of all objects were quantified.
-
bioRxiv - Neuroscience 2024Quote: ... Quantification of bAP-GluA2 intensity over the surface of dendritic segments and spines and spine volumes were analysed on 3D images using the Filaments and Surfaces modules in Imaris 10.0.1 (Oxford Instruments), respectively ...
-
bioRxiv - Neuroscience 2022Quote: Myelinated nerve and axon volume were quantified by creating a surface rendering of the imaged nerve using Imaris 9.8 (Oxford Instruments). The total volume of each surface rendering was quantified with Imaris 9.8 (Oxford Instruments).
-
bioRxiv - Cell Biology 2022Quote: ... the volume of both PGCs was measured by defining the PGC surfaces using the image analysis platform Imaris(Oxford Instruments); the volume contained within them was measured and divided by two to determine the volume per single PGC ...
-
bioRxiv - Neuroscience 2023Quote: ... three-dimensional (3D) reconstruction and surface rendering of striatal and neocortical interneurons were performed using Imarisx64 9.9 software (Oxford Instruments) based on GFP+ signal ...
-
bioRxiv - Cancer Biology 2024Quote: ... Spheroids were imaged on a Zeiss Light-Sheet microscope and analyzed using using Imaris v9.6 software (www.imaris.oxinst.com; Oxford Instruments, UK). See Supplementary Section 1 for full experimental details.
-
bioRxiv - Synthetic Biology 2021Quote: ... The root-mean-square (r.m.s.) surface roughness of the biofilm over 2 μm × 2 μm areas was analyzed using built-in Cypher software (Oxford Instruments); these measurements were from the AFM height images of at least three biological replicates.
-
bioRxiv - Microbiology 2019Quote: The mean area and number of VFs were calculated using the surface tool in Imaris 9 software (Bitplane, Oxford Instruments, UK), and an overlap coefficient ...
-
bioRxiv - Neuroscience 2020Quote: ... cellular regions of interest (ROIs) were automatically created based on the tdTomato signal with the Surfaces module in Imaris software (Oxford Instruments). The mean p-S6 fluorescence intensity per ROI and average soma volume were calculated using Imaris ...
-
bioRxiv - Biochemistry 2019Quote: ... first we manually determined a fluorescence intensity threshold for detected objects and designated all voxels of an image above this threshold to be part of Surface objects by using Imaris software (Oxford instruments). Next ...
-
bioRxiv - Bioengineering 2019Quote: ... Orientation of the microfluidics-aligned collagen bundles was characterized using the ImageJ plugin “OrientationJ”.33 The visualization and surface analysis software Imaris 9 (Oxford Instruments) was used to reconstruct confocal image stacks from which cell migration in 3D was automatically tracked and tumor volume was automatically computed ...
-
bioRxiv - Microbiology 2023Quote: 3D nucleoids were segmented by automatic thresholding of the Syto9 or mCherry fluorescence signal using the ‘surface’ procedure of the Imaris software (Oxford instruments) after parameter optimization (surface smoothing detail = 0.1 µm and background subtraction = 0.2 µm) ...
-
bioRxiv - Neuroscience 2021Quote: ... The length and number of branch points of SMA-immunolabeled brain vessels were quantified using the “Surface” and “Filament” tools in Imaris software (Oxford instruments, Oxford). Three brains were analyzed per developmental stage.
-
bioRxiv - Neuroscience 2021Quote: ... The length and number of branch points of Pecam-1- or SMA-immunolabeled brain vessels were quantified using the “Surface” and “Filament” tools in Imaris software (Oxford instruments, Oxford). Anastomoses were measured by eye.
-
bioRxiv - Neuroscience 2022Quote: ... and their maximum projections (ImageJ Fiji, National Institute of Health USA; https://imagej.nih.gov/ij/) or 3D surface rendering reconstructions (Imaris, Oxford instruments 2022: https://imaris.oxinst.com/) were used to represent graphically the structures of interests and their morphologies ...
-
bioRxiv - Pharmacology and Toxicology 2022Quote: ... Emitted light was passed through the CSU-10 and collected by an Andor iXON897 EM-CCD camera (Oxford Instruments, UK) recorded at a minimum acquisition frame rate of 60 frames per second using μManager software (v2.0 ...
-
bioRxiv - Cell Biology 2021Quote: ... and SiC (250 nm) are deposited on the cleaned surface via Plasma-Enhanced Chemical Vapour Deposition (PE-CVD) at 300°C (Oxford Instruments PlasmaPro 80). PE-CVD ensures a surface smooth enough for TIRF microscopy with fast deposition rates (70 nm/min for SiO2 and 40 nm/min for SiC).
-
bioRxiv - Cell Biology 2021Quote: ... Quantitative assessment of platelet adhesion and thrombus formation was performed to obtain the percentage area covered by thrombi over time by computational image analysis using the surfaces creation wizard algorithm in Bitplane Imaris version 7.65 (Oxford Instruments, Abingdon, United Kingdom). Experiments were performed according to International Society on Thrombosis and Haemostasis Scientific and Standardization Committee (ISTH SSC ...
-
bioRxiv - Cancer Biology 2022Quote: ... The light was f/# matched to the spectrometer using several lenses and injected into a Shamrock 303i spectrograph (Andor, Oxford Instruments) with a slit width of 100 μm ...
-
bioRxiv - Cell Biology 2022Quote: Photobleaching and laser ablations were performed using 514 or 551 nm ns-pulsed laser light and a galvo-controlled MicroPoint Laser System (Andor, Oxford Instruments) operated through MetaMorph or Micro-Manager ...
-
bioRxiv - Cell Biology 2023Quote: Laser ablation experiments were done using 514 nm ns-pulsed laser light and a galvo-controlled MicroPoint Laser System (Andor, Oxford Instruments) operated through Micro-Manager ...
-
bioRxiv - Immunology 2021Quote: ... 3D cell reconstruction was performed using Imaris Cell Imaging Software (Oxford Instruments).
-
bioRxiv - Physiology 2023Quote: ... Individual cell volumes of stressed and non-stressed cells of all the variants were measured using Imaris Cell Imaging Software (Oxford Instruments). Images from three independent experiments were analyzed and volumes of at least 20 cells per construct and condition were measured for a total of 213 cells ...
-
bioRxiv - Developmental Biology 2023Quote: Cell counting (Parameter option: cell size = 8) and gastruloid volume calculations were performed using the IMARIS software (Oxford Instruments), with gastruloid volumes calculated by creating a surface (surface smoothing 1.5 ...
-
bioRxiv - Developmental Biology 2023Quote: ... we imported the time lapse videos of chimeric primordium with host cells labeled with H2A-mCherry and donor cells labelled with H2A-GFP into Imaris Version 10.0 (Bitplane, Oxford Instruments). The spot tool in the Imaris software was used as described previously (Colak-Champollion et al. ...
-
bioRxiv - Neuroscience 2022Quote: Cell numbers were estimated by Imaris (Oxford Instruments) on anatomical stack images ...
-
bioRxiv - Cell Biology 2020Quote: Imaris Cell Imaging Software 9.2.1 (Oxford Instruments Group), was used to analyze images ...