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Citations for Illumina :
1 - 50 of 627 citations for Tumor necrosis factor receptor superfamily member 3 TNFRSF3 Human HEK293 His since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: We downloaded publicly-available Hi-C data from human prefrontal cortex tissue23,24 (Illumina HiSeq 2000 paired-end raw sequence reads ...
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bioRxiv - Genomics 2019Quote: ... (2) receptors obtained from Illumina sequencing of the transcriptome of the main olfactory epithelium ...
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bioRxiv - Pathology 2022Quote: ... TruSight Tumor 15 (Illumina, USA), and in-house pyrosequencing [43] ...
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bioRxiv - Genomics 2021Quote: ... and (3) 134 Gb (~100× depth) chromosome conformation capture sequencing (Hi-C) data (sequenced by Illumina platform).
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bioRxiv - Genetics 2023Quote: ... The IBD between long-lived family members was calculated using the --ibd module from Merlin using previously generated genome-wide genetic data from Illumina BeadChips 72.
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bioRxiv - Genetics 2020Quote: ... A genome-wide analysis genotyping scan was performed in all six members of family A and in the proband of family B using the HumanCytoSNP-12 DNA Analysis BeadChip Kit (Illumina, San Diego), according to manufacturer’s instruction ...
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bioRxiv - Evolutionary Biology 2022Quote: ... and sequencing (Illumina Hi-Seq) were performed by Iridian Genomes ...
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bioRxiv - Genetics 2022Quote: ... For NGS (Illumina Hi seq), these quantified DNA samples were sent to the Novo gene (leading-edge genomics services and solutions).
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bioRxiv - Cancer Biology 2019Quote: ... For tumor cells (sequenced by Illumina HiSeq 2500), genes with detected expression in at least 5 cells were included and cells with either less than 600 genes and 1500 UMI or more than 4000 genes and 20000 UMI were excluded ...
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bioRxiv - Genomics 2020Quote: ... and Hi-C sequencing (Illumina sequencing). The tissue samples were stored in liquid nitrogen before sequencing ...
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bioRxiv - Genomics 2019Quote: Raw Nanopore and Hi-C (Illumina) reads have been deposited in the NCBI SRA and are under the BioProject (PRJNA565796) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... as well as Hi-C (Illumina) chromatin interaction data ...
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bioRxiv - Genetics 2020Quote: Manta (v0.23.1, as part of Illumina’s Tumor Normal Application v2.0.0) was run for somatic structural variant calling.
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bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 4000, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
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bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 2500, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Hi-C sequencing was performed by Illumina HiSeq 2500 platform ...
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bioRxiv - Neuroscience 2023Quote: ... Libraries were sequenced on Hi-Seq2500 (Illumina) obtaining 2×50 paired-end reads ...
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Human CCR6+ Th cells show both an extended stable gradient of Th17 activity and imprinted plasticitybioRxiv - Immunology 2023Quote: ... and gene expression levels were determined using Illumina Human WG6 Expression BeadChip Version 3 arrays (Illumina Inc.) according to the manufacturer’s protocol ...
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bioRxiv - Cancer Biology 2021Quote: ... All Hi-C libraries were sequenced by Illumina sequencing ...
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bioRxiv - Genomics 2023Quote: ... and Hi-C (Illumina NovaSeq 6000, 2×150bp) for chromosome-level scaffolding (Fig ...
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bioRxiv - Immunology 2023Quote: ... Samples were sequenced on HI-Seq 2500 (Illumina). 11 nucleotide adaptors were trimmed from each read and resultant sequences were aligned to the mm10 genome using bowtie2 (Langmead and Salzberg ...
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bioRxiv - Immunology 2024Quote: ... then sequenced using Hi-seq 4000 sequencer (Illumina).
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bioRxiv - Cancer Biology 2021Quote: Library preparation was carried out using the TruSight Tumor 170 Assay (Illumina) following manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: Tumor DNA (250 ng) was analyzed using Infinium MethylationEPIC BeadChip arrays (Illumina). Raw data (idat files ...
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bioRxiv - Immunology 2019Quote: ... and sequenced on an Hi-Seq 2500 platform (Illumina).
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bioRxiv - Molecular Biology 2022Quote: ... The sequencing was processed on Hi-SEQ 2000 (Illumina) as single-end 50 base reads ...
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bioRxiv - Cancer Biology 2020Quote: ... 20 tumor-normal pairs were sequenced using the Truseq DNA kit (40Mb; (Illumina)) on the NovaSeq (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... Tumor samples were sequenced on the NovaSeq 6000 (Illumina, San Diego, CA, USA). FastQ files were aligned to the human genome and raw gene counts were determined ...
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bioRxiv - Genetics 2022Quote: ... were analyzed by Illumina Hi-Seq 2500 system (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2022Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
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bioRxiv - Pharmacology and Toxicology 2021Quote: ... with NSQ 500 hi-Output KT v2 (75 CTS, Illumina). The sequencing reads were aligned to the GRCm38 v84 Ensembl Mus musculus genome using STAR v.2.5.2a with default parameters ...
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bioRxiv - Genomics 2019Quote: ... The amplified cDNAs were sequenced using Hi-Seq2000 (Illumina, Inc.) and the sequenced cDNAs were mapped to the C ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Library sequencing was carried out on a Hi-seq4000 (Illumina) according to the method described by Pertea et al ...
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bioRxiv - Genomics 2023Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
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bioRxiv - Immunology 2024Quote: ... Tumor-specific structural variants (SVs) were identified using the manta software (https://github.com/Illumina/manta/blob/mater/docs/userGuide/README.md#introduction).
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bioRxiv - Genomics 2019Quote: ... Hi-C libraries were prepared for sequencing on HiSeq 4000 (Illumina). After sequencing ...
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bioRxiv - Immunology 2020Quote: ... 100-cycle sequencing was performed on a Hi-seq 4000 (Illumina) to achieve an average 40× coverage.
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing of paired tumor and normal libraries was performed on Illumina HiSeqX or NovaSeq6000 (Illumina) with 150 bp paired-end reads ...
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bioRxiv - Genetics 2019Quote: ... with the European individuals from the 1000G phase 3 reference panel and from the Human Genome Diversity Panel data30 (HGDP, Illumina HuHap 650k), to generate four genome-wide SNP datasets analyzed independently.
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bioRxiv - Genomics 2019Quote: ... and the Hi-C libraries were paired-end sequenced (HiSeq 2500, Illumina).
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bioRxiv - Genomics 2020Quote: ... pooled and sequenced on a Next-seq instrument (Illumina Hi-Seq 4000) using 50 cycles paired-end mode.
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bioRxiv - Genomics 2019Quote: ... A single replicate was sequenced (Illumina Hi-Seq 2000, DKFZ, Heidelberg, Germany). Hi-C QC information is available in supplementary table 4.
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bioRxiv - Genetics 2021Quote: ... the Hi-Seq 2500 or the Novaseq (Illumina, Inc. San Diego, CA). DNA samples were sequenced to a mean depth of 30x to ensure that all variants were captured.
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bioRxiv - Genomics 2023Quote: Illumina germline and tumor sequencing libraries were prepared using the TruSeq DNA PCR-Free kit (Illumina) for all samples ...
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bioRxiv - Genomics 2022Quote: ... Samples were pooled by volume using an index correction factor (from Illumina technical note “Balancing sample coverage for whole-genome sequencing and its associated index correction values”) ...
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bioRxiv - Immunology 2023Quote: ... 3 (Illumina).
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bioRxiv - Genetics 2020Quote: ... cDNA libraries were then sequenced using an Illumina Hi-Seq 2500/NOVA (Illumina).
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bioRxiv - Genomics 2020Quote: ... Hi-C libraries were paired-end sequenced on a NovaSeq 6000 system (Illumina). Raw data were processed with the ENCODE 4 pipeline for Hi-C according to ENCODE 4 standards (https://www.encodeproject.org/documents/75926e4b-77aa-4959-8ca7-87efcba39d79/).
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Dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis revealed by its hologenomebioRxiv - Genomics 2020Quote: ... The Hi-C library was sequenced on a NovaSeq 6000 platform (Illumina, USA) and generated reads with a length of 150 bp ...
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bioRxiv - Cancer Biology 2022Quote: ... Hi-C libraries were sequenced 2×150bp on a NovaSeq 6000 instrument (Illumina). Juicer were used to process raw reads and generate Hi-C contact matrices (.hic files) ...