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Citations for Illumina :
1 - 50 of 58 citations for Synapsin I derived peptide since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cell Biology 2023Quote: ... BCLs derived from Illumina sequencing of PIPseq samples were demultiplexed and output in FASTQ format using BCL-convert v4.0.3 ...
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bioRxiv - Genomics 2023Quote: ... All datasets were derived from Illumina RNA-seq experiments performed in 21 different human cell lines (293T ...
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bioRxiv - Microbiology 2021Quote: ... nodorum isolates that were derived from Illumina genome assemblies published previously (51 ...
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bioRxiv - Immunology 2022Quote: ... A composite VAR2CSA sequence derived from Illumina sequence pileups from the polyclonal maternal isolate PfM1010 was used to generate a vaccine protein from the ID1-ID2a fragment ...
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bioRxiv - Microbiology 2021Quote: LeTRS was designed to analyse FastQ files derived from Illumina paired-end or Nanopore sequencing data derived from a SARS-CoV-2 amplicon protocol ...
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bioRxiv - Genomics 2019Quote: ... The resulted single-colony derived TRE entry clones were verified by Illumina sequencing as previously described51.
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bioRxiv - Genomics 2022Quote: ... The variants were filtered with Merfin using k-mers derived from Illumina short reads ...
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bioRxiv - Developmental Biology 2023Quote: ... MVs-derived DNA was amplified using the Sureplex DNA amplification system (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Plant Biology 2020Quote: ... 10U/mL DNAse I (Illumina, USA). After centrifugation ...
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bioRxiv - Plant Biology 2021Quote: ... using (i) transcript isoforms from Illumina mRNA-seq and PacBio Iso-seq data ...
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bioRxiv - Developmental Biology 2024Quote: ... 2.5𝜇l Tagment DNA enzyme I (Illumina) and 22.5𝜇l nuclease-free water for 30min at 37°C ...
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bioRxiv - Genetics 2021Quote: We converted the published set of 13,037,955 loci (derived from whole-genome short-read Illumina sequencing using Illumina HiSeq 2000 by [33] ...
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bioRxiv - Genomics 2021Quote: ROI-derived oligos were each uniquely dual-indexed using the i5 x i7 system (Illumina). A 4 μl aliquot of each re-suspended ROI aspirate containing the photocleaved oligos was amplified in a PCR reaction containing 1 μM i5 and i7 primers and 1× NSTG PCR Master Mix ...
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bioRxiv - Pathology 2023Quote: ROI-derived oligos were each uniquely dual-indexed using the i5 x i7 system (Illumina). A 4 μl aliquot of each re-suspended ROI aspirate containing the photocleaved oligos was amplified in a PCR reaction containing 1 μM i5 and i7 primers and 1× NSTG PCR Master Mix ...
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bioRxiv - Cancer Biology 2021Quote: ... Single cell derived cDNA libraries were sequenced on NovaSeq S4 cell sequencer (Illumina, San Diego, CA). Cellranger (10x Genomics ...
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bioRxiv - Genomics 2021Quote: ... Minimap2 44 was used to align the MinION read sequences to the gene sequences derived from Illumina sequences obtained in our previous transcriptome analyses 12 to the contigs ...
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bioRxiv - Molecular Biology 2021Quote: ... ChIP-derived DNA fragments were submitted for further manipulation by standard ChIP-seq library preparation techniques (Illumina) and Advanced Sequencing on an Illumina NextSeq 500 sequence analyzer as 75 bp single-end reads.
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bioRxiv - Genomics 2021Quote: ... 2.5 μl Tagment DNA enzyme I (Illumina 15027865), in water ...
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bioRxiv - Genomics 2021Quote: ... 2.5 µl Tagment DNA enzyme I (Illumina 15027865), and incubated at 37°C for 30 min on a heat block ...
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bioRxiv - Neuroscience 2022Quote: ... 2.5 μl Tagment DNA enzyme I (Illumina, 15027865), in water ...
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bioRxiv - Genetics 2021Quote: ... and iPSC-derived neural progenitor cells (NPC-FGF) was assessed using the Infinium Human Methylation EPIC BeadChip (Illumina), according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2020Quote: ... Transcript evidence was derived from 25 RNA-seq read sets (BioProject PRJNA450098, Illumina 2500, 150 bp paired-end) using StringTie v1.3.3b (Pertea et al ...
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bioRxiv - Immunology 2020Quote: ... we obtained publicly available CD8+ T-cell derived genome wide DNA methylation profiles (K450 Illumina DNA methylation arrays) from two previously published adult patient cohort ...
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bioRxiv - Evolutionary Biology 2019Quote: ... we used contigs derived from the assembly of low-coverage next-generation sequencing (Illumina HiSeq platform; see below) of Crocus cartwrightianus ...
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bioRxiv - Genomics 2021Quote: ... sex and 20 genetic principal components (derived from multidimensional scaling of genotype data from the Illumina 610-Quadv1 array).
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bioRxiv - Immunology 2023Quote: ... Genotyping was carried out using DNA derived from each individual donor using the Infinium Global Screening Array (GSA) v2.0 BeadChip (Illumina) and performed by Macrogen (Korea) ...
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bioRxiv - Microbiology 2020Quote: ... A reference genome from strain QMA0248 was constructed using both long reads derived from a single Smrt Cell using the PacBio RS II system with P4C2 chemistry and short reads from Illumina HiSeq2000 derived from Nextera XT paired-end libraries as reported elsewhere (NCBI accession no ...
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bioRxiv - Developmental Biology 2020Quote: Pearson correlations were calculated among all genes across a catalog of 38 tissues/cell types derived from all three germ layers (16 Illumina BodyMap 2.0 tissues ...
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bioRxiv - Neuroscience 2023Quote: ... and were subsequently sequenced at paired-end 150 bp (DNA libraries) and paired-end 100 bp (RNA derived libraries) on a NovaSeq X Plus (Illumina) platform.
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bioRxiv - Genomics 2021Quote: ... and 2.5 µL Nextera Tagment DNA Enzyme I (Illumina # 15027865). Subsequently ...
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bioRxiv - Genetics 2021Quote: ... sequencing libraries were generated from whole blood-derived fragmented DNA using the TruSeq DNA Nano kit (Illumina, Inc., San Diego, USA) and sequence reads were generated using a HiSeq X Ten1 system (Illumina ...
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bioRxiv - Microbiology 2023Quote: The whole genome sequence of the mink-derived H5N1 clade 2.3.4.4b virus was determined using the Illumina MiSeq sequencing platform (Illumina, San Diego, CA, USA). Briefly ...
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bioRxiv - Genomics 2020Quote: ... (i) TruSeq Stranded Total RNA Library Preparation Kit (Illumina Inc, USA) for shotgun metagenomics RNA sequencing ...
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bioRxiv - Genetics 2021Quote: We converted the published set of 13,037,955 loci (derived from whole-genome short-read Illumina sequencing using Illumina HiSeq 2000 by [33]) into VCF format ...
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bioRxiv - Evolutionary Biology 2022Quote: ... although sequence data for each isolate is derived from pools of individuals (except from PCR-free Illumina sequence data for S. avenae), all individuals sequenced for a given isolate are expected to contain the same two haplotypes and so sequence data can be combined to reconstruct fully phased haplotypes for each isolate.
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bioRxiv - Neuroscience 2023Quote: ... Sequencing of the cDNA library derived from the isolated hippocampal astrocytes was performed using the NextSeq 500 system (Illumina, San Diego, USA). Raw data from single-end sequences were cleaned using Trimmomatic (version 0.39 ...
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bioRxiv - Genomics 2020Quote: ... which performs (i) adapter trimming with cutadapt (26) (with the standard Illumina adapter AGATCGGAAGAGCAC and options -- minimum-length 28 -e 0.2 -o 9 --nextseq-trim 20) ...
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bioRxiv - Microbiology 2023Quote: ... the following RNA-derived SRA libraries from BioProjects PRJNA730226 and PRJNA730346 (Gao et al., 2021) were used: SRX10900611– SRX10900613 (150-bp Illumina reads from sporozoites), SRX10900614–SRX10900616 (150-bp Illumina reads from unsporulated oocysts) ...
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bioRxiv - Genomics 2021Quote: ... and 2.5 µL Tagment DNA Enzyme I (Illumina, San Diego, CA; cat. 20034198) into 50 µL total for the transposition reaction ...
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bioRxiv - Microbiology 2022Quote: ... 22.5 μL H2O and 2.5 μL Nextera Tagment DNA enzyme I (Illumina, USA). After incubation for 30 min at 37 °C ...
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bioRxiv - Microbiology 2023Quote: ... The tissue-derived Illumina libraries were sequenced using a 2 x 250 cycle MiSeq Reagent Kit v2 on a MiSeq platform (Illumina Inc., San Diego, CA, USA). The 16S rRNA gene V4-V5 region was amplified from each water sample and sequenced using the Illumina MiSeq platform (Illumina Inc. ...
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bioRxiv - Evolutionary Biology 2022Quote: ... For small RNA sequencing I used the TruSeq Small RNA Sample Preparation Kit (Illumina) to generate the cDNA library using selected constructs of sizes 145 to 160 bp in a 6% PAGE gel ...
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bioRxiv - Microbiology 2021Quote: ... and included: (i) quality control and adapter trimming performed using bcl2fastq (for Illumina reads) and porechop (for Nanopore reads ...
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bioRxiv - Microbiology 2023Quote: ... guillouiae I-MWF was performed GS using an Illumina NovaSeq PE150 platform (Illumina Inc.) at Novogene (China) ...
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bioRxiv - Microbiology 2020Quote: ... using either (i) TruSeq stranded with a eukaryotic rRNA depletion step (RiboZero Gold kit, Illumina) for ALG_2 ...
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bioRxiv - Plant Biology 2024Quote: ... and second strand synthesis buffer (containing dNTPs, RNase H and E. coli polymerase I, Illumina) was added so that the second strand was produced by nick-translation ...
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bioRxiv - Immunology 2021Quote: ... Peptides carried by the MCRs from sorted cells were amplified from cDNA by RT-PCR using the peptide flanking regions and sequenced on a miniSeq (Illumina). Sequences from the Illumina output files were trimmed ...
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bioRxiv - Molecular Biology 2020Quote: ... The quality of the library peptides was assessed by Sanger sequencing of individual plaques from the packaging expansion and the clonal distribution assessed by Illumina sequencing.
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bioRxiv - Genomics 2019Quote: ... We then compared the extracted Nanopore barcode sequences and all possible permutation up to a defined edit distance with: (i) The cellBCs identified by Illumina sequencing for the same gene if the Nanopore read matches a known gene in the Illumina dataset ...
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bioRxiv - Genetics 2021Quote: WGS of constitutional DNA was performed using the Illumina HiSeq platform as described previously.1 Targeted MBD4 mutation screening was performed (i) using a custom MIP capture panel and sequenced on a NextSeq500 (Illumina) system ...