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Citations for Illumina :
151 - 200 of 798 citations for Mac 1 SAP mouse human since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Molecular Biology 2023Quote: ... Genome-wide DNA methylation patterns were evaluated by Infinium Human Methylation 850 K BeadChips (Illumina), which determine the methylation levels of 853,307 CpG sites ...
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bioRxiv - Biophysics 2023Quote: ... we aligned the trimmed reads to the human reference genome (hg19, downloaded from Illumina’s iGenomes) using Hisat2 94 with “-k 1 –no-spliced-alignment –phred33” parameters and stored them as binary alignment maps (BAM) ...
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bioRxiv - Neuroscience 2023Quote: ... Mouse GRCm38/mm10 genome annotation was accessed from Illumina’s iGenomes repository (available at https://support.illumina.com/sequencing/sequencing_software/igenome.html ...
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bioRxiv - Genomics 2019Quote: ... and hybridized the samples to the Illumina Human Methylation 450K BeadChip array (Illumina, San Diego, CA), according to the manufacturers’ recommended protocols ...
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bioRxiv - Bioengineering 2022Quote: ... Hybridization of 750ng of cRNA on Human HT-12 v4.0 Expression BeadChip (Illumina, BD-103-0604), were performed according to the manufacturer’s instructions ...
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bioRxiv - Systems Biology 2020Quote: ... Cohort 2 gene expression data were measured using a Human Ref-8 BeadChip array (Illumina, Inc) with ∼22k probes ...
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bioRxiv - Developmental Biology 2022Quote: Since the human epidemiological cohort data were generated on a different genomic platform (Illumina 450K array), we developed an imputation scheme for converting measurements between the two platforms ...
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Coding and non-coding drivers of mantle cell lymphoma identified through exome and genome sequencingbioRxiv - Genomics 2019Quote: ... we used the Agilent SureSelect Human All Exon kits for library preparation and HiSeq2000 instruments (Illumina) for sequencing ...
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bioRxiv - Immunology 2019Quote: ... Hybridization of the cRNA was performed on an Illumina Human-HT12 Version 4 chip set (Illumina). Microrarray data were exported from GenomeStudio (Illumina ...
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bioRxiv - Genetics 2019Quote: ... The sample was genotyped on the Illumina Human Core Exome Array (Illumina, San Diego, CA, US). GWAS QC was performed using standard methods and imputation was done using the HRC panel [63] on the Sanger Imputation server (https://imputation.sanger.ac.uk/) ...
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bioRxiv - Pharmacology and Toxicology 2020Quote: ... DNA methylation was quantified using Infinium® Human Methylation 450K BeadChip (Illumina Inc.; San Diego, CA).
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bioRxiv - Molecular Biology 2023Quote: ... The RNA sequencing was performed at BCM Human Genome Sequencing Center using NovaSeq 6000 platform (Illumina). The raw fastq files were first quality checked using FastQC v0.11.8 software (http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/) ...
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bioRxiv - Molecular Biology 2023Quote: ... Genome-wide DNA methylation was analysed on 850000 CpGs with the Infinium Human MethylationEPIC Kit (Illumina) according to the manufacturer’s instructions.
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bioRxiv - Genomics 2024Quote: ... combined with methylation data collected from the public TCGA LUAD study (Illumina Human Methylation 450k BeadChip) (Supplementary Table 1) ...
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bioRxiv - Genomics 2024Quote: Human islet RNA-seq libraries were prepared from total RNA using the stranded TruSeq kit (Illumina). ERCC Mix 1 or Mix 2 spike-ins were randomly added to each sample (Thermo Fisher ...
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bioRxiv - Bioengineering 2024Quote: The compressed paired-end human mRNA-seq data in fastq format over 80 gigabytes from Illumina PE150 ...
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bioRxiv - Molecular Biology 2024Quote: ... we used the 318 curated files containing raw human blood expression data (FASTQ containing Illumina reads) of the Bgee project (see supplementary data of (Bastian et al ...
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bioRxiv - Cell Biology 2023Quote: ... Infinium Mouse Methylation BeadChip (Illumina, Inc., San Diego, CA, USA) arrays were used to profile DNA methylation genome wide ...
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bioRxiv - Genomics 2020Quote: ... microRNA expression profiling was performed using the human v2.0 microRNA Expression BeadChip (Illumina, Inc., San Diego, Calif) with 1146 microRNAs covering 97% of the miRBase 12.0 database according to the manufacturer’s instructions.
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bioRxiv - Genetics 2022Quote: ... Libraries were prepared using the Agilent SureSelect XT Human All Exon + UTR (v8) kit followed by Illumina NovaSeq 6000 150 cycle paired end sequencing ...
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bioRxiv - Molecular Biology 2019Quote: ... mRNA expression levels were extracted from microarray analyses performed on a Human HT-12-v4 BeadChip (Illumina) after labeling (Ambion ...
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Human CCR6+ Th cells show both an extended stable gradient of Th17 activity and imprinted plasticitybioRxiv - Immunology 2023Quote: ... and gene expression levels were determined using Illumina Human WG6 Expression BeadChip Version 3 arrays (Illumina Inc.) according to the manufacturer’s protocol ...
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bioRxiv - Neuroscience 2023Quote: ... and then aligned to the mouse genome using Top-Hat (Illumina) and fragments were assigned to genes using the FeatureCounts program (iCONICS core facility ...
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bioRxiv - Genetics 2021Quote: ... and iPSC-derived neural progenitor cells (NPC-FGF) was assessed using the Infinium Human Methylation EPIC BeadChip (Illumina), according to the manufacturer’s protocol ...
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bioRxiv - Molecular Biology 2020Quote: ... Reads were confirmed to be post-quality control by Prinseq and mapped to the human donor sequence (hCoV-19/Germany/BavPat1/2020|EPI_ISL_406862|2020-01-28) using BWA (Illumina) and Pomoxis mini_align (Minion) ...
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bioRxiv - Neuroscience 2019Quote: ... 332 cells from eight adult human brains (three males and five females) were collected and profiled by Illumina MiSeq and Illumina NextSeq 500 ...
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bioRxiv - Cancer Biology 2021Quote: ... RNAseq-based gene expression and methylation array data (either Illumina human methylation27K array, n = 15 genomes; or Illumina human methylation450K array ...
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bioRxiv - Genomics 2022Quote: ... the samples were applied following the Illumina Infinium Human Methylation DNA chip manufacturer protocols (Illumina, San Diego, CA). Chips were analyzed using the Illumina Hi-Scan system at the McDonnell Genome Institute (MGI ...
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bioRxiv - Neuroscience 2021Quote: Analysis of pluripotency gene expression profile was performed using the Human-HT-12-v4 expression BeadChip Kit (Illumina) and subsequent Pluritest analysis ...
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bioRxiv - Microbiology 2022Quote: ... Raw sequencing reads were aligned to the hg19 human genome with the Basespace RNA-Seq Aligment application (Illumina). GO-term enrichment was performed using Biojupies (44) ...
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bioRxiv - Cell Biology 2022Quote: We identified genes with significantly differential transcript levels following the RSEM-EBSeq workflow outlined at http://deweylab.github.io/RSEM and used the sequences and annotation of UCSC human genome v19 (hg19) from Illumina igenome ...
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bioRxiv - Neuroscience 2022Quote: ... Pair-end reads of cDNA sequences were aligned back to the human genome (UCSC hg19 from Illumina iGenome) by the spliced read mapper TopHat (v2.0.4 ...
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bioRxiv - Systems Biology 2022Quote: ... the alignment of RNA-seq reads against the human reference genome (NCBI build37.2, downloaded from iGenome of Illumina) was performed using TopHat2 (version 2.0.13 ...
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bioRxiv - Molecular Biology 2023Quote: Raw count data of 2700 PBMCs (PBMCs from a health human donor, single cell immune profiling dataset by Cell Ranger 1.1.0 on Illumina NextSeq 500 with ∼69,000 reads per cell ...
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bioRxiv - Molecular Biology 2021Quote: ... cDNA library construction using TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Human (Illumina #RS-122-2201) and sequencing on an Illumina NovaSeq6000 platform was performed by Macrogen (Tokyo ...
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bioRxiv - Genomics 2019Quote: Placental DNAm from the fetal side was assessed with the Infinium Human-Methylation450 array (Illumina, San Diego, CA USA). See Supplementary Methods file for extra details on placenta collection ...
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bioRxiv - Developmental Biology 2021Quote: RNA from sorted human and naked mole-rat populations was sequenced at ∼100 million reads on a HiSeq2500v4 (Illumina), the SMARTer® Ultra® Low RNA Kit (Takara ...
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bioRxiv - Neuroscience 2020Quote: ... nDNA was extracted from whole blood and genotyped on Illumina GWAS arrays for ADNI1 (Illumina Human 610-Quad BeadChip), ADNI GO/2 participants (Illumina HumanOmniExpress BeadChip) ...
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bioRxiv - Neuroscience 2019Quote: ... Genome integrity for iPSC lines and their corresponding fibroblasts was assessed using the Human OmniExpress24 array (∼700,000 markers, Illumina) and analysed using KaryoStudio software (Illumina).
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bioRxiv - Microbiology 2020Quote: Raw reads were aligned to the human genome (hg19) using the RNA-Seq Aligment App on Basespace (Illumina, CA), following differential expression analysis using DESeq213 ...
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Naked Mole-Rat Hematopoietic Stem and Progenitors are Highly Quiescent with an Inherent Myeloid BiasbioRxiv - Cell Biology 2021Quote: RNA from sorted human and naked mole-rat populations was sequenced at ∼100 million reads on a HiSeq2500v4 (Illumina), the SMARTer® Ultra® Low RNA Kit (Takara ...
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bioRxiv - Cell Biology 2020Quote: ... Trimmed reads were mapped to the National Cener for Biotechnology Information (NCBI) human reference genome (GRCh38) downloaded from Illumina iGenomes (http://igenomes.illumina.com.s3-website-us-east-1.amazonaws.com/Homo_sapiens/NCBI/GRCh38/Homo_sapiens_NCBI_GRCh38.ta r.gz ...
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bioRxiv - Microbiology 2020Quote: ... Raw reads were aligned to the human genome (hg19) using the RNA-Seq Aligment App on Basespace (Illumina, CA), following differential expression analysis using DESeq227 ...
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bioRxiv - Genetics 2019Quote: Genotyping was performed by 23andMe using the Illumina Infimum DNA Human OmniExpress-24 BeadChip V4 (Illumina, San Diego, CA). This genotyping platform consists of approximately 570,000 SNPs ...
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bioRxiv - Genomics 2021Quote: ... Raw sequencing reads on FASTQ files were submitted to base quality control and mapped to human reference genome GRCh37/hg19 utilizing the MiSeq Reporter software (MSR, v2.6, Illumina). Variant calling was executed using two algorithms ...
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bioRxiv - Neuroscience 2021Quote: ... Genome integrity and cell identity tracking was assessed using the Human CytoSNP-12v2.1 beadchip array or OmniExpress24 array (Illumina) on genomic DNA generated using the All-Prep kit (Qiagen ...
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bioRxiv - Microbiology 2020Quote: Raw reads were aligned to the human genome (hg19) using the RNA-Seq Alignment App on Basespace (Illumina, CA). The top 2000 gene counts with the highest variance were log transformed and Z-score normalized ...
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bioRxiv - Cancer Biology 2023Quote: ... indexed libraries for human WGS were constructed from 1.0 μg of gDNA using the TruSeq DNA PCR-Free Library Prep Kit (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Systems Biology 2024Quote: ... were performed using Illumina Human Methylation 450K (hitherto called 450K arrays)30,31 and Cuvertino et al used Infinium Methylation EPIC bead chip (Illumina)58 ...
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bioRxiv - Evolutionary Biology 2023Quote: ... (2016) sequenced mouse whole genomes to 11-26x coverage (Illumina HiSeq 2000) from natural populations of house mouse (Mus musculus) ...