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Citations for Illumina :
1 - 50 of 400 citations for ETS Related Transcription Factor Elf 3 ELF3 Antibody HRP since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: The V3/V4 variable region of the 16S rRNA gene was amplified using primers 341F 5’CCTACGGGNGGCWGCAG′3 and 785R 5′GACTACHVGGGTATCTAATCC′3 (Klindworth et al., 2013 with Illumina Nextera XT overhang adapters for a dual-barcoding PCR library preparation approach ...
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bioRxiv - Genomics 2021Quote: ... and 1µM Dexamethasone or 0.1% ethanol for 3 hours. Transposition was performed using the OmniATAC protocol (Corces et al. 2017) and the tagment DNA TDE1 enzyme (Illumina, 20034197). DNA was purified using the MinElute PCR purification kit (Qiagen) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... We performed ddRADseq (Peterson et al. 2012) with library preparation as follows (per Recknagel et al., 2015 with modification of Illumina adapters; Rodríguez et al. 2017): 1 μg of DNA from each individual was double-digested using the PstI-HF and AclI restriction enzymes (NewEngland Biolabs) ...
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bioRxiv - Microbiology 2023Quote: ... Whole plasmid sequences were assembled using Unicycler v0.4.8 (Wick et al., 2017) and Flye v2.6 (Lin et al., 2016) and polished by Illumina reads using Pilon v1.23 (Walker et al. ...
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bioRxiv - Neuroscience 2024Quote: ... Allelic variants of AD-related genes including APOE rs429358 and rs7412 were characterized using pyrosequencing (PyroMark24 or PyroMark96) or DNA microarray (Illumina). Participants were classified as either APOE4+ (N= 35 females ...
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bioRxiv - Cancer Biology 2024Quote: ... the DNA library was enriched for 1,056 genes related to human immunology (10x Genomics; PN 1000259, PN 1000248, PN1000249) and sequenced on a NovaSeq instrument (Illumina) with paired-end reads of 2 × 92 bp ...
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bioRxiv - Genetics 2021Quote: The ReCombine software package (Anderson et al. 2011; Oke et al. 2014) was used on Fastq files from Illumina’s Casava pipeline to align all sequences to reference genomes ...
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bioRxiv - Developmental Biology 2020Quote: Library preparation was adapted from previous protocols(Flynn et al., 2015; Ingolia et al., 2012) and the ARTseq Ribosome Profiling Kit manual (Epicentre, Illumina). In summary ...
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bioRxiv - Immunology 2022Quote: RNA sequencing was done at IMMGEN using Smart-seq2 protocol (Picelli et al., 2013) (Picelli et al., 2014) on a NextSeq500 sequencer (Illumina). Following sequencing ...
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bioRxiv - Microbiology 2024Quote: ... The sequencing was performed by Macrogen (the Netherlands) with Bac341F and Bac806R primers (Caporaso et al., 2012; Herlemann et al., 2011) using an Illumina MiSeq sequencer (Illumina). Paired-end (2x 301bp ...
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bioRxiv - Genetics 2020Quote: ... reverse transcription was performed with Reverse Transcription Primer (RTP) (Illumina sequence, ordered via IDT) and SuperScript IV Reverse Transcriptase (ThermoFisher #18090050) ...
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bioRxiv - Genomics 2021Quote: The full-coding region of 48 CRC-related genes (Supplementary Table S1) was sequenced using a MiSeq platform (Illumina, San Diego, CA, USA) on a subset of 44 unpaired tumor samples ...
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bioRxiv - Neuroscience 2021Quote: The method used to amplify RNA was adapted from Abruzzi et al (Abruzzi et al., 2015) and was performed using TruSeq® Small RNA Library Prep kit (Illumina, USA) and following the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... coli AIEC strains (Buisson A et al., 2021) was sequenced by Illumina technology to generate draft genome contigs ...
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bioRxiv - Genomics 2024Quote: ... as described in (Buendía-Abad et al. 2021) and sequenced by Illumina MiSeq in 2023 (NCBI BioProject PRJNA863431 ...
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bioRxiv - Genomics 2022Quote: ... Samples were pooled by volume using an index correction factor (from Illumina technical note “Balancing sample coverage for whole-genome sequencing and its associated index correction values”) ...
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bioRxiv - Immunology 2023Quote: ... 3 (Illumina).
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bioRxiv - Genomics 2020Quote: ... 1.0 μl of 2.5 μM uniquely-barcoded Tn5 from Illumina (Cusanovich et al., 2015) was pipetted into each well of the 96 well plate ...
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bioRxiv - Cell Biology 2021Quote: ... The 3’ preadenylated linker (NEBNext 3’SR adaptor for Illumina; /5rApp/AGA TCG GAA GAG CAC ACG TCT /3AmMO/ ...
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bioRxiv - Cell Biology 2024Quote: ... 3’ poly(A) tail and the 3’ adapter from Illumina were trimmed with the TrimGalore 0.06.10 tool (Babraham Bioinformatics ...
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bioRxiv - Microbiology 2020Quote: ... 3’-adapter (Illumina) ligation was performed ...
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bioRxiv - Immunology 2023Quote: ... 3’ adapters (Illumina Universal Adapter ...
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bioRxiv - Evolutionary Biology 2022Quote: We used Stacks v.2.41 (Catchen et al. 2011; 2013) to build loci from Illumina reads ...
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bioRxiv - Microbiology 2020Quote: ... with dual-barcoding as per Kozich et al.25 with adaptors from Illumina (California, USA). A mock community26 was included to assess sequencing quality ...
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bioRxiv - Plant Biology 2021Quote: ... using custom sequencing primer (Wendler et al. 2014) as given in manufacturers protocol (Illumina Inc).
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bioRxiv - Genomics 2022Quote: Following the manufacturer’s protocol of short read DNA sequencing from Illumina (Kozarewa et al., 2009), the library was prepared ...
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bioRxiv - Genomics 2024Quote: ... TERRA transcription start sites were determined by TERRA enrichment from Illumina short-reads ...
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bioRxiv - Animal Behavior and Cognition 2020Quote: ... Raw reads were quality checked using FastQC v.0.11.8 (Andrews et al., 2010) followed by Illumina adapter removal using Trimmomatic v.0.38 ...
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bioRxiv - Microbiology 2023Quote: ... Unicycler (v0.5.0) (Wick et al., 2017) was used to generate de novo genome assembly from Illumina and Oxford Nanopore sequencing reads ...
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bioRxiv - Genomics 2024Quote: ... Gap-filled scaffolds were polished with HyPo (Kundu et al., 2019) by using mapped short (Illumina) and long reads (PacBio) ...
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bioRxiv - Developmental Biology 2021Quote: ... Tagmentation reaction was performed as described previously (Buenrostro et al., 2013) with Nextera Sample Preparation Kit (Illumina). After tagmented DNA was purified using MinElute kit (Qiagen) ...
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bioRxiv - Genomics 2022Quote: ... ciliaris (deposited in SRA Sequence Read Archive under accession SRR8666664, Illumina HiSeq 2500; Nevill et al., 2020) were downloaded and used to discover the most abundant repetitive DNA sequences ...
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bioRxiv - Plant Biology 2024Quote: ... we assessed SNP genotype quality across individuals using the methodology proposed by Illumina (Tindall et al 2010). Briefly ...
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bioRxiv - Genomics 2023Quote: ... (Marçais and Kingsford, 2011) and Genomescope (v2.0) (max k-mer coverage = 1,000,000) (Ranallo-Benavidez et al., 2020) from Illumina short reads ...
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bioRxiv - Genomics 2023Quote: ... we used Manta version 1.6.0 (Chen et al., 2015) according to instructions for germline joint samples analysis (https://github.com/Illumina/manta/blob/master/docs/userGuide/README.md#germline-configuration-examples) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... All samples’ transcriptomes were assembled de novo using Trinity v2.11.0 (Haas et al.102) after adapter trimming with Trimmomatic97 (--trimmomatic “ILLUMINACLIP:/home/uni08/applbioinfdevries/DATA_ILLUMINA/novogene_adapter_sequences.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36”) ...
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bioRxiv - Physiology 2021Quote: ... 3’ and 5’ adaptors (Illumina) were ligated and the resulting product was reverse transcribed to generate cDNA by PCR ...
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bioRxiv - Microbiology 2021Quote: ... 3) DC3000 + A (Illumina only), 4 ...
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bioRxiv - Immunology 2021Quote: ... Group 3 (North America, Illumina), Group 4 (French European ...
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bioRxiv - Neuroscience 2022Quote: ... was performed at the Génome Québec Centre D’Expertise et de Services on a Novaseq 6000 sequencer (Illumina, Inc), using 150bp paired-end reads ...
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bioRxiv - Microbiology 2020Quote: ... library preparation was carried out using an adapted tagmentation and Nextera kit from Illumina (Baym et al. 2015). Raw reads were deposited to NCBI SRA under BioProject PRJNA646688.
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bioRxiv - Cell Biology 2020Quote: ... Raw data were cleaned up with trimmomatic/0.36 (Bolger et al., 2014) to remove sequences originating from Illumina adaptors and low quality reads ...
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bioRxiv - Molecular Biology 2022Quote: ... We used Stringtie version 2.1.7 in mix mode (Kovaka et al., 2019) to generate de novo transcriptome assemblies from Illumina RNAseq replicates and pooled Nanopore DRS data ...
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bioRxiv - Evolutionary Biology 2022Quote: ... or to the Plateforme de séquençage et de génotypage des génomes (CRCHUL, Quebec, Canada) for paired-end 250 bp sequencing on a NovaSeq (Illumina). All raw data are available at SRA BioProject PRJNA842350 (accession numbers SRR19419448 and SRR19419449).
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bioRxiv - Genomics 2023Quote: ... The constructed Hi-C sequencing library was first subjected to a test run of sequencing to evaluate valid interaction read pairs using HiCPro (v3.1.0) (Servant et al., 2015) before high coverage sequencing by Illumina NovaSeq 6000 to yield 705 Gb (∼138× genome coverage ...
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bioRxiv - Genomics 2023Quote: Quality-based read trimming was performed to remove poor-quality reads and contaminating adapter sequences using trimmomatic v.0.39 (Bolger et al., 2014) (parameters: ILLUMINACLIP:Illumina-adapters.fa:2:30:10 SLIDINGWINDOW:10:20 MINLEN:50) ...
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bioRxiv - Biochemistry 2024Quote: Forward Illumina Adapter: 5’-ACACTCTTTCCCTACACGACGCTCTTCCGATCTXXXX-3’ Reverse Illumina Adapter: 5’-GACTGGAGTTCAGACGTGTGCTCTTCCGATCTXXXX-3’ Next generation (Illumina) sequencing was performed by Azenta (Amplicon-EZ) ...
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bioRxiv - Molecular Biology 2021Quote: ... cDNA libraries were prepared by reverse transcription and PCR amplification followed by Illumina deep sequencing ...
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bioRxiv - Systems Biology 2020Quote: ... (Utrecht, The Netherlands) for Targeted Locus Amplification (TLA) (de Vree et al., 2014) and next-generation sequencing by Illumina MiniSeq ...
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bioRxiv - Genetics 2020Quote: ... SpliceAI scores for the variants were obtained using SpliceAI tool (v1.3, https://github.com/Illumina/SpliceAI (Jaganathan et al. 2019)) ...