Labshake search
Citations for Illumina :
1 - 50 of 88 citations for Des Arg10 Kallidin since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Microbiology 2023Quote: ... Universitat Autònoma de Barcelona (Illumina pair-end 2X300 bp ...
-
bioRxiv - Microbiology 2023Quote: De Novo Assembly from Illumina reads was performed using MEGAHIT (Li et al ...
-
bioRxiv - Evolutionary Biology 2022Quote: ... or to the Plateforme de séquençage et de génotypage des génomes (CRCHUL, Quebec, Canada) for paired-end 250 bp sequencing on a NovaSeq (Illumina). All raw data are available at SRA BioProject PRJNA842350 (accession numbers SRR19419448 and SRR19419449).
-
bioRxiv - Microbiology 2021Quote: ... Results were de-multiplexed with bcl2fastq v2.17.1.14 (Illumina). Reads were quality filtered and trimmed using Bioconductor package ShortRead (91 ...
-
bioRxiv - Cell Biology 2022Quote: ... Genome samples were de-multiplexed using bcl2fastq (Illumina), assembled using Burrow-Wheeler Aligner (Li and Durbin ...
-
bioRxiv - Developmental Biology 2021Quote: ... Sample de-multiplexing was performed using CASAVA 1.8.2 (Illumina).
-
bioRxiv - Immunology 2019Quote: ... Samples were de-multiplexed with bcl2fastq tool from Illumina, and tag bam files with read sequence extended were processed to differentiate molecular barcodes ...
-
bioRxiv - Cell Biology 2019Quote: NextSeq raw files were de-multiplexed using bcl2fastq (Illumina) with 0 nt mismatch for indexes and assembled using the Burrows-Wheeler Aligner (Li and Durbin ...
-
bioRxiv - Molecular Biology 2020Quote: ... After de-multiplexing sequenced raw files with bcl2fastq (Illumina), quality was checked with FastQC[36] ...
-
Genetic heterogeneity in the Salmonella Typhi Vi capsule locus: A population genomic study from FijibioRxiv - Microbiology 2023Quote: ... De novo draft genome assemblies were generated from Illumina short reads using SPAdes v v3.14.1 and were screened for known antimicrobial resistance determinants in AMRFinderPlus (https://github.com/MDU-PHL/abritamr ...
-
bioRxiv - Cell Biology 2023Quote: ... and reads were de-multiplexed using Illumina bcl2fastq (Illumina). De-multiplexed reads were then aligned to the mouse GRCm38/mm10 sequence using STAR-2.7.9a ...
-
bioRxiv - Molecular Biology 2024Quote: Raw sequencing reads were de-multiplexed using bcl2fastq (Illumina). Adapters were trimmed using cutadapt (v.1.18 ...
-
bioRxiv - Molecular Biology 2024Quote: Raw sequencing reads were de-multiplexed using bcl2fastq (Illumina). Trimming ...
-
bioRxiv - Microbiology 2019Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) and adapter sequences were removed (Clip adaptor sequence ...
-
bioRxiv - Genomics 2021Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) [40] and adapter sequences were removed (Clip adaptor sequence ...
-
bioRxiv - Immunology 2021Quote: ... After de-multiplexing using the MiSeq Reporter software (Illumina Inc.), the analysis of the read sequences was performed by a Visual Basic-based in-house software (NGSSequence Analyser ...
-
bioRxiv - Pathology 2023Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) and adapter sequences were removed (Clip adaptor sequence ...
-
bioRxiv - Plant Biology 2023Quote: ... and automatically de-multiplexed by the BaseSpace Sequence Hub (Illumina).
-
bioRxiv - Plant Biology 2023Quote: Raw sequencing data were de-multiplexed with bcl2fastq software (Illumina). FASTQ files were mapped to the TAIR10 genome using STAR with default parameters (Dobin et al ...
-
bioRxiv - Molecular Biology 2023Quote: ... Dual indexed samples were de-multiplexed using bcl2fastq software (Illumina).
-
bioRxiv - Microbiology 2019Quote: ... De-convolution was performed using the CASAVA software (Illumina, United States). Sequencing data are publicly available under the BioProject PRJNA555042.
-
bioRxiv - Evolutionary Biology 2020Quote: ... The reference-guided and de novo RNA-seq assemblies from Illumina short read data (Supplementary Table 1a ...
-
bioRxiv - Genomics 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
-
bioRxiv - Evolutionary Biology 2022Quote: ... De-convolution was performed using the CASAVA software (Illumina, United States).
-
bioRxiv - Genetics 2022Quote: ... followed by de-multiplexing with the bcl2fastq 2.17 software from Illumina.
-
bioRxiv - Evolutionary Biology 2019Quote: Barcoded reads were de-multiplexed using the CASAVA pipeline 1.8 (Illumina). The obtained raw sequencing reads were quality checked and over-represented ...
-
bioRxiv - Animal Behavior and Cognition 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
-
bioRxiv - Cell Biology 2020Quote: ... Paired de-multiplexed fastq files were generated using CASAVA software (Illumina) and processed using tools from CLC Bio (QIAGEN).
-
bioRxiv - Genomics 2022Quote: We de-multiplexed paired-end reads using BCL2FASTQ v2.17.1.14 (Illumina, Inc.) and removed adapter sequences using CUTADAPT v1.3 (Martin 2011) ...
-
bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
-
bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
-
bioRxiv - Molecular Biology 2024Quote: ... Base calling and de-multiplexing were performed using the bcl2fastq2 (Illumina) v2.20 ...
-
bioRxiv - Molecular Biology 2022Quote: ... The raw MiniSeq output was de-multiplexed using bcl2fastq2 (Illumina, version 2.20.0) with the flag --barcode-mismatches 0 ...
-
bioRxiv - Cell Biology 2019Quote: Sequence data was de-multiplexed using bcl2fastq2 Conversion Software v2.18 (Illumina Inc.) and quality analysed using FastQC ...
-
bioRxiv - Physiology 2020Quote: ... Sequence data was de-multiplexed using bcl2fastq2 Conversion Software v2.18 (Illumina Inc.) and quality analysed using FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
-
bioRxiv - Microbiology 2021Quote: ... A draft wild type phi47 genome was assembled de novo from Illumina reads obtained from MiGS ...
-
bioRxiv - Genomics 2019Quote: ... we used the de novo and genome-guided transcriptome assemblies from Illumina short-read sequence data ...
-
bioRxiv - Molecular Biology 2020Quote: ... The FASTQ files created were de-multiplexed using the bclfastq2 software (Illumina) and the software FastQC (Babraham Bioinformatics ...
-
bioRxiv - Molecular Biology 2023Quote: ... The raw MiniSeq output was de-multiplexed using bcl2fastq2 (Illumina, version 2.20.0) with the flag --barcode-mismatches 0 ...
-
bioRxiv - Evolutionary Biology 2023Quote: ... Barcoded reads were de-multiplexed using the CASAVA pipeline 1.8 (Illumina, Inc.). The obtained raw sequence reads (0.5–4 million per individual ...
-
bioRxiv - Pharmacology and Toxicology 2024Quote: ... and de-multiplexing were performed using the BaseSpace cloud service by Illumina (https://basespace.illumina.com/home/index ...
-
bioRxiv - Genomics 2020Quote: ... De-multiplexing of RNA-Seq reads was conducted using bcl2fastq v.2 (Illumina). Both DNA-Seq and RNA-Seq reads were submitted to FastQC 51 for quality validation.
-
bioRxiv - Genomics 2021Quote: ... De-multiplexed sequencing reads were generated using Illumina bcl2fastq (released version 2.20.0.422, Illumina), allowing no mismatches in the index read ...
-
bioRxiv - Molecular Biology 2020Quote: The raw data were base-called and de-multiplexed using CASAVA 1.8.2 (Illumina) before alignment to hg38 with STAR version 2.4.1 ...
-
bioRxiv - Microbiology 2019Quote: ... De-multiplexing and FastQC generation was performed with default settings using BaseSpace (Illumina). Bacteriophage genomes were assembled using our in-house genomic pipeline and annotated using RAST-tk (38) ...
-
bioRxiv - Cancer Biology 2023Quote: ... De-multiplexed Fastq files were generated using BCL Convert Conversion Software v4.0 (Illumina). Snakemake[9] was used to manage the bioinformatics workflow and ensure reproducibility.
-
bioRxiv - Genomics 2023Quote: ... a set of recently de novo-assembled libraries (Illumina NovaSeq 150 bp PE), from needle tissue of six individuals from a single half-sib family from Shadow Lake 39 ...
-
bioRxiv - Bioengineering 2019Quote: ... Fastq files were generated and de-multiplexed with the bcl2fastq v2.20 Conversion Software (Illumina). Library quality checking ...
-
bioRxiv - Immunology 2020Quote: ... Raw data was de-multiplexed and FASTQ files generated using bcl2fastq software (Illumina inc.). FASTQ data were checked using the FastQC tool (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/) ...
-
bioRxiv - Cell Biology 2021Quote: ... Basecalling and de-multiplexing of indexed reads was performed by CASAVA version 1.8.2 (Illumina. Sequences were trimmed to remove Illumina adapter sequences using Cutadapt version 1.2.1 ...