Labshake search
Citations for Illumina :
1 - 50 of 4905 citations for BN80933 CAS 214348 10 4 98% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2021Quote: ... (28+98) (Illumina). For the Tbx1LacZ/+Crkl+/- dataset ...
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bioRxiv - Genomics 2024Quote: ... Genotypes were called for SNPs matched to dbSNP v151 51 and for which valid calls were made in >98% of participants using GenomeStudio v2.0 (Illumina, San Diego, CA). Additional SNPs were imputed using the IMPUTE2 software suite G352 and the 1000 Genomes Phase 3 reference panel53 ...
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bioRxiv - Cancer Biology 2024Quote: ... and 26 + 98 bp paired-end sequencing was performed using NovaSeq 6000 platform (Illumina).
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bioRxiv - Genomics 2022Quote: ... along with 10% PhiX v3 library (Illumina; San Diego, CA), were pooled and clustered on a Illumina NovaSeq 6000 S2 flow cell followed by 150-bp paired-end sequencing.
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bioRxiv - Genomics 2022Quote: ... along with 10% PhiX v3 library (Illumina; San Diego, CA), were pooled and clustered on a Illumina NovaSeq 6000 S2 flow cell followed by 150-bp paired-end sequencing.
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bioRxiv - Microbiology 2023Quote: ... along with 10% PhiX v3 library (Illumina; San Diego, CA), were pooled and clustered on a Illumina NovaSeq 6000 S2 flow cell followed by 150-bp paired-end sequencing.
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bioRxiv - Neuroscience 2020Quote: ... Libraries were pooled and sequenced paired end (R1:26, R2:98 cycles) on a NextSeq 550 (Illumina) at 200 million reads per library.
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bioRxiv - Immunology 2021Quote: ... and duplicate compression was performed using the Cell Ranger software package (10× Genomics, CA, v2.1.0) and bcl2fastq2 (Illumina, CA, v2.20) according to the manufacturer’s recommendations ...
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bioRxiv - Microbiology 2023Quote: ... a 4 nM library was sequenced on the Illumina Nextseq500 platform (Illumina, San Diego, CA) at the Radboudumc sequencing facility ...
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bioRxiv - Immunology 2024Quote: ... The 10nM library was denatured and further diluted before loading on a NovaSeq 6000 sequencing platform (v.1.5 chemistry, 28/98 bp paired-end, Illumina) at Novogene (Cambridge ...
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bioRxiv - Microbiology 2022Quote: ... and diluted to 4 nM for sequencing on an Illumina MiSeq (Illumina, San Diego, CA, USA). A 500 cycle MiSeq Reagent kit v2 (Illumina ...
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bioRxiv - Genomics 2021Quote: ... for 4000 cells was performed according to manufacturer’s instructions and the libraries were paired-end sequenced (R1:27, i7-index:8, R2:98) on HiSeq 4000 (Illumina). Preprocessing of scRNA-seq data ...
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bioRxiv - Genomics 2020Quote: ... The library was sequenced on 4 lanes of an Illumina HiSeq 1500 (Illumina Inc.; San Diego, CA), generating 450,132,548 reads which were subsequently trimmed to remove adapters and filtered for length and quality using FASTX-Toolkit v0.0.14 (available from http://hannonlab.cshl.edu/fastx_toolkit/) ...
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bioRxiv - Genetics 2023Quote: ... A 10% spike-in of PhiX control V3 (#FC-110-3001; Illumina, San Diego, CA) was added to these amplicons ...
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bioRxiv - Molecular Biology 2021Quote: ... before being diluted to approximately 4 nM for loading onto an Illumina MiSeq (Illumina, San Diego, CA, USA). An Illumina 500 cycle MiSeq Reagent Kit v2 (Illumina ...
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bioRxiv - Genomics 2020Quote: ... and 4 samples were combined into RNA-seq runs on the Illumina MiSeq platform (Illumina, San Diego, CA).
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bioRxiv - Genomics 2021Quote: ... The final libraries at the concentration of 4 nM were sequenced on NextSeq 500 platform (Illumina, CA, USA) using 75 bp paired-end sequencing ...
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bioRxiv - Microbiology 2023Quote: ... Resulting libraries were sequenced as 28/10/10/50 base reads on the NovaSeq instrument using the S2 Reagent kit in paired-end mode (Illumina, San Diego, CA). Fastq files were processed with Spaceranger-1.4.2 pipeline ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were pooled into a 4 nM solution and sequenced on the Illumina MiSeq platform (Illumina; San Diego; CA) with a target sequencing yield of 500MB-1GB per virome.
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bioRxiv - Developmental Biology 2024Quote: ... Transposition was performed using the Fast-ATAC protocol (98) with the following changes: 2 µl of Tn5 transposase (TDE1 from Illumina FC-121-1030) was used in the transposition reaction and the reactions were incubated at 37 °C in a shaking water bath for 35 minutes ...
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bioRxiv - Genomics 2021Quote: ... Nuclear isolation of 5×10^4 cells was followed by treatment with Nextera Tn5 enzyme (Illumina, 20034198) for 45 minutes at 37°C ...
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bioRxiv - Genomics 2021Quote: ... 0.05 μL 10% v/v Tween and 2.5 μL TDE1 enzyme (Illumina, San Diego CA, Catalog #20034198). Tagmented DNA was purified with Zymo DNA clean & concentrator-5 kit (Zymo Research #D4013) ...
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bioRxiv - Microbiology 2022Quote: ... Library pools (8pM) were spiked with 10% PhiX Control v3 (8pM) (Illumina Inc., San Diego, CA, USA). The 355 libraries were sequenced with additional libraries from a larger study ...
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bioRxiv - Cancer Biology 2024Quote: ... and 10 million paired-end reads per sample were detected on a NovaSEQ6000 (Illumina, San Diego, CA). Data were processed and analyzed according to the detailed description provided by Han A ...
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bioRxiv - Zoology 2020Quote: ... or 70 bp (Exp#4) RNA sequencing (RNAseq) was performed on Illumina HiSeq 2000 platform (Illumina, Inc., San Diego, CA, USA) from libraries construed as has been described in previous report (Zhang et al. ...
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V3-V4 regions were amplified (4) followed by addition of Illumina sequencing barcoded adaptors (Illumina, CA, USA.). The libraries were normalized and pooled for multiplex sequencing using the Illumina MiSeq v3 600 cycles cartridge (Illumina ...
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bioRxiv - Immunology 2024Quote: ... One library consisting of a total of 4 samples were pooled and sequenced on the NextSeq 2000 (Illumina, San Diego, CA) using a P3 100 cycle kit (Illumina) ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries were diluted from 26.2 nM (HBA1) and 33.4 nM (HBA2) to a concentration of 4 nM and pooled for sequencing on a MiSeq (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2020Quote: ... DNA (≥10 μg) was prepared for paired-end genomic library sequencing using a kit from Illumina (San Diego, CA). Exomes were enriched using the Agilent SureSelect kit ...
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bioRxiv - Immunology 2021Quote: Paired-end RNA-Sequencing was performed on two independent biological replicates of 10 or 12 pooled 4-dpf larval zebrafish per genotypic group (nlrc3l mutants versus their siblings) by Illumina HiSeq 2×100 basepairs ...
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bioRxiv - Genomics 2022Quote: ... We centrifuged at 500 x g for 10 minutes at 4°C and resuspended cells in the transposition reaction mix (25 µL 2X TD buffer (Illumina), 2.5 µL TDE1 Tn5 transposase (Illumina) ...
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bioRxiv - Neuroscience 2024Quote: ... were pelleted at 500 g for 10 minutes at 4°C in a fixed angle centrifuge and resuspended in 50 μL transposition buffer (prepared from Illumina kit components TD buffer and 100 nM transposase [Illumina] ...
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bioRxiv - Neuroscience 2024Quote: ... were pelleted at 500 g for 10 minutes at 4°C in a fixed angle centrifuge and resuspended in 50 μL transposition buffer (prepared from Illumina kit components TD buffer and 100 nM transposase (Illumina) ...
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bioRxiv - Microbiology 2022Quote: ... for amplicon sequencing of the V3-4 hypervariable region of the 16S rRNA gene (position 341-806) on a MiSeq desktop sequencing platform (Illumina, San Diego, CA) operated under paired-end mode ...
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bioRxiv - Microbiology 2022Quote: ... for amplicon sequencing of the V3-4 hypervariable region of the 16S rRNA gene (position 341-806) on a MiSeq desktop sequencing platform (Illumina, San Diego, CA) operated under paired-end mode ...
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bioRxiv - Genetics 2023Quote: ... and 4 μl of bisulfite-converted DNA was measured on the Illumina HumanMethylation450 array using the manufacturer’s protocol (Illumina, San Diego, CA, USA). Preprocessing and normalization of the data were done using DNAmArray workflow previously developed by our group (https://molepi.github.io/DNAmArray_workflow/) ...
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bioRxiv - Neuroscience 2022Quote: ... Nuclei were pelleted (500xg, 10 min, 4 °C) and tagmented with the Nextera DNA Library Prep Kit (Illumina, FC-121-1030) for 1 h at 37 °C ...
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bioRxiv - Genomics 2022Quote: ... pH 7.4, 5 mM MgCl2, 10% dimethyl formamide, 0.33x PBS, 0.01% digitonin, 0.1% Tween-20, 100 nM Illumina Tn5 Transposase (Illumina, 20034197)) ...
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bioRxiv - Developmental Biology 2023Quote: ... 4-10 ng of the full-length cDNA was used as input for preparing Nextera XT (Illumina, cat. # FC-131-1024) libraries following the manufacturer’s recommendations ...
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bioRxiv - Microbiology 2021Quote: ... Samples were pooled for RNAsequencing of 4 nM of total cDNA and sequencing was performed using a NextSeq 500 Instrument (Illumina Inc San Diego, CA).
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bioRxiv - Evolutionary Biology 2023Quote: ... The library was pooled with other samples at equimolar concentrations and sequenced at 4 nM as single lanes on Illumina NovaSeq 6000 S4 platform (2×150; Illumina Inc., San Diego, CA). The library for long-read data was prepared using the Nanopore ligation kit ...
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bioRxiv - Cell Biology 2020Quote: ... Libraries were then indexed and PCR amplified (10 cycles) and sequenced on Illumina HiSeq 2500 sequencing platform following the manufacture’s protocols (Illumina, Hayward CA.).Sequence reads were aligned to GRCh37-lite using Burrows-Wheeler Aligner (BWA ...
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bioRxiv - Cancer Biology 2022Quote: ... and sequenced on a total of 10 Hiseq 2500 lanes using the 125bp paired-end sequencing method (Illumina, San Diego, CA). Both reads of each sample were trimmed for adapters and low-quality bases using Trimmomatic software and aligned with reference human hg19 genome and ensemble v70 transcripts using Tophat software as stranded libraries ...
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bioRxiv - Molecular Biology 2024Quote: ... Libraries were then indexed and PCR amplified (10 cycles) and sequenced on Illumina HiSeq 2500 sequencing platform following the manufacture’s protocols (Illumina, Hayward CA).
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bioRxiv - Microbiology 2023Quote: ... Library preparation was performed using the Illumina DNA Prep Kit and IDT 10 bp UDI indices (Illumina, San Diego, CA, USA), hybrid whole genome sequencing was carried out on an Illumina NextSeq 2000 (2 × 151 bp reads ...
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bioRxiv - Microbiology 2024Quote: ... CA on the NovaSeq 6000® (Illumina, San Diego, CA) platform.
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were prepared according to the standard protocol recommended by Illumina (Illumina, CA, USA). Index PCR was used to add the unique dual indexes to the sequences ...
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bioRxiv - Genomics 2024Quote: ... The 16S rRNA amplicons of the V3-V4 regions were generated as described in the 16S Metagenomics Sequencing Library Preparation user’s guide from Illumina (Illumina, CA, USA). All reactions were amplified under the following conditions ...
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bioRxiv - Plant Biology 2021Quote: ... were randomly pooled (4 samples per pool) and grouped using the TruSeq Paired-End Reads Cluster Kit on the cBot platform (Illumina Inc., San Diego, CA, USA). The cDNA libraries were posteriorly sequenced on the Illumina Genome platform Analyzer IIx with a TruSeq kit with 36 cycles (Illumina ...
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bioRxiv - Genomics 2020Quote: ... Five size-fractions were selected ranging from 470 bp to 10 kb to construct sequencing libraries following the manufacturer’s protocols (Illumina, San Diego, CA). The TruSeq DNA Sample Preparation Kit version 2 with no PCR amplification (PCR-free ...