Labshake search
Citations for Illumina :
3851 - 3900 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cancer Biology 2023Quote: ... RIN>6.8) was used for ribonucleotide-depleted long-noncoding RNA sequencing on a NovaSeq 6000 (Illumina, San Diego, CA, USA). Fastq reads were aligned to the human reference genome GRCh38 using STAR (version 2.6.0c ...
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bioRxiv - Microbiology 2024Quote: ... and pooled in equimolar ratios before pre-sequencing on the Illumina MiniSeq platform (Illumina Inc., San Diego, CA, United States) to inform library re-pooling for optimal equimolarity across samples ...
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bioRxiv - Genomics 2024Quote: ... Methylation was measured from 160ng of bisulfite-converted DNA using the Illumina EPIC Beadchip (Illumina Inc, San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: ... isolated RNA samples were deprived of ribosomal RNA with Illumina Ribo-Zero Plus rRNA Depletion Kit (Illumina, San Diego, CA) and processed into a cDNA library for Illumina with the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and high-throughput sequencing was performed by Novogene (Hong Kong) using the Illumina HiSeq 2500 platform (Illumina; San Diego, CA) with 150-bp paired reads ...
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bioRxiv - Genetics 2024Quote: ... MGX-Montpellier GenomiX has performed the sequencing on an Illumina® NovaseqTM 181 6000 (Illumina Inc., San Diego, CA, USA). The detailed protocol was described by Zunino et al ...
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bioRxiv - Plant Biology 2024Quote: ... Sequencing was carried out with 50 bp single-end reads on an Illumina HiSeq 2500 (Illumina, San Diego, CA, USA). CleaveLand 3.0 and TargetFinder 50 were employed to identify potential sliced targets of known miRNAs.
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bioRxiv - Neuroscience 2024Quote: ... Libraries that had passed quality control were then sequenced on an Illumina NovaSeq 6000 platform (Illumina, San Diego, CA, USA). Sequencing parameters were set to generate paired-end reads with the following specifications ...
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bioRxiv - Neuroscience 2024Quote: ... The final libraries were pooled in equimolar concentration for sequencing in NextSeq 550 Sequencing System (Illumina, San Diego, CA, USA) through NextSeq 500/550 v2.5 Kit (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... The first PCR was performed with the primer set SYM_VAR_5.8S2/SYM_VAR_REV (Hume et al., 2018) with an overhang adapter sequence for the MiSeq platform (Illumina, Los Angeles, CA, USA). Each 20 µl PCR included the following components ...
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bioRxiv - Neuroscience 2024Quote: ... Sublibraries were pooled at an equimolar ratio and sequenced on an Illumina NovaSeq 6000 platform (Illumina, Inc. San Diego, CA) with a sequencing configuration of 74-6-0-86 to generate ∼50k reads per cell ...
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bioRxiv - Microbiology 2024Quote: ... DNA libraries for sequencing were prepared using the Illumina DNA Seq protocol (formerly, Nextera Flex; Illumina Inc., San Diego CA). Samples were pooled in groups of 96 and then checked on a MiSeq Nano (Illumina Inc. ...
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bioRxiv - Immunology 2024Quote: ... barcoded cDNA was amplified by PCR to generate enough mass for library construction (Nextera® PCR primers) (Illumina, CA, USA). Sequencing of the libraries was performed on HiSeq2500 (Illumina ...
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bioRxiv - Genomics 2024Quote: ... To deplete the host rRNA we used the Illumina Ribo-Zero Plus rRNA Depletion Kit (Illumina, San Diego, CA, USA). The kit employs capture oligonucleotides and hybridization techniques to eliminate rRNA ...
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bioRxiv - Immunology 2024Quote: ... Targeted sequencing was performed on FFPE tumor samples from all patients using the NovaSeq platform (Illumina, San Diego, CA, USA). The library for sequencing was constructed using the lymphoma-associated gene mutation detection kit provided by Nanjing Shihejiyin Technology (Nanjing ...
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bioRxiv - Molecular Biology 2024Quote: RNA isolated from cells after treatments was sent to Novogene (Sacramento, CA) for polyA selection and library preparation followed by Illumina sequencing (paired end ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The library was then sequenced to approximately 50x coverage on an Illumina HiSeq 4000 instrument (Illumina, San Diego, CA, USA), using 150 base-length read chemistry in a paired-end mode.
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bioRxiv - Genetics 2024Quote: ... We prepared the PCR amplicons for sequencing using the Nextera XT DNA Library Preparation Kit (Illumina, San Diego, CA, USA) and sequenced them on a MiSeq instrument (Illumina ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The library was sequenced on a paired-end mode with an Illumina NovaSeq 6000 instrument (Illumina, San Diego, CA, USA) using a 151 base-length read chemistry.
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bioRxiv - Microbiology 2024Quote: Identity of virus stocks was confirmed by next-generation sequencing using a MiniSeq platform (Illumina, Inc.; San Diego, CA, USA). In brief ...
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bioRxiv - Immunology 2024Quote: Libraries for each sample were sequenced on a NextSeq550 75 Cycle High Output sequencing kit (Illumina Inc., Sunnyvale, CA, USA). For each library ...
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ATP-dependent citrate lyase Drives Left Ventricular Dysfunction by Metabolic Remodeling of the HeartbioRxiv - Molecular Biology 2024Quote: ... Raw reads from the sequencer were demultiplexed and converted to fastq format using bcl2fastq v2.19.1.403 (Illumina, Inc., San Diego, CA), optioned to allow for 0 mismatches in the barcodes.
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ATP-dependent citrate lyase Drives Left Ventricular Dysfunction by Metabolic Remodeling of the HeartbioRxiv - Molecular Biology 2024Quote: RNA-sequencing libraries were prepared using the Illumina TruSeq Stranded mRNA Sample Preparation Kit (Cat#20020594, Illumina, San Diego, CA). RNA was extracted from isolated cardiomyocytes using the QIAGEN RNeasy Fibrous Tissue Mini Kit (Cat#74704 ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were prepared using the Nextera DNA Flex Library Prep as recommended by the manufacturer (Illumina, San Diego, CA, USA), then sequenced using Illumina technology to generate 2×150 bp paired-end reads and >30x coverage ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing was conducted across two sequencing runs on seven plates using an Illumina MiSeq platform (Illumina, San Diego, CA, USA). The combined 16S library per run was subjected to paired-end sequencing on the Illumina® MiSeq™ platform ...
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bioRxiv - Zoology 2024Quote: ... DNA fragments were used to generate genomic libraries using the TruSeq DNA PCR-free library kit (Illumina, San Diego, CA), which were quality checked on an Agilent 4200 Tapestation and quantitated using a Lightcycler qPCR assay (Roche Life Science ...
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bioRxiv - Plant Biology 2024Quote: ... The library constructions were generated using TruSeq Stranded mRNA Library Prep Kit (RS-122-2101; Illumina, San Diego, CA USA) and assessed to Agilent Bioanalyzer 2100 system using DNA High Sensitivity Chips for qualification ...
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bioRxiv - Pharmacology and Toxicology 2024Quote: The reverse transcription products (5 μL) were mixed with Eco™ Real-Time PCR System (Illumina, San Diego, CA, USA) and primers ...
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bioRxiv - Genomics 2024Quote: ... cDNA was prepared using a modified protocol based on the Illumina Truseq RNA Sample Preparation Kit (Illumina, San Diego, CA) and the published methods for strand-specific RNA-Seq [66 ...
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bioRxiv - Genomics 2024Quote: ... Subsequent methylation analysis was performed on an Illumina (San Diego, CA, USA) iScan platform using the Infinium MethylationEPIC BeadChipv1 according to standard protocols provided by Illumina. GenomeStudio software version 2011.1 with Methylation Module version 1.9.0 was used for initial quality control of assay performance and for generation of methylation data export files.
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were normalized and pooled for sequencing on two NovaSeq SP-100 flow cells (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were prepared from 1 ng of genomic DNA using a reduced-volume dual-barcoding Nextera (Illumina, San Diego, CA) protocol as previously described (Erickson et al ...
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bioRxiv - Systems Biology 2024Quote: ... and libraries were prepared using Nextetera XT DNA preparation kit (cat. no. FC-131-1024; Illumina, Inc., San Diego, CA), followed by multiplexed paired-end sequencing (read length of 150 bp) ...
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bioRxiv - Systems Biology 2024Quote: ... rRNA depletion was performed with the EPiCenter Ribo-Zero Magnetic Gold Kit (Yeast) RevA kit (Illumina Inc, San Diego, CA). RNA-seq libraries were prepared using a TruSeq Stranded Total RNA kit (Illumina) ...
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bioRxiv - Cell Biology 2024Quote: ... The RNA-seq transcriptome library was constructed via a TruSeq™ RNA Sample Preparation Kit (Illumina, San Diego, CA, USA), and the paired-end RNA-seq sequencing library was sequenced on an Illumina HiSeq Xten/NovaSeq 6000 sequencer by Shanghai Majorbio Biopharm Technology Co. ...
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bioRxiv - Evolutionary Biology 2024Quote: ... All sequence data was generated using paired-end sequencing performed on an Illumina HiSeq 2500 platform (Illumina, San Diego, CA) at Tata Institute of Genetics and Society.
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bioRxiv - Evolutionary Biology 2024Quote: ... DNA libraries were sequenced using Illumina NovaSeq 6000 technology (short reads, paired-end, 150 bp; Illumina Inc., San Diego, CA) with a target coverage of 50X ...
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bioRxiv - Developmental Biology 2024Quote: ... Bisulfite-treated DNA (1 µg) was pipetted onto an Illumina Infinium Mouse Methylation-12v1-0 BeadChip (Illumina, CA, United States) that was run on an Illumina iScan System (Illumina ...
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bioRxiv - Plant Biology 2020Quote: 126 cDNA libraries were prepared using the Illumina TruSeq RNA Sample Preparation Kit v.2 (Illumina, USA) from isolated RNA ...
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bioRxiv - Plant Biology 2020Quote: ... where they were sequenced on a MiSeq instrument in paired-end 2 × 300 bp mode (Illumina, USA). The raw sequencing data was deposited at the European Nucleotide Archive (http://www.ebi.ac.uk/ena) ...
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bioRxiv - Developmental Biology 2021Quote: ... Paired-end 2 x 75 bp NSQ 500/550 Hi Output KT v2.5 −75 CYS (Illumina, 20024906) was performed for RNA-seq libraries on an Illumina Nextseq 500 instrument ...
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bioRxiv - Genetics 2021Quote: ... Libraries were each sequenced on one full 2 × 150 bp PE (paired end) HiSeq 4000 lane (Illumina).
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bioRxiv - Genomics 2021Quote: ... The pooled libraries were sequenced in an Illumina HiSeq4000 instrument (2 x 150 bp PE reads) (Illumina). A PhiX control library was applied to the sequencing run as a base balanced sequence for the calibration of the instrument so that each base type is captured during the entire run ...
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bioRxiv - Molecular Biology 2021Quote: Libraries were sequenced using paired end sequencing (2 × 150 bp) on a NovaSeq high-throughput sequencer (Illumina) at the University of Colorado Genomics Core Resource ...
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bioRxiv - Molecular Biology 2020Quote: ... beginning at Elution 2 – Fragment – Prime step immediately preceding cDNA synthesis according to the manufacturer instructions (Illumina) with the following modifications ...
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bioRxiv - Genomics 2020Quote: ... using the Illumina MiSeq platform (2×1300 paired-end; MiSeq Reagent Kit v3 supporting 600-cycles, Illumina). The resulting sequence reads were filtered ...
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bioRxiv - Cell Biology 2020Quote: ... The libraries were sequenced in multiplex (n=2 per sequencing run) on the NextSeq 500 sequencer (Illumina) to produce between 200 and 250 million reads per library.
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Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breedingbioRxiv - Genomics 2020Quote: ... Sequencing with 2×150bp reads was performed at the Earlham Institute on a NovaSeq 6000 instrument (Illumina) with 16 promoter capture libraries on one lane and 16 genic capture libraries on another lane.
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bioRxiv - Cancer Biology 2021Quote: ... They were sequenced to a targeted depth of 40M 2×100bp reads on a NovaSeq 6000 (Illumina). Differential expression analysis was performed by reading kallisto counts files into R using the R packages tximport (v.1.10.1 ...
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bioRxiv - Cancer Biology 2020Quote: ... pH 7.6] and Transposition buffer [2 µl of Illumina adapters-bearing Tn5 transposase (FC-121-1030, Illumina), 0.02% digitonin and 0.2% Tween-20 in PBS] ...