Labshake search
Citations for Illumina :
251 - 300 of 5074 citations for AS 1517499 CAS 919486 40 1 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cancer Biology 2022Quote: The scRNA-seq libraries were generated from cell suspensions using Chromium Single Cell 3′ Library & Gel Bead Kit v2 or Chromium Next GEM Single cell Immune Profiling 5’ v1.1 (for P8640) (10X Genomics, Pleasanton, CA, USA) as per manufacturer’s protocol and sequenced on Illumina sequencers (Illumina, San Diego, CA). All libraries from a patient were prepared in the same experimental batch ...
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bioRxiv - Immunology 2024Quote: ... Sample demultiplexing, alignment, and barcode/UMI filtering was performed using the Cell Ranger software package (10x Genomics, CA) and bcl2fastq (Illumina, CA) using the commands mkfastq and count ...
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bioRxiv - Physiology 2024Quote: ... (Sacramento, CA, USA) for library preparation (polyA, non-strand specific) and sequencing (20 million PE150 reads, NovaSeq, Illumina, San Diego, CA). RNA-seq data were analyzed in R (Ver ...
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bioRxiv - Plant Biology 2021Quote: ... 10 ng of template DNA and index primer 1 (N7xx) and index primer 2 (N5xx) of Nextera XT Index Kit v2 Set A (Illumina, San Diego, CA, USA) according to the manufacturer’s instruction ...
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bioRxiv - Microbiology 2020Quote: ... of the 16S rRNA gene and the internal transcribed spacer (ITS) 1 rDNA variable region on the Illumina MiSeq platform (Illumina, San Diego, CA, USA), as detailed previously (Phoma et al. ...
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bioRxiv - Cancer Biology 2020Quote: ... RNA (1 μg) was then converted into cDNA libraries according to the Illumina TruSeq Stranded mRNA Sample Preparation Guide (Illumina, San Diego, CA, USA) following manufacturer’s instructions ...
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bioRxiv - Plant Biology 2021Quote: ... Pooled libraries were diluted to 1.8 pM for 1×86 bp single-end sequencing with 75-cycle High Output v2 Kit on the NextSeq 550 Sequencing System (Illumina, San Diego, CA, USA) according to the manufacturer’s protocol ...
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bioRxiv - Genetics 2022Quote: ... Pooled RPFs were diluted to 100 ng/uL and 1 ug was used as input for rRNA depletion using RiboZero Gold (part of Illumina 20020598, San Diego, CA) per manufacturer protocol ...
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bioRxiv - Physiology 2020Quote: ... RNA-seq libraries were sequenced using paired-end reads (50-nt read 1 and 25-nt read 2) on a NextSeq 500 instrument (Illumina, San Diego, CA, USA). Obtained reads were mapped to the mouse GRCm38.p6 genome using STAR (version 2.7.3a) ...
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bioRxiv - Neuroscience 2021Quote: ... Libraries were pooled and loaded for clustering on 1 lane of a Single-read Illumina Flow cell (for an average of 50 million of reads per library) (Illumina, San Diego, CA, USA). Reads of 100 bases were generated using the TruSeq SBS chemistry on an Illumina HiSeq 4000 sequencer (Illumina ...
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bioRxiv - Genomics 2020Quote: ... We spiked in 1% PhiX control (PhiX Control v3) in a 12 pM library and sequenced on an Illumina MiSeq platform (Illumina, San Diego, CA, USA) using a MiSeq Nano Reagent Kit v2 (500 cycles).
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were pooled and sequenced single-end (1×75) on an Illumina NextSeq 500 using the High output V2 kit (Illumina Inc., San Diego CA). The RNA-seq samples were sequenced at a sequencing depth of 11-16 million reads.
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bioRxiv - Cell Biology 2023Quote: ... Libraries were prepared from 1 µg of input DNA using a TruSeq DNA Sample Prep Kit according to the manufacturer’s instructions (Illumina, Inc., San Diego, CA, USA). The sheared DNA fragments underwent end-repair ...
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bioRxiv - Microbiology 2023Quote: ... a sequencing library was generated from 1 ng of the resulting SAG DNA with the NexteraXT library preparation kit (Illumina, San Diego, CA, USA) and the library was then sequenced on an Illumina MiSeq instrument (2×300 bp) ...
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bioRxiv - Bioengineering 2023Quote: ... Sequencing was performed in paired-end mode with HighOutput flow cell (read 1: 28 cycles and read 2: 90 cycles) and a NextSeq 550 sequencer (Illumina, San Diego, CA, USA) at the Transcriptome Core Facility of the Institute in Regenerative Medicine and Biotherapy ...
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were pooled and sequenced single-end (1×75) on an Illumina NextSeq 500 using the High output V2 kit (Illumina Inc., San Diego CA) at a sequencing depth of 23-31 million reads ...
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bioRxiv - Genomics 2022Quote: ... The concentration of amplified cDNA was measured with Qubit and 1 ng was used as input for Nextera XT (Illumina, San Diego, CA, USA) library preparation using New P5 SMART PCR oligo and Nextera index oligos ...
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bioRxiv - Genomics 2022Quote: ... 2 μg of Rohu-1 genomic DNA was used with an Illumina TruSeq DNA PCR-free Library Prep Kit (Illumina, San Diego, CA, USA) to create an Illumina sequencing library ...
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bioRxiv - Molecular Biology 2022Quote: ... Libraries were prepared from purified RNA (∼1 μg) using Illumina TruSeq standard mRNA library preparation kit as per manufacturer protocol (Illumina Inc., San Diego, CA). Briefly ...
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bioRxiv - Plant Biology 2023Quote: ... 1 μg total RNA was used for preparation of cDNA libraries with the TruSeq Small RNA Library Preparation Kit (Illumina, San Diego, CA, USA). Libraries were sequenced as 50 bp paired-end reads on an Illumina Genome Analyzer ...
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bioRxiv - Plant Biology 2024Quote: ... RNA-seq libraries were prepared from 1 μg of total RNA using the Illumina TruSeq RNA Library Prep Kit (Illumina, San Diego, CA, USA) and sequenced on an Illumina NovaSeq 6000 platform (2 × 150 bp ...
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bioRxiv - Molecular Biology 2024Quote: ... Library preparation for sequencing experiments was performed for Figure 1 using the Illumina TruSeq ChIP-Seq Library Preparation kit (Illumina, San Diego, CA, USA) and for Figure 2 using the NEBNext Ultra II DNA Library Prep Kit for Illumina (New England Biolabs ...
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bioRxiv - Cell Biology 2020Quote: ... Single cell RNA-seq libraries were prepared according to the manufacturer’s instructions (10X Genomics, Pleasanton, CA) and sequenced on the Illumina HiSeq 4000 platform (Illumina, San Diego, CA). The sequencing data were processed with the Cellranger and Seurat (v3 [13] ...
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bioRxiv - Genomics 2022Quote: ... we followed the strategies described by Bishara et al.19 for library preparation on a 10x Chromium System (10x Genomics, CA, USA) and performed sequencing on an Illumina HiSeq 2500 (Illumina, CA, USA). For long-read sequencing ...
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bioRxiv - Evolutionary Biology 2024Quote: ... We sequenced the final pool in one lane at Novogene (Sacramento, CA, U.S.A.) on Illumina HiSeq 150 cycle Paired-End Sequencing v4 runs (Illumina, San Diego, CA, U.S.A.), along with other enriched libraries for unrelated projects ...
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bioRxiv - Cancer Biology 2022Quote: ... using MiSeq V2 300 cycle reagent kit after the amplified library was purified with AMPure XP beads (Beckman Coulter, CA, USA) (Illumina, CA, USA) (10).
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bioRxiv - Evolutionary Biology 2024Quote: ... We sequenced the final pool at Novogene (Sacramento, CA, U.S.A.) on Illumina HiSeq 150 cycle Paired-End Sequencing v4 runs (Illumina, San Diego, CA, U.S.A.), along with other enriched libraries for unrelated projects ...
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bioRxiv - Genomics 2023Quote: ... after RNase I digestion (50 units nuclease per 40 µg of RNA; the nuclease was included in TruSeq Mammalian Ribo Profile Kit, Illumina, RPHMR12126), adding 15 µl of SUPERase-IN (Invitrogen ...
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bioRxiv - Genomics 2023Quote: The 200 µL of the lysates described above were treated with RNase I (50 units nuclease per 40 µg of RNA; the nuclease was included in TruSeq Mammalian Ribo Profile Kit, Illumina, RPHMR12126) for 1 hour at room temperature with gentle mixing ...
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bioRxiv - Genomics 2024Quote: ... and that HT-SELEX ligands differ from each other by containing a well-specific variable region that flanks the randomized 40 bases indicated in the name of the experiments (e.g. AA40NCCAGTG contains 40-bases flanked by AA and CCAGTG sequences and Illumina adapter sequences). All primers and library preparation schemes are given in Table S1.
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bioRxiv - Immunology 2021Quote: ... Sequencing was completed on NovaSeq (Illumina, San Diego, CA) in the Stanford Genome Sequencing Service Center ...
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bioRxiv - Synthetic Biology 2022Quote: ... The library was loaded on a MiSeq (Illumina, CA) and sequenced for 250 cycles from each end of the library fragments with a Nano V2 500 cycles kit (Illumina) ...
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bioRxiv - Immunology 2021Quote: ... according to the manufacturer’s instructions (Illumina, San Diego, CA). The read counts from the MiSeq nano run were used to create a new pool of each library containing equimolar amounts of each sample for the final instrument runs ...
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bioRxiv - Genomics 2020Quote: ... run on an Illumina iScan System (Illumina, CA, USA) using the manufacturers’ standard protocol ...
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bioRxiv - Genomics 2020Quote: ... Analysis was completed using KaryoStudio (Illumina, San Diego, CA) and Nexus Copy Number (BioDiscovery ...
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bioRxiv - Evolutionary Biology 2021Quote: ... The Illumina MiSeq instrument (Illumina, San Diego, CA, USA) was used to carry out 150-bp ...
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bioRxiv - Genomics 2021Quote: ... following manufacturer’s instructions (Illumina Inc., San Diego, CA, USA). All soybean accessions were sequenced and paired-end 150 bp reads were produced using an Illumina NovaSeq 6000 sequencer at the BerryGenomics Company (http://www.berrygenomics.com/ Beijing ...
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bioRxiv - Neuroscience 2020Quote: ... using the HiSeq 2500 platform (Illumina, San Diego, CA). Differential expression (DE) ...
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bioRxiv - Cancer Biology 2020Quote: ... again per manufacturer’s directions (Illumina, San Diego, CA, USA). All microarrays were performed in triplicate to ensure appropriate replicates for the experiment.
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bioRxiv - Neuroscience 2020Quote: ... was undertaken using GenomeStudio (Illumina, San Diego, CA, USA). Manual reclustering for Chr 21 SNPs was done using GenomeStudio module v1.9.4 polyploidy-genotyping (http://res.illumina.com/documents/products/technotes/technote_genomestudio_polyploid_genotyping.pdf) ...
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bioRxiv - Plant Biology 2021Quote: ... on an Illumina HiSeq2000 (Illumina, San Diego, CA, USA). More than 24 million useable reads were generated for each library (Supplementary Table 1).
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bioRxiv - Plant Biology 2021Quote: ... USA and sequenced on a Miseq (Illumina, CA, USA). Using 2 x 150 bp paired-end reads generated with the Nextera Truseq libraries (Illumina ...
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bioRxiv - Microbiology 2020Quote: ... The Miseq Reagent Kit v3 (Illumina, San Diego, CA), was used to obtain 300 bp reads for paired-end sequencing ...
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bioRxiv - Plant Biology 2021Quote: ... Genome Analyzer GAIIx (Illumina, Inc., San Diego, CA, USA), and Hiseq (Illumina ...
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bioRxiv - Neuroscience 2020Quote: ... and sequenced with NovaSeq 6000 (Illumina, San Diego, CA) with read lengths ...
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bioRxiv - Microbiology 2020Quote: ... An Illumina MiSeq benchtop sequencer (Illumina, San Diego, CA) was used to sequence the two library preparations with v3 sequencing chemistry with 2×250 bp pair-end reads.
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bioRxiv - Microbiology 2020Quote: ... while a SP reagent kit (Illumina, San Diego, CA) was used on the Novaseq platform ...
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bioRxiv - Microbiology 2020Quote: ... A Mid-output reagent kit (Illumina, San Diego, CA) was used to sequence on the Miniseq ...
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bioRxiv - Plant Biology 2021Quote: ... on an Illumina HiSeq2000 (Illumina, San Diego, CA, USA). Over 50 million useable reads were generated for each library (Supplementary Table 1) ...
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bioRxiv - Cancer Biology 2020Quote: ... and sequenced by HiSeq X (Illumina, San Diego, CA) on a 150 bp paired-end run ...