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Citations for Illumina :
151 - 200 of 9848 citations for Mouse Bcl 2 Modifying Factor BMF ELISA Kit since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genetics 2021Quote: ... data was converted from bcl format to FastQ format using bcl2fastq (v 2.19.0, Illumina Inc.) with the following options with-failed-reads ...
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bioRxiv - Neuroscience 2020Quote: ... Sequencing reads were converted from BCL to FASTQ format and demultiplexed using Bcl2fastq2 (Illumina, 2017). The first 5 base calls were then trimmed and low quality reads filtered out using FASTX-Toolkit (Hannon_Lab ...
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bioRxiv - Microbiology 2021Quote: Illumina BCL sequence files were converted to FASTQ format with the bcl2fastq tool (v2.20.0.422, Illumina). gRNA enrichment/depletion analyses were conducted with the MAGeCK package (version 0.5.9.457 ...
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bioRxiv - Immunology 2020Quote: ... Obtained BCL files were converted to FASTQ files with bcl2fastq Conversion Software version v2.20.0.422 (Illumina). Pre-processing of FASTQ inputs ...
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bioRxiv - Molecular Biology 2022Quote: ... Bcl-files were then converted and demultiplexed to fastq using the bcl2fastq program from Illumina.
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Co-stimulatory molecules decide T cell fate through regulations of their invigoration and impairmentbioRxiv - Molecular Biology 2022Quote: ... BCL raw data was converted to FASTQ data and demultiplexed by bcl2fastq Conversion Software (Illumina). Raw reads for individual samples were assessed with the FastQC program to check sequence quality and processed with Trimmomatic to remove adaptor sequences and bases with low quality scores ...
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bioRxiv - Systems Biology 2022Quote: ... BCL files from each library were converted to FASTQ reads using bcl2fastq Conversion Software (Illumina) using the respective sample sheet with the 10x barcodes and TotalSeq antibodies utilized ...
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bioRxiv - Physiology 2022Quote: The resulting base calls (BCL) files were converted to FASTQ files using bcl2fastq tool (Illumina). These raw sequencing reads were processed with the zUMI88 (version 2.5 – default parameters ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and adapter trimming was carried out using bcl-convert (v3.9.3) and bcl2fast (v2.20.0.445) (both are proprietary Illumina software for the conversion of bcl files to basecalls) ...
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bioRxiv - Cancer Biology 2023Quote: ... BCL raw data were converted to FASTQ data and demultiplexed by bcl2fastq Conversion Software (Illumina). Fastq files were mapped against the humen genome (build GRCh38.p13 ...
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bioRxiv - Cell Biology 2023Quote: ... Read count data was converted from BCL to FASTQ filetype using Bcl2fastq conversion software (Illumina).
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bioRxiv - Genomics 2023Quote: ... The “mkfastq” module in CellRanger demultiplexes the raw base call (BCL) files generated by Illumina sequencers into FASTQ files ...
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bioRxiv - Cell Biology 2024Quote: BCL files were converted to FASTQ files using bcl2fastq Conversion Software version v2.20.0.422 (Illumina, US).
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bioRxiv - Cell Biology 2024Quote: ... The reads were demultiplexed into FASTQ files using the BCL Convert Conversion Software (Illumina, v4) and the adapters were trimmed using Cutadapt v2.3 39 ...
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bioRxiv - Neuroscience 2021Quote: ... 2 μg of total RNA were treated with the Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat; Illumina). Depleted RNA was precipitated 1h at −80°C in three volumes of ethanol plus 1 μg of glycogen ...
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bioRxiv - Neuroscience 2020Quote: ... the cellranger mkfastq was used to demultiplex the raw base call (BCL) files obtained from Illumina HiSeq 4000 sequencers into FASTQ files ...
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bioRxiv - Microbiology 2021Quote: ... the CellRanger makefastq command was used to demultiplex raw base call (BCL) files generated by Illumina sequencers into FASTQ files ...
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bioRxiv - Cell Biology 2021Quote: ... Sequence alignment and RNA-Seq analysis: Bcl to fastq conversion was performed using Illumina software (Illumina). Fastq files were aligned against human reference build hg19 provided by the Genome Reference Consortium (GRCh19) ...
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bioRxiv - Immunology 2021Quote: ... Raw BCL files were demultiplexed and converted to sample-specific FASTQ files using bcl2fastq v1.8.4 (Illumina). Residual adapter sequences present in the sequencing reads were removed with Cutadapt version 1.12 ...
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bioRxiv - Neuroscience 2024Quote: ... BCL raw data were converted to FASTQ data and demultiplexed by the bcl2fastq Conversion Software (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... Conversion of BCL (base calls) binary files to FASTQ format is subsequently performed with bcl2fastq2 (Illumina).
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bioRxiv - Molecular Biology 2021Quote: ... Demultiplexing (one mismatch allowed) and BCL-to-Fastq conversion was carried out using bcl2fastq software (v2.17.1.14) (Illumina).
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bioRxiv - Neuroscience 2020Quote: ... The resulting base call files (.bcl) were converted to standard fastq formatted sequence files using Bcl2Fastq (Illumina). Sequencing quality was assessed using FastQC (Babraham Bioinformatics ...
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bioRxiv - Neuroscience 2020Quote: ... The resulting base call files (.bcl) were converted to standard fastq formatted sequence files using Bcl2Fastq (Illumina). Sequencing quality was assessed using FastQC (Babraham Bioinformatics ...
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bioRxiv - Immunology 2020Quote: ... Per-cycle base call (BCL) files were demultiplexed and converted to FASTQ using bcl2fastq v2.19.1.403 from the CASAVA software suite (Illumina). Library preparation and sequencing was carried out at the National Genomics Infrastructure ...
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bioRxiv - Molecular Biology 2020Quote: The raw data BCL sequencing files were converted to fastq file with aid of bcl2fastq software (Illumina). Data quality control was done with FastQC and the amplified copies of DNA sequences in PCR reactions during NGS library preparation were deduplicated according to the molecule tag in the sequences ...
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bioRxiv - Cell Biology 2022Quote: Raw sequencing data were demultiplexed and converted to FASTQ files using the ‘bcl-convert’ command (Illumina, v3.9.3) and aligned to the mm10 reference genome (refdata-cellranger-arc-mm10-2020-A-2.0.0 ...
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bioRxiv - Neuroscience 2023Quote: Sequencing reads were demultiplex and base call (BCL) files were converted into Fastq files using bcl2fastq conversion software (v2.17.1.14, Illumina). Sequence adapters were trimmed and reads shorter than 6 bp were removed from further analyses using Cutadapt (v0.18 ...
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bioRxiv - Immunology 2024Quote: Raw sequencing files binary base call (bcl) files were demultiplexed and converted to Fastq using bcl2fastq (v2.19.0.316) (Illumina). Alignment and barcode counting were performed using cell ranger (v6.0.2 ...
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bioRxiv - Immunology 2024Quote: ... The Cell Ranger mkfastq pipeline was used to demultiplex raw base call (BCL) files generated by Illumina sequencers into FASTQ files ...
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bioRxiv - Cancer Biology 2024Quote: ... Illumina novaSeq base call (BCL) files were transformed into fastq files through bcl2fastq (version v2.20.0.422, Illumina Inc.), and sequence reads were trimmed using bbduk software (bbmap suite 37.31 ...
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bioRxiv - Molecular Biology 2019Quote: ... 2 ug of total RNA were processed for rRNA depletion by Ribozero Gold rRNA Removal kit (Human/Mouse/Rat) (Illumina) following manufacturer’s instructions ...
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bioRxiv - Systems Biology 2021Quote: ... The Bcl was converted to FastQ by bcl2fastq_v2.19.1.403 from CASAVA software suite (Sanger/phred33/Illumina 1.8+ quality scale).
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bioRxiv - Cell Biology 2020Quote: ... Cell Ranger v2.1 was used in order to de-multiplex raw base call (BCL) files generated by Illumina sequencers into FASTQ files ...
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bioRxiv - Microbiology 2022Quote: ... Base-calling was done on the instrument using RTA 3.3.4 and the resulting .bcl files were demultiplexed and converted to FASTQ format with tools provided by Illumina Inc. ...
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bioRxiv - Systems Biology 2022Quote: The base call (BCL) files generated from the Illumina run were converted to FASTQ reads with bcl2fastq (Illumina). Subsequently ...
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bioRxiv - Microbiology 2020Quote: ... Sequencing reads were derived from raw BCL files which were retrieved from the sequencer and called into fastqs by Casava v1.8.3 (Illumina). Then ...
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bioRxiv - Microbiology 2021Quote: ... and the index (barcode) read were generated using the BCL-to-FASTQ file converter bcl2fastq (ver. 2.17.1.14, Illumina, Inc.). Sequencing of the samples was conducted at the University of Colorado Boulder BioFrontiers Next-Gen Sequencing core facility.
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bioRxiv - Systems Biology 2021Quote: ... The Bcl was converted to fastq by bcl2fastq_v2.19.1.403 from CASAVA software suite (Sanger/phred33/Illumina 1.8+ quality scale). The fastq files for mice were then processed as the way that were used in human datasets mentioned above using a standard protocol of Kallisto (Bray et al. ...
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bioRxiv - Cell Biology 2022Quote: ... raw Illumina read BCL Files were converted to fastq files using the bcl2fastq2 software (bcl2Fastq v2.19.1, Illumina, Inc). For scRNA-seq the ...
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bioRxiv - Cancer Biology 2023Quote: Raw sequencing data (bcl. files) were demultiplexed into forward and reverse reads for each sample using bcl2fastq v2.20.0 from Illumina and concatenated across lanes ...
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bioRxiv - Bioengineering 2021Quote: ... The resulting raw sequence data files (.bcl) were converted to the FASTQ format and de-multiplexed with bcl2fastq 2.17 software (Illumina). One mismatch was permitted for index sequence identification ...
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bioRxiv - Developmental Biology 2020Quote: ... we demultiplexed and converted Binary Base Call (BCL) files to FASTQ using bcl2fastq (v2.17.1.14, Illumina, San Diego, CA, USA). We processed FASTQ files through a custom RNA-Seq workflow (77) ...
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bioRxiv - Molecular Biology 2023Quote: ... The fastq files were obtained by demultiplexing the bcl basecall files using the 1.8.4 version bcl2fastq script (Illumina, Inc.). Reads mapping was performed against the reference genome (GRCh38 ...
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bioRxiv - Cell Biology 2020Quote: ... The BCL files that were generated from the sequencing were demultiplexed and converted to FastQ files using BCL2FASTQ software from Illumina. All raw and processed sequencing data have been submitted to the NCBI Genome Expression Omnibus (GEO ...
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bioRxiv - Immunology 2021Quote: ... Raw sequence data were obtained in Bcl-files and converted into fastq text format using the bcl2fastq program from Illumina. Validation of RNAseq was performed using qRT-PCR as described below.
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bioRxiv - Developmental Biology 2022Quote: ... the “mkfastq” module of Cell Ranger was used to produce FASTQ files with raw base call (BCL) files as input generated by Illumina sequencer alignment.
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bioRxiv - Molecular Biology 2022Quote: ... Raw sequence data were obtained in Bcl-files and converted into fastq text format using the bcl2fastq program from Illumina. Mapping of transcripts was done using Genome UCSC annotation set for hg38 human genome assembly ...
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bioRxiv - Physiology 2022Quote: The base call (BCL) files generated from the raw sequencing data were converted to FASTQ reads using bcl2fastq tool (Illumina). The FASTQ reads were mapped to human reference dataset GRCh38 (build 2020-A ...
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bioRxiv - Bioengineering 2024Quote: ... The run generated .bcl files which were converted into adaptor-trimmed demultiplexed fastq files using bcl2fastq v2.20 Conversion Software (Illumina, CA).