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Citations for Illumina :
1351 - 1400 of 2048 citations for 7 BROMO 1 METHYL 1H QUINOXALIN 2 ONE since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2019Quote: ... Paired-end sequencing (2 × 300 bp) was conducted on Illumina MiSeq using MiSeq v3 600-cycle kit (Illumina, San Diego, CA, USA). Sequence data was processed through MiSeq Reporter - BaseSpace for FASTQ Workflow generation followed by taxonomic classification based on Greengenes database (http://greengenes.lbl.gov/) ...
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bioRxiv - Microbiology 2019Quote: ... A total of 2 ng of DNA from each sample was used for library preparation using the Nextera reagent kit (Illumina Inc., USA). All libraries were checked for quality using the Bioanalyzer system prior to sequencing ...
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bioRxiv - Genomics 2020Quote: ... Sequencing was performed by the Vienna Biocenter Core Facilities NGS on an Illumina HiSeq2500 platform (2×125bp; Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2021Quote: ... whole-genome of each strain was sequenced using Illumina NextSeq 2×150 bp after NextEra XT library preparation (Illumina, San Diego, CA) as in de Lastours et al ...
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bioRxiv - Genomics 2021Quote: ... and the other smaller cohort for replicating the effect size of methylation sex differences (AEMS450K2, Athero-Express Methylation Study Illumina 450K 2). RNA-sequencing was performed on plaques for which DNA methylation data was available (420 out of 485 plaques) ...
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bioRxiv - Microbiology 2020Quote: ... Paired-end sequencing libraries were constructed and sequenced as 2×151 bp using the Illumina NovaSeq platform (Illumina Inc, San Diego, CA).
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bioRxiv - Neuroscience 2021Quote: ... Immediately following the cell preparation, the pellet was resuspended in the transposase reaction mix (25 μL 2× TD buffer, 2.5 μL transposase (Illumina, San Diego, USA) and 22.5 μL nuclease-free water) ...
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bioRxiv - Plant Biology 2021Quote: ... The pooled library was sequenced on an Illumina MiSeq platform using a 2× 300-bp MiSeq Reagent Nano Kit v2 (Illumina, CA, USA).
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bioRxiv - Microbiology 2020Quote: ... and submitted for DNA sequencing using the MiSeq Reagent kit v3 with the 2 × 300 bp paired-end sequencing protocol (Illumina Inc., USA).
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bioRxiv - Cancer Biology 2020Quote: ... Sequencing was performed at The Centre for Applied Genomics (Toronto, Canada) across 2 lanes of an Illumina HiSeq2500 rapid run flowcell (Illumina, San Diego) with SR100 bp.
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bioRxiv - Neuroscience 2022Quote: ... The mRNA sequencing (read length of 2×100 bases) was performed using Illumina HiSeq2000 and 2500 machines (Illumina, San Diego, CA, USA) as per the standard Illumina RNA-seq protocol ...
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bioRxiv - Systems Biology 2022Quote: ... The barcoded amplicons were sequenced on the Illumina MiSeq platform using 2 × 250 paired-end (PE) configuration (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2022Quote: ... Paired-end next-generation sequencing was performed on the Illumina MiSeq system 500 (2 x250 bp) (Illumina, San Diego, California, United States). TCR sequencing analysis was performed using RTCR as previously described(46).
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bioRxiv - Cancer Biology 2022Quote: ... Samples were sequenced in depth of 30 to 52 million paired-end 2×150bp reads on Illumina NovaSeq 6000 sequencer (Illumina, CA, USA).
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bioRxiv - Immunology 2021Quote: ... commercial reagents were used for unique dual indexed amplicon library generation according to the Artic protocol (NEBNext® ARTIC SARS-CoV-2 Library Prep Kit (Illumina®)) ...
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bioRxiv - Microbiology 2020Quote: ... The final pool was sequenced on Illumina MiSeq with a 2×250bp PE Illumina Reagent Kit v2 (Illumina, Inc., San Diego, CA) in the Biotechnology Center at the University of Wisconsin-Madison
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bioRxiv - Microbiology 2021Quote: ... according to the manufacturer’s instructions and sequenced using the Illumina MiSeq platform with a read length of 2 × 150 bp (Illumina, San Diego, USA). In total ...
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bioRxiv - Cancer Biology 2021Quote: Strand-specific libraries were generated using the TruSeq Stranded mRNA samples preparation kit (illumine Inc., San Diego, RS-122-2101/2) according to manufacturer’s instructions (Illumina, part #15031047 Rev.E). Briefly ...
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bioRxiv - Genomics 2019Quote: Amplicons of the 16S rRNA gene were sequenced through Illumina MiSeq 2×250 paired-end technology (Illumina®, San Diego, California, USA) at the Unidad de Secuenciación Masiva of the UNAM Biotechnology Institute (Cuernavaca ...
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bioRxiv - Microbiology 2020Quote: ... libraries were prepared with Nextera XT DNA Library Preparation Kit69 and paired-end (2×150 bp) sequencing was performed on a NextSeq 500 machine (Illumina Inc., USA) at the George Washington University Genomics Core facility ...
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bioRxiv - Plant Biology 2020Quote: RNA sequencing libraries of time course JA-treated root samples were made using 2 μg of total RNA following TruSeq® Stranded mRNA Library Preparation protocol (Illumina, USA). Equal amount libraries were pooled and sequenced using Illumina Novoseq platform ...
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bioRxiv - Genomics 2019Quote: ... with the flags -m 2 and -g to remove homopolymeric guanine repeats at the end of the reads (a systematic error of Illumina NovaSeq 6000).
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bioRxiv - Genomics 2019Quote: ... Second, the pellet was resuspended in the transposase reaction mix (25 μl 2× TD buffer, 2.5 μl transposase (Illumina, FC-121-1030) and 22.5 μl nuclease-free water) ...
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bioRxiv - Genomics 2020Quote: ... 2 µl each of P7 and P5 Nextera XT Index Kit v2 index primers (Illumina Catalogue numbers FC-131-2001 to 2004) were added to each well ...
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bioRxiv - Pathology 2019Quote: ... For whole genome sequence analysis isolates were sequenced (2 × 150 bp paired-end) on a MiSeq system (Illumina, San Diego, CA, USA) as previously described (18) ...
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bioRxiv - Microbiology 2019Quote: Tag-encoded 16S rRNA gene amplicon sequencing was performed on a Illumina NextSeq using v2 MID output 2×150 cycles chemistry (Illumina, CA, USA). DNA extraction and library building for amplicon sequencing was performed in accordance to Krych et al ...
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bioRxiv - Plant Biology 2019Quote: ... and submitted for DNA sequencing using the MiSeq Reagent kit v3 with the 2× 300 bp paired-end sequencing protocol (Illumina Inc., USA). A detailed description of the library preparation procedure is included in the Supplemental Methods.
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bioRxiv - Immunology 2019Quote: Single-cell RNA-sequencing libraries were generated using the 10x Genomics Single Cell 3’ Solution (version 2) kit and sequenced to an average depth of > 200k reads/cell (Illumina HiSeq 4000). Data analysis was performed using Python3 pipelines (https://github.com/sansomlab/tenx ...
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Exploring the microbial diversity in oil-contaminated mangrove sediments using 16S rRNA metagenomicsbioRxiv - Microbiology 2019Quote: ... Paired-end sequencing libraries (2 × 300 bp) were prepared using the Illumina Nextera XT Library Preparation Kit (Illumina Inc., San Diego, CA) and sequenced on the Illumina MiSeq platform using V3 chemistry according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2021Quote: ... and PCR and sequencing were performed as described previously (2 x 250bp paired-end reads, on an Illumina Miseq (Lemont, IL, USA)) [68–70] ...
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bioRxiv - Cancer Biology 2021Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA samples preparation kit (illumine Inc., San Diego, RS-122-2101/2) according to manufacturer’s instructions (Illumina, part #15031047 Rev.E). Briefly ...
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bioRxiv - Microbiology 2021Quote: ... The sequencing data were generated with paired-end sequencing (2 × 300 nucleotides) on the MiSeq platform (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2020Quote: ... Up to 96 AOIs were pooled and sequenced on a NextSeq High Output v2.5 (75 cycles, 2×38 bp; Illumina, cat. no. 20024906).
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bioRxiv - Genomics 2020Quote: ... we ran the library on a 2×100 cycle sequencing run on an Illumina MiSeq v2 (Illumina, Inc., San Diego, CA, USA). The qualified library was sequenced using the Illumina NovaSeq6000 (Illumina ...
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bioRxiv - Microbiology 2022Quote: ... and variant calling as described by the software manufacturer (https://help.geneious.com/hc/en-us/articles/360045070991-Assembly-of-SARS-CoV-2-genomes-from-tiled-amplicon-Illumina-sequencing-using-Geneious-Prime). For each sample ...
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bioRxiv - Microbiology 2022Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermalcycler with the following program ...
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bioRxiv - Microbiology 2022Quote: ... the constructed DNA libraries were sequenced with a 2 × 150 bp read length using the NextSeq 500 Sequencing System (Illumina, CA, USA).
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bioRxiv - Plant Biology 2023Quote: ... The nuclei pellet was then immediately resuspended in 25 μ L of 2x tagmentation buffer containing 2 μ L of TDE1 (Illumina). The reaction was placed at 37C for 30 minutes with gentle mixing three times ...
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bioRxiv - Evolutionary Biology 2023Quote: ... insert size 550 nt) were constructed from 1.8-2 µg gDNA with the TruSeq DNA PCR-Free kit (Illumina, San Diego, CA) and sequenced on the Illumina HiSeq 2500 by the Genomics Core Facility at Pennsylvania State University ...
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bioRxiv - Microbiology 2024Quote: ... Equal amounts of DNA from each library (except xGen-prepared) were pooled and sequenced using 2×150 bp paired-end settings on an Illumina NextSeq550 platform (Illumina, CA, USA). The xGen-prepared libraries were sequenced separately on an iSeq100 System (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... The prepared library was sequenced using a MiSeq sequencing system with a V3 reagent kit (300 × 2 bp; Illumina, 4–6 samples). Lake Biwa viral contigs/genomes (LBVs ...
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bioRxiv - Microbiology 2023Quote: ... and finally sequenced with phiX as control using paired-end 2×250-bp chemistry on the Illumina MiSeq 2000 platform (Illumina Inc., USA)
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bioRxiv - Microbiology 2023Quote: ... The quantified and denatured libraries were sequenced using paired-end 2×250-bp chemistry with 5% PhiX as an internal control on the Illumina MiSeq 2000 platform (Illumina Inc., USA). The quality-filtered reads were de-novo assembled using SPAdes (version 3.11.1) ...
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bioRxiv - Cell Biology 2023Quote: The libraries are sequenced in paired-end (2 x 150 cycles) through the SBS (sequencing by synthesis) technology using NovaSeq® 6000 (ILLUMINA®).
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bioRxiv - Genomics 2023Quote: ... 6.3 Gbp of data in 41.8 million reads (2 × 150 cycles) were produced using the MiniSeq System (Illumina, San Diego, Ca, USA). Illumina short reads were quality checked using FastQC v0.11 (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
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bioRxiv - Systems Biology 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermocycler with the following program ...
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bioRxiv - Genetics 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with partial adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermal cycler with the following program ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was conducted on an Illumina MiSeq using a paired-end 2 x 300 base-pair method (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2023Quote: ... The resulted pool of normalized DNA was cleaned one last time using magnetic beads at a ratio of 0.65:1 and thereafter sequenced at a commercial company (Baseclear, Leiden, The Netherlands) on the Illumina MiSeq platform using 2 × 300 bp paired-end sequencing (Illumina MiSeq PE300). Three negative control samples were included to detect possible contamination during library preparation and sequencing ...
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bioRxiv - Genomics 2023Quote: ... These five tissue-specific samples were subjected to Illumina’s TruSeq Stranded mRNA library preparation kit and sequenced on NovaSeq 6000 (Illumina, 2×150 bp). For long-read RNA sequencing ...