Labshake search
Citations for Illumina :
1351 - 1400 of 1800 citations for 6 methyl 3 oxo 2 3 dihydropyridazine 4 carboxylic acid since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2020Quote: ... Paired-end sequencing (2×100bp) was performed with Illumina NovaSeq 6000 sequencing platform on a SP flowcell (Illumina, ref: 20040326).
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bioRxiv - Microbiology 2021Quote: ... DNA was diluted to 0.2 ng/μL in nuclease-free water and processed for sequencing using the Nextera XT DNA Library Prep Kit (Illumina).
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bioRxiv - Immunology 2022Quote: ... TCRseq libraries were sequenced on an Illumina Novaseq 6000 SP flowcell (67 bp read 1 and 459 bp read 2) (Illumina) to a depth of approximately 20,000 reads.
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bioRxiv - Immunology 2022Quote: ... Targeted RNAseq and Sample Tag libraries were sequenced on an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina) to a depth of approximately 40,000 reads and 10,000 reads per cell ...
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bioRxiv - Immunology 2022Quote: ... whose lengths were about 600 base pairs were sequenced using an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina). Only read2 contained the sequence regarding the definition of T cell clones.
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bioRxiv - Immunology 2022Quote: ... Equimolar amounts of each library were paired-end sequenced (2*38 bp, 75 cycles) on a NextSeq 550 instrument (Illumina) using the NextSeq 500/550 High Output Kit v2.5 (Illumina).
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bioRxiv - Cancer Biology 2022Quote: ... The libraries were quantified by qPCR and sequenced in paired-end mode (2×75 bp) with NextSeq 500 (Illumina, CA). For each sample generated by the Illumina platform ...
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bioRxiv - Cancer Biology 2022Quote: ... The bead-bound fragments are then amplified and sample indexed using P5 and RPI-X (binds the TruSeq Small RNA Read 2 handle and adds a sample index and P7 Illumina sequencing handle ...
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bioRxiv - Cell Biology 2022Quote: ... cells were pooled and sequenced on an Illumina NextSeq instrument using 2×75 paired end reads on a NextSeq high output kit (Illumina). Reads were mapped to the Mus musculus mm10 reference genome using STAR ...
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bioRxiv - Genomics 2022Quote: ... Library preparation and sequencing was performed by the Innovative Genomics Institute Next-Genration Sequencing Core using MiSeq V2 Micro 2×150bp kit (Illumina). Reads were trimmed and merged (Geneious Prime ...
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bioRxiv - Molecular Biology 2019Quote: ... and sequenced paired-end (PE) 2×150 on the Illumina MiSeq machine using 300-cycle MiSeq Reagent Kit v2 or Micro Kit v2 (Illumina). FASTQs (post-demultiplexing ...
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bioRxiv - Evolutionary Biology 2019Quote: ... The ~2 kb jumping library was prepared using the 2-to-5-kb insert Illumina Mate-pair library prep kit (V2; Illumina) as previously described [79] ...
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bioRxiv - Systems Biology 2020Quote: ... DNA was first extracted from stool in line with the Human Microbiome Project’s (HMP) Core Sampling Protocol A (hmpdacc.org) and then sequenced using 2 x 300 bp paired-end sequencing (Illumina MiSeq). Raw sequences were processed using Illumina’s software ...
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bioRxiv - Cancer Biology 2019Quote: ... Sequencing was performed on a HiSeq 2000 series for 2 × 100 paired end reads with a 7 nucleotide read for indexes using Cycle Sequencing v3 reagents (Illumina). All regions were covered by >200 reads.
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bioRxiv - Genomics 2019Quote: ... For HapMap samples and three PGT-M families paired-end (2×125bp) sequencing was performed on a HiSeq2500 system (Illumina) in multiple runs ...
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bioRxiv - Microbiology 2020Quote: ... The sequencing was performed on the Illumina iSeq platform as part of a flowcell (2 x 151, 300 cycles; Illumina). The genomes were trimmed and assembled in CLC Genomics Workbench version 12.0.3 ...
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bioRxiv - Evolutionary Biology 2019Quote: ... We then generated retinal transcriptomes from four F1 from the cross using a TruSeq RNA Sample preparation kit v.2 (Illumina) and sequenced on an Illumina HiSeq1000 with 100 bp single-end reads ...
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bioRxiv - Molecular Biology 2019Quote: ... Sequencing was performed with 2×125 base pair reads on a HiSeq 2500 with V4 chemistry (Illumina, San Diego, CA). FASTQ files were processed as described above ...
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bioRxiv - Genomics 2019Quote: A set of 196 strains was subjected to whole genome shotgun sequencing using 2×250 bp Illumina (Illumina, Inc., USA) paired-end reads by MicrobesNG (https://microbesng.uk/ ...
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bioRxiv - Molecular Biology 2019Quote: ... An equimolar pool was generated with the eight libraries and the pool was sequenced in 2 lanes 50 nt single read in an Illumina HiSeq2500 (Illumina).
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bioRxiv - Molecular Biology 2019Quote: ... 2 ug of total RNA were processed for rRNA depletion by Ribozero Gold rRNA Removal kit (Human/Mouse/Rat) (Illumina) following manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2019Quote: ... An equimolar pool was generated with the eight libraries and the pool was sequenced in 2 lanes 50 nt single read in an Illumina HiSeq2500 (Illumina). Libraries were also used as a template for qPCR using the primers corresponding to telomeric repeats (tel ...
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bioRxiv - Molecular Biology 2019Quote: ... an equimolar pool was generated and the pool was sequenced in 2 lanes 50 nt paired-end in an Illumina HiSeq2500 (Illumina). ATAC-qPCR was performed with the same primers as in the ChIP-qPCR experiments (Table 3 ...
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bioRxiv - Pathology 2020Quote: ... sequencing libraries were generated using 2 µg of total RNA per sample with the TruSeq RNA sample preparation protocol from Illumina according to the manufacturer’s recommendations ...
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bioRxiv - Systems Biology 2020Quote: ... DNA was diluted to 0.2 ng/uL in nuclease-free water and processed for sequencing using the Nextera XT DNA Library Prep Kit (Illumina).
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bioRxiv - Evolutionary Biology 2019Quote: ... incognita isolates by 2×150 bp paired-end Illumina NextSeq 500 sequencing with High Output Flow Cell Cartridge V2 (#15065973, Illumina) and High Output Reagent Cartridge V2 300 cycles (#15057929 ...
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bioRxiv - Systems Biology 2019Quote: ... Pooled libraries were utilized for clustering amplification on cBot using HiSeq 3000/4000 PE Cluster Kit and sequenced with 2×75bp paired-end configuration on HiSeq4000 (Illumina) using a HiSeq 3000/4000 PE SBS Kit ...
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bioRxiv - Genomics 2019Quote: ... PE library with an insert size range of 250-370 bp was developed and sequenced (2 × 100bp) using Genome Analyzer IIx sequencer (Illumina). Quality filtering and the raw reads were carried out with Trimmometic57 and Fastx-Toolkit (http://hannonlab.cshl.edu/fastx_toolkit/) ...
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bioRxiv - Microbiology 2020Quote: ... Amplicon sequencing was performed on an Illumina MiSeq platform using Reagent Kit v2 [2×250 cycles] (Illumina Inc., CA, US). The MiSeq Controller Software Casava 1.8 (Illumina ...
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bioRxiv - Microbiology 2021Quote: ... Samples were sequenced using a MiSeq sequencing system and MiSeq V3 (2 × 300 bp) reagent kits (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2019Quote: ... Linear amplified aRNA from cell bodies and axon samples (2 biological replicates each) was used to prepare RNASeq libraries using the strand-specific ScriptSeq protocol (Illumina). Paired-end sequencing (2x 150bp ...
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bioRxiv - Neuroscience 2020Quote: ... Sequencing was performed on Illumina HiSeq 4000 paired-end at 2 × 126 bp using the TruSeq SBS kit v4-HS (Illumina).
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bioRxiv - Plant Biology 2021Quote: ... Eighteen libraries differentially indexed using the FastGene Adaptor kit (Nippon Genetics) were multiplexed in one lane and sequenced (2 × 150-bp paired-end reads) on a HiSeq X (Illumina) by GENEWIZ.
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bioRxiv - Genomics 2019Quote: ... (2) six cases prepared with the Nextera Mate-pair Library Construction Kit (hereafter called Nextera, Illumina, San Diego, CA, USA) released by the 1000 Genomes Project 25 were used for comparison.
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bioRxiv - Microbiology 2019Quote: ... and paired-end sequences (2 x 250-bp) were generated on an Illumina MiSeq instrument with a 500-cycle MiSeq Reagent v2 kit (Illumina). Library preparation and sequencing was done at the Genetic Diversity Center Zurich (GDC) ...
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bioRxiv - Neuroscience 2019Quote: ... cells were pooled and sequenced in an Illumina NextSeq500 instrument using 2 × 75 paired end reads on a NextSeq high-output kit (Illumina). After de-multiplexing the raw reads to single-cell datasets ...
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bioRxiv - Cell Biology 2020Quote: ... The pool of libraries was loaded onto one lane of an Illumina HiSeq 4000 flow cell and sequencing was performed in a 2 × 150 bp paired end format using HiSeq 4000 SBS reagents (Illumina) and approximately 312 million acceptable quality reads were achieved ...
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bioRxiv - Physiology 2021Quote: ... were clustered and amplified on cBot using HiSeq 3000/4000 PE Cluster Kit and sequenced (2×75 bp paired-end reads) on HiSeq4000 (Illumina) using HiSeq 3000/4000 PE SBS Kit ...
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bioRxiv - Neuroscience 2021Quote: ... All resulting libraries were pooled to be equimolar and sequenced on 2 lanes of an Illumina Genome Analyzer HiSeq 2500 (Illumina) with a single ended read length of small 50 bp ...
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bioRxiv - Microbiology 2021Quote: ... The raw FASTQ files (2 x 150 bp) generated by an Illumina® NovaSeq 6000 (Illumina®, San Diego, USA) were trimmed to remove Illumina adapter sequences using Cutadapt v1.2.1 32 ...
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bioRxiv - Immunology 2021Quote: ... Sequencing was performed in the Human Immunology Core Facility at the University of Pennsylvania using an Illumina 2× 300-bp paired-end kit (Illumina MiSeq Reagent Kit v3 ...
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bioRxiv - Genomics 2021Quote: ... The multiplexed pool was quantified by qPCR and sequenced (paired-end, 2 x 151 cycles and 10 bp for the index reads) using a NovaSeq 6000 device (Illumina) at 3-fold coverage.
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bioRxiv - Cancer Biology 2021Quote: ... Ribo Zero Gold was then used to deplete ribosomal RNAs (2 reactions were used, and the 50°C step was omitted, Illumina). RNA was then purified using Oligo Clean & Concentration kit ...
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bioRxiv - Cancer Biology 2021Quote: ... The resulting pool was loaded into 200cycle NovaSeq Reagent cartridge for 2×100 sequencing and sequenced on a NovaSeq6000 following the manufacturer’s recommended protocol (Illumina Inc.).
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bioRxiv - Microbiology 2021Quote: ... Paired-end sequencing was performed using a HiSeq 4000 instrument (2 x 150 bp) as recommended by the manufacturer (Illumina). Raw reads were trimmed with Trimmomatic version 0.36 (Bolger et al ...
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bioRxiv - Microbiology 2020Quote: ... Libraries were prepared using the NEB Next Ultra II kit (New England Biotech, Ipswich, MA) and paired-end sequenced (2×150bp) on a NextSeq system (Illumina). Adaptors were removed using cutadapt v1.10 [28] and reads assembled using SPAdes v3.7.1 [29] ...
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Comparative effectiveness of probiotic-based formulations on cecal microbiota modulation in broilersbioRxiv - Microbiology 2019Quote: ... DNA samples were library prepared for NGS using the Illumina MiSeq platform (2 × 300 bp; Illumina, San Diego, CA, USA) by Ohio State University Molecular and Cellular Imaging Center.
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bioRxiv - Immunology 2021Quote: VH libraries from sorted B cells were subjected to NGS on the MiSeq platform with the reagent kit V3 2 × 300 bp paired-end (Illumina), using an input concentration of 16 pM with 5% PhiX ...
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bioRxiv - Molecular Biology 2021Quote: ... The index sequences were defined by the combination of primers with TruSeq HT index 1 (D 7xx) and TruSeq HT index 2 (D 5xx) (Illumina). Index PCR was performed using KAPA HiFi HS ReadyMix (Kapa Biosystems ...
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bioRxiv - Molecular Biology 2021Quote: The amplicons were sequenced on an Illumina MiSeq platform in 2 × 251 bp paired-end mode using MiSeq Reagent Nano Kit v2 500 cycles (Illumina). The sequenced reads were mapped to the human reference genome hg19 using the methylation analysis tool Bismark v0.18.1 (Babraham Bioinformatics)52 ...