Labshake search
Citations for Illumina :
1201 - 1250 of 2469 citations for 7 Diethylamino 3 5 6 dimethyl 2 benzoxazolyl 2H 1 benzopyran 2 one since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cancer Biology 2021Quote: ... and PCR and sequencing were performed as described previously (2 x 250bp paired-end reads, on an Illumina Miseq (Lemont, IL, USA)) [68–70] ...
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bioRxiv - Cancer Biology 2021Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA samples preparation kit (illumine Inc., San Diego, RS-122-2101/2) according to manufacturer’s instructions (Illumina, part #15031047 Rev.E). Briefly ...
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bioRxiv - Microbiology 2021Quote: ... The sequencing data were generated with paired-end sequencing (2 × 300 nucleotides) on the MiSeq platform (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2020Quote: ... Up to 96 AOIs were pooled and sequenced on a NextSeq High Output v2.5 (75 cycles, 2×38 bp; Illumina, cat. no. 20024906).
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bioRxiv - Genomics 2020Quote: ... we ran the library on a 2×100 cycle sequencing run on an Illumina MiSeq v2 (Illumina, Inc., San Diego, CA, USA). The qualified library was sequenced using the Illumina NovaSeq6000 (Illumina ...
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bioRxiv - Microbiology 2022Quote: ... and variant calling as described by the software manufacturer (https://help.geneious.com/hc/en-us/articles/360045070991-Assembly-of-SARS-CoV-2-genomes-from-tiled-amplicon-Illumina-sequencing-using-Geneious-Prime). For each sample ...
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bioRxiv - Microbiology 2022Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermalcycler with the following program ...
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bioRxiv - Microbiology 2022Quote: ... the constructed DNA libraries were sequenced with a 2 × 150 bp read length using the NextSeq 500 Sequencing System (Illumina, CA, USA).
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bioRxiv - Plant Biology 2023Quote: ... The nuclei pellet was then immediately resuspended in 25 μ L of 2x tagmentation buffer containing 2 μ L of TDE1 (Illumina). The reaction was placed at 37C for 30 minutes with gentle mixing three times ...
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bioRxiv - Microbiology 2023Quote: ... and finally sequenced with phiX as control using paired-end 2×250-bp chemistry on the Illumina MiSeq 2000 platform (Illumina Inc., USA)
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bioRxiv - Cell Biology 2023Quote: The libraries are sequenced in paired-end (2 x 150 cycles) through the SBS (sequencing by synthesis) technology using NovaSeq® 6000 (ILLUMINA®).
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bioRxiv - Genetics 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with partial adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermal cycler with the following program ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was conducted on an Illumina MiSeq using a paired-end 2 x 300 base-pair method (Illumina, San Diego, CA, USA).
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bioRxiv - Systems Biology 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermocycler with the following program ...
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bioRxiv - Genomics 2023Quote: ... 6.3 Gbp of data in 41.8 million reads (2 × 150 cycles) were produced using the MiniSeq System (Illumina, San Diego, Ca, USA). Illumina short reads were quality checked using FastQC v0.11 (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
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bioRxiv - Microbiology 2023Quote: ... The resulted pool of normalized DNA was cleaned one last time using magnetic beads at a ratio of 0.65:1 and thereafter sequenced at a commercial company (Baseclear, Leiden, The Netherlands) on the Illumina MiSeq platform using 2 × 300 bp paired-end sequencing (Illumina MiSeq PE300). Three negative control samples were included to detect possible contamination during library preparation and sequencing ...
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bioRxiv - Genomics 2023Quote: ... These five tissue-specific samples were subjected to Illumina’s TruSeq Stranded mRNA library preparation kit and sequenced on NovaSeq 6000 (Illumina, 2×150 bp). For long-read RNA sequencing ...
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bioRxiv - Microbiology 2023Quote: ... cDNA was amplified using ARTIC v4 primer pools (https://github.com/artic-network/artic-ncov2019) and variant calling results were generated using the SIGNAL (SARS-CoV-2 Illumina GeNome Assembly Line) pipeline v1.5.0 42 ...
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bioRxiv - Cell Biology 2023Quote: ... and 2×150 bp paired-end sequencing was performed at a depth of approximately 400 million reads (HiSeq; Illumina, San Diego, USA). Cellranger (Version 3.0.2 ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was conducted on an Illumina MiSeq using a paired-end 2 x 300 base-pair method (Illumina, San Diego, CA, USA). We estimated this should provide a mean of 60 000 reads per sample ...
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bioRxiv - Cancer Biology 2023Quote: ... Bacterial 16S rRNA gene V1-V2 region was amplified using 27F and 338R PCR primers and sequenced on a MiSeq (2×250 bp; Illumina, Hayward, CA). Bioinformatic processing and statistical analysis were performed in R software environment as described previously 62 ...
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bioRxiv - Genomics 2023Quote: ... 0.2 (Huang & Li, 2023) was run on all three final assemblies (i.e., MinION data, MinION data polished with Illumina data, and hybrid) generated for each species ...
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bioRxiv - Evolutionary Biology 2023Quote: ... insert size 550 nt) were constructed from 1.8-2 µg gDNA with the TruSeq DNA PCR-Free kit (Illumina, San Diego, CA) and sequenced on the Illumina HiSeq 2500 by the Genomics Core Facility at Pennsylvania State University ...
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bioRxiv - Microbiology 2024Quote: ... Equal amounts of DNA from each library (except xGen-prepared) were pooled and sequenced using 2×150 bp paired-end settings on an Illumina NextSeq550 platform (Illumina, CA, USA). The xGen-prepared libraries were sequenced separately on an iSeq100 System (Illumina ...
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bioRxiv - Cell Biology 2022Quote: ... pooled in equal molecular concentrations and sequenced on one lane of Hiseq (Illumina) according to the manufacturer’s protocol.
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bioRxiv - Genomics 2019Quote: ... The sample was sequenced on one lane of a HiSeq 2000 instrument (Illumina), using a 100 bp single-end kit.
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bioRxiv - Evolutionary Biology 2021Quote: ... This WGS library was sequenced in one lane of a MiSeq platform (Illumina) using v3 reagents to produce paired 300-bp reads ...
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bioRxiv - Immunology 2020Quote: ... and run in one lane on a flow cell of HiSeq 4000 (Illumina).
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bioRxiv - Genomics 2019Quote: ... falleni fragment library on one half of a MiSeq (300bp paired-end, Illumina, San Diego ...
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bioRxiv - Developmental Biology 2020Quote: ... and sequenced on one high output flowcell of an Illumina NextSeq 500 (Illumina) with paired-end 40 bp reads.
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bioRxiv - Genomics 2021Quote: ... and paired-end sequenced on one lane of a HiSeq 2500 platform (Illumina).
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bioRxiv - Genetics 2020Quote: ... Barcoded libraries were sequenced using HiSeq4000 (Illumina, one lane per 10x chip position) with 50bp or 75bp paired end reads to an average depth of 40,000-60,000 reads per cell.
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bioRxiv - Microbiology 2023Quote: ... Small RNA Seq 3’ adapters (Illumina) were ligated using T4 RNA ligase (NEB ...
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bioRxiv - Immunology 2023Quote: ... 3’ adapters (Illumina Universal Adapter, Illumina Multiplexing Adapter ...
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bioRxiv - Microbiology 2019Quote: ... mixed with the PhiX control library v3 (diluted to 7 pM; Illumina, San Diego, USA), and loaded on an Illumina MiSeq cartridge ...
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bioRxiv - Genetics 2020Quote: ... and the libraries were sequenced in pools of 6 (Illumina HiSeq2500 high output flow-cell ...
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bioRxiv - Cancer Biology 2023Quote: ... Illumina sequencing libraries with 6-bp single indices were constructed from 1 μg total RNA using the TruSeq Stranded mRNA LT kit (Illumina, RS-122-2101). The resulting library was validated using the Standard Sensitivity NGS Fragment Analysis Kit (AATI ...
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bioRxiv - Microbiology 2019Quote: ... 2 µL of each P7 and P5 of Nextera XT Index Kit v2 index primers (Illumina Catalogue No. FC-131-2001 to 2004) were added to each well ...
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bioRxiv - Neuroscience 2019Quote: ... Libraries were sequenced in a paired-end 150 bp (2×150bp) configuration on the NextSeq 500 Illumina platform (Illumina, San Diego, CA, USA). Raw reads were processed and analyzed on the Stampede Cluster at the Texas Advanced Computing Facility (TACC) ...
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bioRxiv - Microbiology 2019Quote: ... Then applicants were pooled into equimolar quantities and subjected to high-throughput sequencing using Miseq Benchtop Sequencer for 2 × 300 bp pair-end sequencing (Illumina, San Diego, CA). Databases of EzBioCloud and Central Bureau of Fungal Cultures (CBS-KNAW ...
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bioRxiv - Plant Biology 2019Quote: ... Libraries for RNA expression analysis were prepared in duplicates from 2 μg of total RNA using the TrueSeq Stranded mRNA Sample Prep Kit (Illumina, San Diego, CA) following the manufacturer’s instructions ...
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bioRxiv - Genomics 2019Quote: ... V3-V4 16S rRNA was amplified from total genomic DNA extracted from the swab and sequenced (2 × 300bp) on an Illumina MiSeq (Illumina, San Diego, CA). 16S rRNA bacterial sequence reads were assessed for quality and analyzed using phylogenetic and Operational Taxonomic Unit (OTU ...
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bioRxiv - Genomics 2021Quote: ... Whole-genome sequencing data were generated using (i) an Illumina NextSeq-500 platform with a 2 × 150 nt paired-end protocol (Nextera XT library, Illumina, San Diego, CA); and (ii ...
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bioRxiv - Immunology 2021Quote: ... 62 samples including the mock community were pooled at equimolar concentrations and the library was sequenced using a MiSeq sequencer with 2 x 250 bp paired-end run (Illumina MiSeq, v2 kit). The resulting sequence data was processed using ‘Quantitative insights into microbial ecology 2’ (QIIME2 version 2020.2 ...
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bioRxiv - Plant Biology 2020Quote: ... followed by paired end sequencing (100bp x 2) on a HiSeq2000 with a HiSeq Paired-End Cluster Generation Kit and HiSeq Sequencing Kit (Illumina, San Diego, U.S.A.). Trimmomatic (ver ...
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bioRxiv - Microbiology 2020Quote: ... 30 μL of the 20 nM library was diluted to 500 uL using Illumina buffer HT1 and loaded onto a 500 cycle MiSeq (version 2) flowcell (Illumina, MS-102-2003). Paired-end run cycle parameters were 260 (Read1 ...
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bioRxiv - Plant Biology 2021Quote: ... Prepared library was loaded into Illumina platform for cluster generation and sequencing was performed using paired-end (PE) 2×150 bp library on Illunima platform (Illumina TruSeq RNA 500) (Bolger et al. ...
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bioRxiv - Plant Biology 2021Quote: ... Paired-end (2 × 150 bp) sequencing of the cDNA libraries was performed on the Illumina HiSeq 2000 (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Microbiology 2021Quote: Paired-end DNA and cDNA libraries (2 × 150 bp) were constructed using TruSeqTM DNA Sample prep kit (Illumina Inc., San Diego, CA, USA) and TruSeqTM RNA Sample prep kit (Illumina Inc. ...
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bioRxiv - Microbiology 2021Quote: ... All 24 samples were multiplexed together into a single High Output 2×75bp run on a NextSeq 500 instrument (Illumina, San Diego, CA). Raw reads were mapped to the C ...