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Citations for Illumina :
51 - 100 of 596 citations for Leptospira Biflexa Antigen Strain Patoc 1 since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Molecular Biology 2019Quote: ... Those strains were chosen in order to genotypically match NSTI strains on the basis of micro-array-deduced clonal complexes (23) confirmed by whole genome sequencing (Illumina MiSeq technology ...
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bioRxiv - Molecular Biology 2019Quote: ... Those strains were chosen in order to genotypically match NSTI strains on the basis of micro-array-deduced clonal complexes (23) confirmed by whole genome sequencing (Illumina MiSeq technology, Illumina, San Diego ...
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bioRxiv - Microbiology 2022Quote: ... Two clones that produce the Y113F substituted Gp8 were propagated twice on strains containing only pCas9-guide for further selection and genomes were sequence verified by Illumina sequencing as described below.
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bioRxiv - Genomics 2019Quote: A set of 196 strains was subjected to whole genome shotgun sequencing using 2×250 bp Illumina (Illumina, Inc., USA) paired-end reads by MicrobesNG (https://microbesng.uk/ ...
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bioRxiv - Microbiology 2020Quote: ... The pO157-cured and WT strains were whole genome sequenced from a paired-end library to generate short-read (Illumina) sequences (ENA accessible number ...
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bioRxiv - Genomics 2019Quote: ... A whole genome library was created from strain CAI4-F2-Neut5L-NAT1-mCherry-GFP using Nextera-XT library construction strategy(Illumina) and sequenced on an Illumina MiSeq (150×150 paired end sequencing ...
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bioRxiv - Microbiology 2022Quote: ... pylori strains, were sequenced at either the University of Georgia Genomics Facility or Azenta Life Sciences (Chelmsford, MA, USA) by Illumina sequencing ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Library preparation of the modern strains was outsourced to Fasteris where classic TruSeq Nano DNA protocol following Nextera enzymatic DNA fragmentation was applied (Illumina). Sequencing for both historical and modern DNA was performed in a paired-end 2×150 cycles configuration on a NextSeq500 machine in several batches ...
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bioRxiv - Microbiology 2021Quote: ... Whole-genome sequence determinations of strain CS1 were carried out with the PacBio (Pacific Biosciences, USA) and Illumina MiSeq (Illumina, USA) sequencing platform ...
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bioRxiv - Genomics 2022Quote: ... sequencing was carried out on the Nichols reference strain using the Illumina NovaSeq 6000 platform following the manufacturer’s recommendations (Illumina, San Diego, CA). Sequencing of isolate CDC-SF003 and swab specimens were carried out using the MiSeq v2 (500 cycle ...
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bioRxiv - Genomics 2021Quote: ... whole-genome of each strain was sequenced using Illumina NextSeq 2×150 bp after NextEra XT library preparation (Illumina, San Diego, CA) as in de Lastours et al ...
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bioRxiv - Synthetic Biology 2021Quote: ... genomic library was prepared from four strains (B0, B1, B2 and B3) using the Nextera XT Library Preparation Kit (Illumina, San Diego, CA, USA), according to the manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: Whole-genome sequencing for strains AKK101 and 3336 was performed by the Virginia Commonwealth University Genomics Core using the MiSeq platform (Illumina, San Diego, CA, USA) after the construction of a paired-end sequencing library using the Illumina Nextera XT DNA sample preparation kit (Illumina ...
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bioRxiv - Epidemiology 2019Quote: ... pneumoniae isolates of the epidemic ST11-KL105 clone identified in 2006 (strain H642) and 2011 (H1523) was performed by Hi Seq 2000 Sequencing System (Illumina Inc., San Diego, CA, USA) (2 × 125 bp paired-ended reads ...
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bioRxiv - Genomics 2023Quote: ... All libraries were pooled and subjected to paired-end 75 bp sequencing (paired- end 76 nt reads with the first 1 nt of Read 1 and the last 1 nt of Read 2 trimmed) using the NextSeq500 system (Illumina, CA, USA). For each library ...
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bioRxiv - Microbiology 2023Quote: ... 1 μl of forward and 1 μl of reverse 25 μM PCR primers (Illumina), and 0.5 μl of Phusion high-fidelity DNA polymerase (New England Biolabs) ...
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bioRxiv - Neuroscience 2023Quote: ... collected with the magnet and resuspended in 24ul of Tagmentation Mix (1:1 Illumina 2× Tagmentation buffer ...
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bioRxiv - Genetics 2019Quote: ... 1% PhyX spike-in (Illumina) was included ...
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bioRxiv - Immunology 2021Quote: ... Group 1 (The Netherlands, Illumina), Group 2 (France ...
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bioRxiv - Microbiology 2021Quote: ... 1×75 cycles (Illumina, USA). Image analysis was performed in real time by the NextSeq Control Software and Real Time Analysis running on the instrument computer ...
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bioRxiv - Systems Biology 2022Quote: ... 1% PhyX spike-in (Illumina) was added then pooled ...
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bioRxiv - Genomics 2024Quote: ... Miniaturization involved testing libraries at 1/6th (IDT mini) or 1/8th (Roche mini, Illumina mini) of reaction volume tailoring input DNA to each kit between 24-45 ng total (Table 2) ...
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bioRxiv - Neuroscience 2021Quote: ... 1 μtagment DNA enzyme (Nextera, Illumina), l nuclease free water ...
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bioRxiv - Genetics 2019Quote: ... supplemented with 1 μl Tn5 (Illumina). Samples were then reverse cross-linked using the iDeal® ChIP-seq kit for histones according to the manufacturer’s instructions ...
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bioRxiv - Immunology 2021Quote: ... 1 μl of transposase (Nextera, Illumina) was added and samples were incubated at 37°C for 10 minutes followed by two washes with low-salt buffer ...
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bioRxiv - Immunology 2020Quote: ... cells were lysed in lysis buffer for 1 minute and transposed with Tagment DNA Enzyme 1 (Illumina) for 30 minutes ...
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bioRxiv - Genetics 2020Quote: ... using a bead-to-DNA ratio of 1:1 before high-throughput sequencing on the MiniSeq system (Illumina). Libraries were sequenced 1 × 75bp for a minimum coverage of 2 million read depth ...
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bioRxiv - Genomics 2022Quote: ... Consensus LADs (between the Nanopore-DamID undiluted and 1:1/10 dilution and between the two Illumina replicates) were determined using intersectBed.
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Genomics 2021Quote: ... 0.4 µM oligo 1 (a truncated Illumina read 1 sequence followed by six random bases ...
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bioRxiv - Synthetic Biology 2022Quote: ... The Read 1 sequence (excluding Illumina barcodes) was aligned to a short reference sequence of AAV9:
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bioRxiv - Synthetic Biology 2022Quote: ... The Read 1 sequence (excluding Illumina barcodes) was aligned to a short reference sequence of AAV9 ...
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bioRxiv - Genomics 2021Quote: ... at a 1:1 ratio and constructed into sequencing libraries using TruSeq DNA Preparation Kit (Illumina Inc, California, US). Sequencing was carried out using Illumina MiSeq paired-end 2 × 300 bp and performed by the High-Throughput Sequencing Core Facility in Biodiversity Research Center in Academia Sinica.
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bioRxiv - Microbiology 2020Quote: ... Read 1 and 2 adapter recognition sequences were provided for adapter removal (Illumina TruSeq Adapter Read 1: AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNATCTCGTATGCCGTCTTCTGCT TG, Illumina TruSeq Adapter Read 2 ...
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bioRxiv - Microbiology 2021Quote: ... The purified PCR products were then processed and sequenced using the NextSeq 75 – High Output (82 cycles in read 1, 8 cycles in index 1, and 8 cycles in index 2 SE reads) (Illumina). The sequencing data was analyzed using the Model-Based Analysis of Genome-wide CRISPR/Cas9 Knockout (MAGeCK ...
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bioRxiv - Developmental Biology 2020Quote: ... assays for size distribution and concentration prior to pooling the multiplexed libraries for single-end 1×51nt or 1×75 sequencing on the HiSeq 2500 or HiSeq 4000 System (Illumina). Libraries were sequenced to a depth of >20M uniquely aligned reads.
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bioRxiv - Plant Biology 2020Quote: ... A total of 56 samples (Appendix 1) were sequenced together on one lane of 1×75bp NextSeq500 High Output (Illumina).
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bioRxiv - Neuroscience 2022Quote: ... using single end 63bp for Read 1 and 12bp for index 1 with a high output 75bp kit (20024906, Illumina).
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bioRxiv - Neuroscience 2022Quote: ... using single end 75bp for Read 1 and 8bp for index 1 and 8bp for Index 2 with a high output 75bp kit (20024906, Illumina).
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bioRxiv - Evolutionary Biology 2023Quote: ... Sequence data were first converted into fastq format using bcl2fastq v2.17.1.14 with the following parameters --use-bases-mask=Y150,I13,I12,Y150 --minimum-trimmed-read-length=1 --mask-short-adapter-reads=1 --create-fastq-for-index-reads (Illumina).
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bioRxiv - Systems Biology 2024Quote: ... Libraries were run on an Illumina Nextseq 550 instrument using the MetSeq Primer 1 (NuGEN) mixed with the Read 1 primer (Illumina) according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina ...
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bioRxiv - Genomics 2019Quote: ... and 1 µl of Nextera Tn5 enzyme (Illumina) on ice and incubated at 55°C for 5 minutes ...
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bioRxiv - Microbiology 2021Quote: ... 12 assemblies were done: 1) baseline (Illumina only), 2 ...
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bioRxiv - Genomics 2021Quote: ... 1 μL 12.5 μM Nextera Ad1 primer (Illumina), 1 μL 12.5 μM Nextera Ad2 barcoded primer (Illumina) ...
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bioRxiv - Molecular Biology 2023Quote: ... and 1 µL of amplicon tagmentation mix (Illumina) in a final volume of 10 µL and incubated at 55 °C for 7 min ...
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bioRxiv - Molecular Biology 2023Quote: ... Read 1 was read with primer HP6 (Illumina) with 3 dark cycles (first 3 bases of read 1 were not read) ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries with 1 % spiked-in PhiX control (Illumina) were sequenced at the 75-bp paired end on a high output flow cell using an Illumina NextSeq550 instrument at a sequencing depth of ∼1 M reads per cell at the sequencing open lab of the German Cancer Research Center.
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bioRxiv - Genomics 2019Quote: ... The resulting libraries always contain dual-indexes in the standard indexing positions and may optionally contain additional internal indexes (Figs. 1–3; Table 1; Illumina, 2018b). These indexes are recovered through the four standard separate sequencing reactions generated by Illumina instruments when doing paired-end sequencing (Fig ...