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Citations for Illumina :
51 - 100 of 237 citations for 4 4' Bi 7H benz de anthracene 7 7' dione since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Developmental Biology 2021Quote: ... Sample de-multiplexing was performed using CASAVA 1.8.2 (Illumina).
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bioRxiv - Molecular Biology 2020Quote: ... After de-multiplexing sequenced raw files with bcl2fastq (Illumina), quality was checked with FastQC[36] ...
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Genetic heterogeneity in the Salmonella Typhi Vi capsule locus: A population genomic study from FijibioRxiv - Microbiology 2023Quote: ... De novo draft genome assemblies were generated from Illumina short reads using SPAdes v v3.14.1 and were screened for known antimicrobial resistance determinants in AMRFinderPlus (https://github.com/MDU-PHL/abritamr ...
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bioRxiv - Cell Biology 2023Quote: ... and reads were de-multiplexed using Illumina bcl2fastq (Illumina). De-multiplexed reads were then aligned to the mouse GRCm38/mm10 sequence using STAR-2.7.9a ...
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bioRxiv - Cell Biology 2024Quote: ... NextSeq raw files were de-multiplexed using bcl2fastq (Illumina).
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bioRxiv - Cell Biology 2024Quote: ... MiSeq raw files were de-multiplexed using bcl2fastq (Illumina). The occurrence of each barcode in the sequencing reads was counted using a bash script (Beneke and Gluenz 2020) ...
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bioRxiv - Genomics 2022Quote: ... The library was run across 4 lanes of a NovaSeq (Illumina), multiplexed with other samples.
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bioRxiv - Molecular Biology 2022Quote: ... by adding 4 μl of 1× CircLigase II Buffer (Epicentre/Illumina), 2 μl of 50mM of MnCl2 ...
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bioRxiv - Microbiology 2023Quote: ... puteoserpentis (499ROV/1-4) specimens using short-read (Illumina HiSeq 3000) and long-read (PacBio ...
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bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA depletion with additional probes recommended by Illumina (Table 4), stranded library preparation (Illumina Ribo-Zero Plus rRNA Depletion w/ Stranded Total RNA) ...
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bioRxiv - Molecular Biology 2024Quote: ... and NovaSeq 1.5 Xp 4-Lane Kit (Illumina, cat. no. 20043131), samples were sequenced on the NovaSeq 6000 system (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... Libraries were sequenced (4 samples per Illumina Novaseq SP flow cell) aiming for a minimum 25,000 read pairs per spot ...
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bioRxiv - Genomics 2021Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) [40] and adapter sequences were removed (Clip adaptor sequence ...
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bioRxiv - Immunology 2021Quote: ... After de-multiplexing using the MiSeq Reporter software (Illumina Inc.), the analysis of the read sequences was performed by a Visual Basic-based in-house software (NGSSequence Analyser ...
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bioRxiv - Pathology 2023Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) and adapter sequences were removed (Clip adaptor sequence ...
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bioRxiv - Plant Biology 2023Quote: ... and automatically de-multiplexed by the BaseSpace Sequence Hub (Illumina).
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bioRxiv - Plant Biology 2023Quote: Raw sequencing data were de-multiplexed with bcl2fastq software (Illumina). FASTQ files were mapped to the TAIR10 genome using STAR with default parameters (Dobin et al ...
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bioRxiv - Molecular Biology 2023Quote: ... Dual indexed samples were de-multiplexed using bcl2fastq software (Illumina).
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bioRxiv - Genomics 2021Quote: ... 3nM libraries were loaded across 4 lanes on the HiSeq 4000 (Illumina).
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bioRxiv - Genomics 2023Quote: ... 4 out of 49 samples only had microarray genotype data from Illumina Omni2.5 chips ...
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bioRxiv - Synthetic Biology 2023Quote: ... The final library was diluted to 4 nM using Resuspension Buffer (Illumina). The rest of the library preparation was completed following the Denature and Dilute Libraries Guide for MiniSeq System by Illumina ...
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bioRxiv - Molecular Biology 2023Quote: ... 2 or 4 nM concentration and run on NextSeq 550 sequencer (Illumina) with NextSeq 500/550 High Output v2.5 (75 cycles PE ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The reference-guided and de novo RNA-seq assemblies from Illumina short read data (Supplementary Table 1a ...
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bioRxiv - Genomics 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
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bioRxiv - Evolutionary Biology 2022Quote: ... De-convolution was performed using the CASAVA software (Illumina, United States).
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bioRxiv - Genetics 2022Quote: ... followed by de-multiplexing with the bcl2fastq 2.17 software from Illumina.
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bioRxiv - Animal Behavior and Cognition 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
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bioRxiv - Cell Biology 2020Quote: ... Paired de-multiplexed fastq files were generated using CASAVA software (Illumina) and processed using tools from CLC Bio (QIAGEN).
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bioRxiv - Genomics 2022Quote: We de-multiplexed paired-end reads using BCL2FASTQ v2.17.1.14 (Illumina, Inc.) and removed adapter sequences using CUTADAPT v1.3 (Martin 2011) ...
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bioRxiv - Molecular Biology 2024Quote: ... Base calling and de-multiplexing were performed using the bcl2fastq2 (Illumina) v2.20 ...
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bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
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bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
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bioRxiv - Developmental Biology 2021Quote: ... 4 nM 10X scATAC-seq library was sequenced on a NextSeq500 platform (Illumina) using NextSeq 500/550 High Output Kit v2.5 (75 Cycles ...
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bioRxiv - Developmental Biology 2021Quote: ... 4 nM 10X scRNA-seq libraries were sequenced on a NextSeq500 platform (Illumina) using NextSeq 500/550 High Output Kit v2.5 (150 Cycles ...
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bioRxiv - Biophysics 2022Quote: ... The sequencing (Step 4) was performed using a Hi-Seq sequencer (Illumina, US) and the data was then filtered using the framing sequence ACAC with a quality score larger then 20 and analyzed (Step 5 ...
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bioRxiv - Cell Biology 2023Quote: ... 4 ATAC-seq libraries were sequenced per lane in HiSeq 2500 System (Illumina) to generate paired-end 50-bp reads ...
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bioRxiv - Microbiology 2024Quote: ... DNA from the V3-4 region was amplified using a primer set (Illumina, San Diego ...
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bioRxiv - Molecular Biology 2022Quote: ... The raw MiniSeq output was de-multiplexed using bcl2fastq2 (Illumina, version 2.20.0) with the flag --barcode-mismatches 0 ...
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bioRxiv - Physiology 2020Quote: ... Sequence data was de-multiplexed using bcl2fastq2 Conversion Software v2.18 (Illumina Inc.) and quality analysed using FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
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bioRxiv - Microbiology 2021Quote: ... A draft wild type phi47 genome was assembled de novo from Illumina reads obtained from MiGS ...
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bioRxiv - Molecular Biology 2020Quote: ... The FASTQ files created were de-multiplexed using the bclfastq2 software (Illumina) and the software FastQC (Babraham Bioinformatics ...
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bioRxiv - Pharmacology and Toxicology 2024Quote: ... and de-multiplexing were performed using the BaseSpace cloud service by Illumina (https://basespace.illumina.com/home/index ...
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bioRxiv - Molecular Biology 2023Quote: ... The raw MiniSeq output was de-multiplexed using bcl2fastq2 (Illumina, version 2.20.0) with the flag --barcode-mismatches 0 ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Barcoded reads were de-multiplexed using the CASAVA pipeline 1.8 (Illumina, Inc.). The obtained raw sequence reads (0.5–4 million per individual ...
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bioRxiv - Molecular Biology 2021Quote: ... libraries from amplicons 1–4 were mixed with 5% PhiX DNA control library (Illumina) and sequenced ...
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bioRxiv - Cell Biology 2022Quote: ... All CORALL generated libraries were sequenced in parallel on 4 Novaseq S4 lanes (Illumina). RNA sequencing libraries for the differential sedimentation speed based cell fractionation experiment were performed using QuantSeq 3’ mRNA-Seq kit (Lexogen ...
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bioRxiv - Microbiology 2020Quote: ... Libraries were diluted to 4 nM and sequenced on a NextSeq 500 sequencer (Illumina) with a NextSeq 500 High-Output Kit v2 (Illumina ...
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bioRxiv - Genomics 2021Quote: ... then 4 pM of the pooled library with 5% PhiX v3 control (Illumina, USA) was loaded onto an Illumina MiSeq instrument and sequenced using MiSeq V3 chemistry ...
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bioRxiv - Immunology 2024Quote: ... Libraries were multiplexed and sequenced on 4 lanes of a Nextseq 500 sequencer (Illumina) with 3 sequencing runs ...
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bioRxiv - Genomics 2020Quote: ... De-multiplexing of RNA-Seq reads was conducted using bcl2fastq v.2 (Illumina). Both DNA-Seq and RNA-Seq reads were submitted to FastQC 51 for quality validation.