Labshake search
Citations for Illumina :
601 - 650 of 1134 citations for Polybrominated Diphenyl Ether Predominant Congener Mixture 1 100 Dilution Unlabeled since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2022Quote: ... a paired-end metagenomic library was prepared from 100 ng of DNA using the DNA PCR free Library Prep Kit (Illumina, San Diego, CA, USA) and size selected at about 400 bp ...
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bioRxiv - Genetics 2022Quote: 1184 recombinant inbred lines of the S6 generation of the Global MAGIC population were genotyped from DNA extracted from leaf tissue using Genotyping-by-Sequencing (GBS, with the enzyme ApeKI) across 14 lanes of 96-sample multiplexed sequencing (100 bp single-end Illumina, Phred+33 fastq format) as reported in Zaw et al ...
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bioRxiv - Genomics 2022Quote: ... Integrity of genomic DNA was verified by the DKFZ Genomics and Proteomics Core Facility and 100-250 ng subjected to DNA methylation analysis using Infinium Mouse Methylation BeadChip arrays (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2020Quote: ... RNA-seq libraries were prepared using 73-100 ng of total RNA and the Illumina TruSeq Stranded mRNA reagents (Illumina; San Diego, California, USA) according to the supplier’s instructions ...
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bioRxiv - Evolutionary Biology 2022Quote: Sequencing libraries were constructed from 100 ng of total DNA using the TruSeq Nano DNA LT library preparation kit (Illumina, San Diego, CA, USA) for an insert size of 350 base pairs (bp) ...
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bioRxiv - Genomics 2019Quote: ... Libraries for the replication sample set were sequenced over two lanes indexed at 4 samples per lane with 100 base pair single-end reads and spiked-in PhiX DNA on the HiSeq 4000 (Illumina, San Diego, CA, USA) by the Vincent J ...
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bioRxiv - Microbiology 2019Quote: ... multiplexed on the lanes of HiSeq Rapid PE v2 Flow cells for generating paired reads of 100 bases on an Illumina HiSeq 2500 sequencer (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2020Quote: ... BS-converted DNA (100 ng) of each sample was used for preparing the BS-seq library via the TruSeq DNA Methylation Kit (Illumina, EGMK91324, San Diego, CA). The quality of the libraries was checked using Qubit assays (Q32850 ...
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bioRxiv - Microbiology 2021Quote: ... Sequencing was performed using multiplexed libraries on the Illumina HiSeq platform to produce paired end reads of 100 nucleotides in length (Illumina, San Diego, CA, USA). Quality control involved analysis of contamination with Kraken (version 1.1.1)(37) ...
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bioRxiv - Cancer Biology 2022Quote: ... and sequenced on the Illumina NextSeq 2000 sequencer with the P3-200 cycle reagent kit in order to generate approximately 50M million 100-base read pairs per sample (Illumina, Inc., San Diego, CA).
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bioRxiv - Microbiology 2022Quote: ... with up to 100 ng DNA input following the manufacturers protocol using internal dual-index 8 bp barcodes with Nextera® adapters (Illumina, San Diego, CA). All libraries were quantified with TapeStation®(Agilent Technologies ...
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bioRxiv - Developmental Biology 2023Quote: ... The libraries for transcriptome analyses were prepared from 100 ng of total RNA using the TruSeq RNA Sample Preparation v2 kit (Illumina, San Diego, CA, USA) following the manufacturer’s protocols with minor modifications (Yatsu et al. ...
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bioRxiv - Cell Biology 2023Quote: ... The amplified libraries were sequenced to generate short 100-bp pair-end reads using an Illumina HiSeq 2500 system (Illumina, San Diego, SA, USA) according to the manufacturer’s instructions.
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bioRxiv - Microbiology 2023Quote: An equimolar pool of libraries was subjected to Illumina sequencing (2 ✕ 100 bp, paired ends) with a NovaSeq 6000 instrument and an SP flowcell (Illumina, San Diego, California, USA). Sequencing was carried out by the sequencing core facility of the Leibniz Institute on Aging - Fritz Lipmann Institute ...
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bioRxiv - Microbiology 2023Quote: All libraries were diluted to 15 pM in 96-plex pools and validated on 100-cycle paired-ends read Miseq V2 runs (Illumina, Cat. MS-102-2002), before shipping to the US at 4 nM for sequencing on the Novaseq 6000 in S4 mode at 96-plex in a 300-cycle paired-end reads run ...
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bioRxiv - Cancer Biology 2023Quote: ... 1 µg of total RNA with DV200 percentages varying from 78% to 100% underwent ribosomal depletion and library preparation using the TruSeq Stranded Total RNA LT Kit (Illumina catalog RS-122-1202) according to instructions provided by the manufacturer with 8 cycles of PCR ...
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bioRxiv - Zoology 2024Quote: ... the samples and negative controls were pooled and subjected to sequencing on the NextSeq 2000 platform (2 × 100 cycles) (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: ... The final co-culture RNA-sequencing library (fig. S20B) was deep-sequenced on a NovaSeq 6000 instrument with a 100 cycles S2 Kit (Illumina, San Diego, CA, USA) in paired-end mode (Read 1 ...
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bioRxiv - Immunology 2024Quote: ... The libraries were then pooled at 5nM and sequenced on an Illumina NextSeq 2000 instrument at a 600pM input and 2% PhiX spike in using a P3 100 cycle flow cell (Illumina, San Diego, CA, USA) resulting in 36000-58000 reads per cell.
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bioRxiv - Immunology 2020Quote: ... cells were lysed in lysis buffer for 1 minute and transposed with Tagment DNA Enzyme 1 (Illumina) for 30 minutes ...
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bioRxiv - Genetics 2020Quote: ... using a bead-to-DNA ratio of 1:1 before high-throughput sequencing on the MiniSeq system (Illumina). Libraries were sequenced 1 × 75bp for a minimum coverage of 2 million read depth ...
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bioRxiv - Cancer Biology 2020Quote: ... A sequencing library was constructed using 100 ng of total RNA and a TruSeq RNA Access Library Prep Kit (Illumina, Inc., San Diego, CA, USA), according to the manufacturer’s protocols ...
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bioRxiv - Molecular Biology 2022Quote: ... Bulk and STORM-seq K562 libraries were pooled and 2×50 bp sequencing was performed on an Illumina NovaSeq 6000 sequencer using a 100 bp S2 sequencing kit (Illumina Inc., San Diego, CA, USA). The HEK293T ...
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bioRxiv - Genomics 2019Quote: Libraries were subjected to 2×100 bp paired-end sequencing on a HiSeq 2500 or 2×150 bp a HiSeq 4000 instrument (Illumina, San Diego, California, United States), to a mean sequencing depth of 87X for CLL (range 34X-129X) ...
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bioRxiv - Microbiology 2022Quote: ... and of the ITS(+PhiX) pools were sequenced individually in-house on an iSeq 100 (paired-end, 150 bp) (Illumina, Inc., San Diego, California, USA).
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). Individually barcoded RNA-seq libraries were pooled in equimolar quantities and the quantity and quality of the final pooled libraries (two different pools in total ...
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bioRxiv - Plant Biology 2023Quote: ... with insert sizes ranging from 100 to 600 bp using a commercial kit (TruSeq stranded mRNA Sample Preparation Kit; Illumina Inc., San Diego, CA, USA). The libraries were sequenced for 100 bases using an Illumina Hiseq 2500 SE100 system.
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). All RNA samples used for transcriptomic analysis (n = 6 per group ...
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Neuroscience 2020Quote: ... Index 1: 8bp (Illumina i7 sample index); Read 2 ...
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bioRxiv - Genomics 2021Quote: ... 0.4 µM oligo 1 (a truncated Illumina read 1 sequence followed by six random bases ...
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bioRxiv - Synthetic Biology 2022Quote: ... The Read 1 sequence (excluding Illumina barcodes) was aligned to a short reference sequence of AAV9:
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bioRxiv - Synthetic Biology 2022Quote: ... The Read 1 sequence (excluding Illumina barcodes) was aligned to a short reference sequence of AAV9 ...
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bioRxiv - Genomics 2021Quote: ... at a 1:1 ratio and constructed into sequencing libraries using TruSeq DNA Preparation Kit (Illumina Inc, California, US). Sequencing was carried out using Illumina MiSeq paired-end 2 × 300 bp and performed by the High-Throughput Sequencing Core Facility in Biodiversity Research Center in Academia Sinica.
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bioRxiv - Cancer Biology 2022Quote: ... We prepared barcoded libraries for each sample and then pooled the libraries to perform asymmetric 400 + 100 bp paired-end IgSeq in one run using Miseq Reagent Kit V3 (Illumina, Miseq Reagent Kit V3, 600-cycles) on Illumina MiSeq platform.
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bioRxiv - Genetics 2022Quote: ... the genome FASTA file was augmented with ERCC sequences to create a STAR genome index with 99 bp overhangs (optimized for Illumina 2 × 100 bp paired-end reads). Two-pass mapping was executed ...
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bioRxiv - Microbiology 2020Quote: ... Read 1 and 2 adapter recognition sequences were provided for adapter removal (Illumina TruSeq Adapter Read 1: AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNATCTCGTATGCCGTCTTCTGCT TG, Illumina TruSeq Adapter Read 2 ...
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bioRxiv - Microbiology 2021Quote: ... The purified PCR products were then processed and sequenced using the NextSeq 75 – High Output (82 cycles in read 1, 8 cycles in index 1, and 8 cycles in index 2 SE reads) (Illumina). The sequencing data was analyzed using the Model-Based Analysis of Genome-wide CRISPR/Cas9 Knockout (MAGeCK ...
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bioRxiv - Developmental Biology 2020Quote: ... assays for size distribution and concentration prior to pooling the multiplexed libraries for single-end 1×51nt or 1×75 sequencing on the HiSeq 2500 or HiSeq 4000 System (Illumina). Libraries were sequenced to a depth of >20M uniquely aligned reads.
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bioRxiv - Plant Biology 2020Quote: ... A total of 56 samples (Appendix 1) were sequenced together on one lane of 1×75bp NextSeq500 High Output (Illumina).
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bioRxiv - Neuroscience 2022Quote: ... using single end 63bp for Read 1 and 12bp for index 1 with a high output 75bp kit (20024906, Illumina).
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bioRxiv - Neuroscience 2022Quote: ... using single end 75bp for Read 1 and 8bp for index 1 and 8bp for Index 2 with a high output 75bp kit (20024906, Illumina).
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bioRxiv - Evolutionary Biology 2023Quote: ... Sequence data were first converted into fastq format using bcl2fastq v2.17.1.14 with the following parameters --use-bases-mask=Y150,I13,I12,Y150 --minimum-trimmed-read-length=1 --mask-short-adapter-reads=1 --create-fastq-for-index-reads (Illumina).
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bioRxiv - Systems Biology 2024Quote: ... Libraries were run on an Illumina Nextseq 550 instrument using the MetSeq Primer 1 (NuGEN) mixed with the Read 1 primer (Illumina) according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina ...
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bioRxiv - Genomics 2019Quote: ... and 1 µl of Nextera Tn5 enzyme (Illumina) on ice and incubated at 55°C for 5 minutes ...
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bioRxiv - Microbiology 2021Quote: ... 12 assemblies were done: 1) baseline (Illumina only), 2 ...
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bioRxiv - Genomics 2021Quote: ... 1 μL 12.5 μM Nextera Ad1 primer (Illumina), 1 μL 12.5 μM Nextera Ad2 barcoded primer (Illumina) ...
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bioRxiv - Molecular Biology 2023Quote: ... and 1 µL of amplicon tagmentation mix (Illumina) in a final volume of 10 µL and incubated at 55 °C for 7 min ...
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bioRxiv - Molecular Biology 2023Quote: ... Read 1 was read with primer HP6 (Illumina) with 3 dark cycles (first 3 bases of read 1 were not read) ...