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Citations for Illumina :
601 - 650 of 816 citations for 3 1H Pyrrol 1 yl phenyl methanol since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2020Quote: ... Use of 250 pg of cDNA with 1/5 reaction of Illumina Nextera XT kit (Illumina, San Diego, CA, USA). The length distribution of the cDNA libraries was monitored using DNA High Sensitivity Reagent Kit on the Perkin Elmer Labchip GX system (PerkinElmer ...
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bioRxiv - Microbiology 2020Quote: ... 4-5 subsamples per replicate were pooled in equimolar concentrations and sequenced on a HiSeq2500 in a 1×50 bp Rapid Run (Illumina). As the first sequencing run did not deliver sufficient data for seven metatranscriptomes ...
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bioRxiv - Developmental Biology 2021Quote: ... Libraries were generated using Kapa Biosystems library preparation kit (#KK8201) and multiplexed libraries were sequenced on a 1×75 flow cell on the HiSeq2000 platform (Illumina). Reads were filtered and trimmed to remove adapter-derived or low-quality bases using Trimmomatic and checked again with FASTQC ...
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bioRxiv - Evolutionary Biology 2021Quote: ... A paired-end Illumina library (DRR029460; see also Supplementary File 1) was constructed using a TruSeq Stranded mRNA LT Sample Prep Kit (Illumina) and an RNA sample extracted from an E ...
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bioRxiv - Microbiology 2021Quote: Pair-end libraries (2×150 bp) were prepared with 1 µg genomic DNA from the evolved strains and sequenced using a MiSeq sequencer (Illumina). The PALOMA pipeline ...
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bioRxiv - Immunology 2022Quote: ... TCRseq libraries were sequenced on an Illumina Novaseq 6000 SP flowcell (67 bp read 1 and 459 bp read 2) (Illumina) to a depth of approximately 20,000 reads.
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bioRxiv - Immunology 2022Quote: ... Targeted RNAseq and Sample Tag libraries were sequenced on an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina) to a depth of approximately 40,000 reads and 10,000 reads per cell ...
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bioRxiv - Immunology 2022Quote: ... whose lengths were about 600 base pairs were sequenced using an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina). Only read2 contained the sequence regarding the definition of T cell clones.
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bioRxiv - Immunology 2022Quote: ... Small RNA libraries were prepared using 1 µg of total RNA and the TruSeq Small RNA Sample Prep Kits (Illumina) according to manufacturer’s instructions ...
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bioRxiv - Genomics 2022Quote: ... then single-end sequenced (1 x 100 bp) on one lane using TrueSeq PE150 kit (Illumina, Inc., San Diego, CA) on an Illumina HiSeq 2000 instrument ...
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bioRxiv - Molecular Biology 2022Quote: The following publicly available datasets were downloaded and used for comparison to STORM-seq: 1) K562 SMART-seq2 (Illumina runs) - SRP132313 ...
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bioRxiv - Cancer Biology 2020Quote: Sequencing was performed by the Human & Environmental Genomics core facility of Rennes on a HiSeq 1500 (Rapid SBS kit v2 1×100 cycles, Illumina). Base Calling was performed with Illumina’s CASAVA pipeline (Version 1.8).
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bioRxiv - Developmental Biology 2020Quote: ... 1 ng of amplified cDNA was used to generate barcoded libraries using the Nextera XT DNA library preparation kit (Illumina). In brief ...
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bioRxiv - Genomics 2020Quote: ... 100 ng or 1 ng purified cDNAs were used for library construction using either TruSeq DNA Nano library preparation kit (Illumina), i.e. ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Indexed RNA-Seq libraries were prepared from ~1 ug of total RNA using the TruSeq RNA Library Prep Kit v2 (Illumina) according to manufacturer’s protocol ...
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bioRxiv - Physiology 2021Quote: ... Aliquots of RNA (1 µg) were analyzed using the Illumina TruSeq Stranded Total RNA with Ribo-Zero Gold protocol (Illumina) as described (Laker et al. ...
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bioRxiv - Genetics 2021Quote: ... The bone and reference captured library pools were diluted to 1 pM with a 5% spike-in of PhiX Control V3 (Illumina) for sequencing on a NextSeq 550 (Illumina ...
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bioRxiv - Cancer Biology 2020Quote: A total of 1 μg of total RNA was used to create libraries with Illumina TruSeq Stranded Total RNA Library Prep Kit (Illumina) according to manufacturer’s instructions ...
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bioRxiv - Cell Biology 2020Quote: ... 1 ug of DNA was processed according to manufacturer instructions (Paired-End DNA sample Prep Kit – Illumina – PE-930-1001), except that DNA was ligated to custom-made adapters for 4 hours at RT ...
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bioRxiv - Microbiology 2021Quote: A total of 1□ng of dsDNA was used to prepare sequencing libraries using the Nextera XT DNA kit (Illumina). Libraries were analysed on a High Sensitivity DNA Chip on the Bioanalyzer (Agilent Technologies) ...
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bioRxiv - Microbiology 2021Quote: ... Libraries were prepared using 1 µg of RNA with TruSeq® stranded mRNA Preparation Kit (Illumina, San Diego, CA, USA) followed by sequencing with a Novaseq 6000 sequencer using 150 base read lengths in paired-end mode (Illumina ...
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bioRxiv - Molecular Biology 2021Quote: ... The index sequences were defined by the combination of primers with TruSeq HT index 1 (D 7xx) and TruSeq HT index 2 (D 5xx) (Illumina). Index PCR was performed using KAPA HiFi HS ReadyMix (Kapa Biosystems ...
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bioRxiv - Immunology 2021Quote: ... Stranded RNA libraries were then prepared from 1 μg total RNA using the TruSeq Stranded mRNA Prep Kit (Illumina, USA) following the manufacturer’s protocol ...
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bioRxiv - Genetics 2021Quote: WGS of constitutional DNA was performed using the Illumina HiSeq platform as described previously.1 Targeted MBD4 mutation screening was performed (i) using a custom MIP capture panel and sequenced on a NextSeq500 (Illumina) system ...
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bioRxiv - Developmental Biology 2021Quote: ... We tested two different amounts of Tagment DNA TDE1 enzyme (1 and 2 μl in a 50 μl reaction volume) (Illumina) per sample ...
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bioRxiv - Immunology 2022Quote: ... The library was sequenced on the NovaSeq 6000 with pair-end reads (26 bp for read 1 and 91 bp for read 2) (Illumina). Data available at accession number GSE195488.
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bioRxiv - Cancer Biology 2022Quote: ... whole-genome and targeted libraries were added to flow cell in a 67%-33% ratio and sequenced to approximately 16M fragments per sample corresponding to ~1-2x whole genome coverage using NovaSeq S4 sequencing (Illumina) with 150 bp paired-end reads.
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bioRxiv - Microbiology 2022Quote: ... Passage 1 virus stocks were further produced in Vero TMPRSS2 cells and the presence of mutations was confirmed by Illumina sequencing ...
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bioRxiv - Cancer Biology 2022Quote: ... Gene expression libraries and barcode enrichment libraries were pooled in an approximately 10:1 molar ratio and libraries were sequenced on the NovaSeq platform (Illumina).
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bioRxiv - Molecular Biology 2022Quote: ... The generated libraries were amplified using the KAPA HiFi Hotstart Ready Mix and Nextera Index Kit 1 (i7) and 2 (i5) primers (Illumina). Amplified libraries were purified using a 0.65x AMPure XP beads (Beckman Coulter ...
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bioRxiv - Developmental Biology 2022Quote: ... RNA-seq library preparation with Poly-A selection was performed with 1 µg of purified RNA using the TruSeq Stranded mRNA kit from Illumina and following the manufacturer’s protocol ...
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bioRxiv - Microbiology 2022Quote: ... 1 ng of host community DNA and viral assemblage DNA was used to generate Nextera XT libraries (Illumina; manufacturer’s protocol); After amplification (12 cycles ...
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bioRxiv - Systems Biology 2022Quote: ... cDNA libraries were prepared from 1 μg of total RNA using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA) and the Sciclone NGSx Workstation (Perkin Elmer ...
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bioRxiv - Molecular Biology 2023Quote: ... The clustered flowcell is then sequenced with a 30b read 1 and an 11b index read using a HiSeq SBS v4 50 cycle kit (Illumina) following the manufacturer’s recommendations.
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bioRxiv - Plant Biology 2023Quote: ... The RNA-seq libraries were constructed with 1 μg of RNA per sample by following the manual of TruSeq Stranded mRNA kit (Illumina). The RNA-seq libraries were sequenced on an Illumina NovaSeq 6000 or an Illumina HiSeq 4000 sequencer.
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bioRxiv - Neuroscience 2022Quote: ... Libraries were pooled from different samples based on molar concentrations and sequenced with 1% PhiX spike-in on a NextSeq 500 instrument (Illumina) with 33 bases each for read 1 and read 2 ...
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bioRxiv - Microbiology 2022Quote: ... initial DNA extracts were diluted to DNA concentrations of 0.2 ng × μL−1 and used in metagenomic library preparations with the Nextera XT DNA Library Prep Kit (Illumina Inc.). For metatranscriptomes ...
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bioRxiv - Neuroscience 2024Quote: ... Libraries were sequenced Paired-End 51 bases (in addition: 8 bases for index 1 and 8 bases for index 2) setup using the NovaSeq 6000 instrument (Illumina). SP Flow-Cell was loaded at a final concentration in Flow-Lane loaded of 400pM and including 1% PhiX ...
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bioRxiv - Neuroscience 2024Quote: ... Libraries were sequenced Single-reads 76 bases (in addition: 8 bases for index 1 and 8 bases for index 2) on NextSeq 500 (Illumina) using the NextSeq 500 High Output Kit 75-cycles (Illumina ...
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bioRxiv - Neuroscience 2023Quote: ... Female samples after MR2 were sequenced (single-end reads, 1×50 nt) with Illumina NextSeq 2000 (Illumina, San Diego, USA). Quality checks and sequencing were performed by StarSEQ GmbH (Mainz ...
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bioRxiv - Genetics 2024Quote: ... we aligned the corresponding short reads to the human reference GRCh38 using bwa mem23 (v 0.7.17-r1188; -t 48 -R “@RG\tID:1\tLB:lib1\tPL:ILLUMINA\tSM:
\tPU:unit1”). Next ... -
bioRxiv - Molecular Biology 2024Quote: ... Illumina indexes were added by amplifying 1 ng DNA to a 50 μl PCR reaction using Kapa HS enzyme and unique dual indexing primers (Illumina) for 11 cycles (Denaturation 95°C 3min ...
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bioRxiv - Cancer Biology 2024Quote: ... the sequencing was performed under the setting of single read 1×51 bp to generate ∼30 million reads per sample on HiSeq 1000 sequencer (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were pooled and single-end sequenced (1×75 bp) on the Illumina NextSeq 500 using the High-Output V2 Kit (Illumina). Read data were processed in BaseSpace ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were pooled and single end sequenced (1×75) on the Illumina NextSeq 500 using the High output V2 kit (Illumina).
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bioRxiv - Systems Biology 2024Quote: ... according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina) for the second read ...
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bioRxiv - Genomics 2024Quote: ... The sequencing library was prepared with 1 μg of DNA using the TruSeq PCR-free DNA sample preparation kit (cat# 20015962, Illumina), according to the TruSeq DNA PCR-free Reference Guide ...
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bioRxiv - Immunology 2024Quote: ... the antibody barcode library was pooled at a ratio of 1:5 with the gene expression library and sequenced on a NextSeq 2000 (Illumina) to an average depth of 34,000 reads per cell.
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bioRxiv - Genomics 2022Quote: ... Illumina) following the Illumina recommended denaturation and loading recommendations which included a 1% PhiX spike in (PhiX Control v3 Illumina). Data was uploaded to Basespace (www.basespace.illumina.com ...
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bioRxiv - Cancer Biology 2023Quote: ... Paired-end sequencing was performed for all libraries (read 1:28 bp, index read: 10 bp, read2: 82 bp) on a NovaSeq 6000 (Illumina) using NovaSeq SP Reagent Kits (100 cycles).