Labshake search
Citations for Illumina :
451 - 500 of 1573 citations for Ephrin type A receptor 2 EphA2 Human HEK293 His since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA was depleted using the RiboZero rRNA Removal Kits for Gram-positive bacteria and/or for human/mouse/rat (Illumina). 300 bp-insert RNA-seq Illumina libraries were constructed using ∼1.0 μg of enriched mRNA that was fragmented then used for synthesis of strand-specific cDNA using the NEBnext Ultra Directional RNA Library Prep Kit (NEB-E7420L) ...
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bioRxiv - Genomics 2023Quote: ... rRNA was depleted from total RNA using the Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat) (Illumina, San Diego, CA) to enrich for coding RNA and long non-coding RNA ...
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bioRxiv - Genomics 2023Quote: ... 1 µg RNA was converted to ribosomal depleted cDNA libraries ready for sequencing using the TruSeq Stranded Total RNA Library Prep Human/Mouse/Rat kit (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: ... workflow was used to estimate a matrix of sample gene expression values (92–94) using the reference human genome (GRCh37; Ensembl release 75) obtained from Illumina’s iGenomes resource (https://support.illumina.com/sequencing/sequencing_software/igenome.html) ...
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bioRxiv - Cancer Biology 2023Quote: A minimum of 500 ng of high-quality DNA from 100 EwS FFPE samples was used for methylation and CNV analysis with the Infinium Human Methylation 450K BeadChip (EPIC array; Illumina). This method can analyze 864,928 CpGs including main CpG islands and CpG sites outside of CpG islands ...
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bioRxiv - Microbiology 2024Quote: ... total RNA from mouse gut or human donors was subjected to ribosomal RNA depletion by Ribo-Zero Plus Microbiome rRNA Depletion Kit (Illumina) and cDNA libraries were generated by using Illumina Stranded Total RNA Prep (Illumina ...
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bioRxiv - Molecular Biology 2024Quote: ... RNA was extracted with a Direct-zol RNA MicroPrep Kit and subjected to an RNA-Seq library preparation using a Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina) followed by a TruSeq Stranded Total RNA Kit (Illumina) ...
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bioRxiv - Molecular Biology 2024Quote: ... RNA was extracted with a Direct-zol RNA MicroPrep Kit and subjected to RNA-Seq library preparation using a Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina) followed by a TruSeq Stranded Total RNA Kit (Illumina).
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bioRxiv - Microbiology 2023Quote: ... US) and sequencing (Illumina HiSeq2500 by Illumina, San Diego, CA, US, 2 x 250 bp for peDNA samples and Illumina HiSeq3000, 2 x 150 bp for Filter DNA) was performed at the Max Planck Genome Centre Cologne (MP-GC).
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bioRxiv - Cancer Biology 2021Quote: ... The final libraries were sequenced with 2×250bp on a MiSeq (Illumina). The MiSeq onboard software was used (Real time analysis software v1.18.54 ...
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bioRxiv - Evolutionary Biology 2021Quote: ... and sequenced using 2×250 bp paired-end sequencing on MiSeq (Illumina) platform ...
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bioRxiv - Microbiology 2022Quote: ... Sequencing libraries were prepared with MiSeq reagent kit v.2 (Illumina, USA), targeting mainly dsDNA viruses ...
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bioRxiv - Microbiology 2019Quote: ... Libraries were sequenced using 2×250bp PE Miseq (Illumina, San Diego, USA) sequencing at Génome Québec Innovation Centre at the McGill University (Montreal ...
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bioRxiv - Genomics 2020Quote: ... Paired-End Sequencing (2×150bp) was performed on the NovaSeq 6000 (Illumina) with a targeted depth of 2 million reads per sample (∼20,000X coverage).
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bioRxiv - Genomics 2020Quote: ... and 2×250 bp rapid run mode on HiSeq 2500 platform (Illumina Inc ...
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bioRxiv - Cancer Biology 2019Quote: ... and sequenced at 2 x 75 bp in a NextSeq500 instrument (Illumina). FASTQ files were aligned to the Homo sapiens/hg19 reference genome using the RNA-seq Alignment tool v1.1.1 in the Illumina’s BaseSpace ...
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bioRxiv - Evolutionary Biology 2021Quote: ... The sequencing was outsourced (GENEWIZ Illumina NovaSeq/HiSeq 2×150 bp sequencing), generating 20 million paired-end reads per replicate ...
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bioRxiv - Cancer Biology 2020Quote: ... with MiSeq Reagent Kit V3 (150 cycle) (Illumina, MS-1-2-3001). The sequencing data was de-multiplexed and trimmed to contain only the sgRNA sequence cassettes ...
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bioRxiv - Microbiology 2020Quote: ... NGS sequencing was accomplished using MiSeq v.3 2×75 chemistry (Illumina). Raw sequencing files were demultiplexed using IlluminaBasecallsToFasq procedure from PICARD package and mapped to NC_055512.2 SARS-CoV-2 reference sequence with BwaAndMarkDuplicatesPipelineSpark procedure from GATK v.4.1.5.0 package (Broad Institute ...
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bioRxiv - Neuroscience 2020Quote: ... Paired end reads (2×100bp) were obtained using the HiSeq 4000 (Illumina).
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bioRxiv - Microbiology 2021Quote: To process the bacterial sequencing data (Illumina Miseq©, 2*250 bp), we used the FROGS pipeline [15] ...
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bioRxiv - Microbiology 2022Quote: ... and sequenced using 2×300 bp reads on a MiSeq instrument (Illumina).
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were sequenced using 2×150 cycles on a NovaSeq 6000 (Illumina).
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were sequenced using 2×150 cycles on a NovaSeq 6000 (Illumina).
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bioRxiv - Developmental Biology 2022Quote: ... paired-end (2 × 150 bp) sequencing on a NovaSeq 6000 platform (Illumina). Raw sequence reads were processed using an in-house developed pipeline ...
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bioRxiv - Cancer Biology 2022Quote: ... Paired-end 2×50 bp sequencing performed using a HiSeq2500 system (Illumina). Data quality control performed using FastQC v0.11.8 ...
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bioRxiv - Cell Biology 2022Quote: ... Library preparation (NexteraXT kit) and paired-end sequencing (Illumina HiSeq, 2×150bp) was performed by Azenta Life Sciences (Indianapolis ...
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bioRxiv - Biochemistry 2020Quote: ... 2 x 150 pair-end sequencing was performed using the HiSeq2500 (Illumina) with recommended protocol ...
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bioRxiv - Genomics 2020Quote: ... with the respiratory virus oligo panel including SARS-CoV-2 probes (Illumina, San Diego ...
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bioRxiv - Developmental Biology 2020Quote: ... and paired end-sequenced (2×75 bp) on the HiSeq 2500 (Illumina). Experiment 1 ...
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bioRxiv - Developmental Biology 2020Quote: ... The sequencing was outsourced (GENEWIZ Illumina NovaSeq/HiSeq 2×150 bp sequencing), generating a 20 million paired-end reads per replicate ...
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bioRxiv - Immunology 2020Quote: ... using 2 × 300 bp paired-end kits (Illumina MiSeq Reagent Kit v3). Sequence analysis and assembly of lineage trees were performed using an in-house custom analysis pipeline as previously described (39 ...
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bioRxiv - Developmental Biology 2022Quote: ... followed by the addition of 25 µl of 2× TD buffer (Illumina) and 7.5 µl of Nextra Tn5 transposase (Illumina) ...
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bioRxiv - Microbiology 2022Quote: ... SARS-CoV-2 stocks were deep sequenced on a MiSeq platform (Illumina). SARS-CoV-2 whole-genome amplicon-based sequencing was conducted by adapting an existing whole genome sequencing pipeline for poliovirus genotyping as described (Wang et al. ...
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bioRxiv - Immunology 2022Quote: ... with the NextSeq 500/550 High Output 2×75 cycles kit (Illumina). All sequenced samples were quality assessed by capillary electrophoresis with the Agilent RNA 2100 Nano kit (Bioanalyzer ...
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bioRxiv - Microbiology 2023Quote: ... The retained libraries were sequenced using MiSeq V3 (2 × 300 bp) (Illumina).
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bioRxiv - Microbiology 2023Quote: ... version 3 (2×300 bp read length; Illumina, San Diego, CA, USA).
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bioRxiv - Systems Biology 2023Quote: ... The paired-end sequencing (150 bp × 2) was performed with Novaseq6000 (Illumina) by Chemical Dojin Co ...
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bioRxiv - Plant Biology 2023Quote: ... and sequencing was performed using MiSeq 2 × 250 cycle paired-end (Illumina) with the Nano Kits v3 reagent ...
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bioRxiv - Cancer Biology 2023Quote: ... depending on library complexity) or NovaSeq (SP 2×250 cycles) platform (Illumina).
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bioRxiv - Genomics 2023Quote: ... followed by paired-end sequencing (2 × 150 bp) on a NextSeq2000 (Illumina) instrument ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were paired-end sequenced (2×75 bp) on a NextSeq500 (Illumina). BclToFastq was used for the preprocessing of the raw data (trimming and filtering) ...
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bioRxiv - Microbiology 2023Quote: ... and sequenced (paired-end 2×75-bp) in a NextSeq500 instrument (Illumina). Alignment to the reference genome sequence of Listeria monocytogenes EGDe (RefSeq ...
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bioRxiv - Molecular Biology 2023Quote: ... 2 or 4 nM concentration and run on NextSeq 550 sequencer (Illumina) with NextSeq 500/550 High Output v2.5 (75 cycles PE ...
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bioRxiv - Immunology 2023Quote: ... We sequenced the libraries on 2 lanes of a NovaSeq S4 (Illumina), aligned using CellRanger (10X Genomics ...
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bioRxiv - Cancer Biology 2023Quote: ... or paired-end (2 × 100 bp) on the Novaseq 6000 platform (Illumina).
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bioRxiv - Genomics 2023Quote: ... the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) was used for library preparation following the low-throughput protocol ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were sequenced with 2×50 bp reads on a NextSeq2000 (Illumina). Demultiplexing ...
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bioRxiv - Genomics 2020Quote: ... CNV analysis was performed on a combined cohort of 130 sequenced hESC lines and a control cohort consisting of 243 human samples from primary blood or lymphoblastoid cell lines (LCL) that had undergone WGS on the same platform (Illumina HiSeqX) and to similar depth as the hESC lines (Pato et al. ...
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bioRxiv - Cancer Biology 2020Quote: ... We used summarized log-scale intensities representing copy number profiles generated by combining probe intensities from four platforms (Agilent Human Genome CGH Microarray 44A, Nimblegen HG19 CGH 385K WG Tiling v2.0, Affymetrix GeneChip Human Mapping 500k Array Set and Illumina Human1Mv1_C BeadChip). A threshold of ≥ 0.9 and ≤ -0.9 was used to call copy number gains and losses ...