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Citations for Sciex :
51 - 100 of 102 citations for Yellow Fever Virus Envelope Protein Human Heterodimeric Fc tag since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cell Biology 2019Quote: ... Protein peak areas were exported to Markerview (AB Sciex, Foster City, CA, USA) for further processing ...
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bioRxiv - Neuroscience 2020Quote: The mass spectrometry files were searched using Protein Pilot (AB SCIEX, Concord, Canada) and Mascot (Matrix Science Inc. ...
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bioRxiv - Neuroscience 2020Quote: ... Samples were input in the Protein Pilot software v4.2 (AB SCIEX, Concord, Canada), which employs the Paragon algorithm ...
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bioRxiv - Biochemistry 2020Quote: ... DDA protein identification was performed on a SCIEX TripleTOF 6600 (SCIEX, Framingham, MA) coupled to an Eksigent Ultra nanoLC system (Eksigent Technologies ...
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bioRxiv - Neuroscience 2022Quote: ... Representative peptides spectrum against each sample was identified using Protein Pilot (AB Sciex) and corresponding UBA52 interacting proteins were predicted using MASCOT and NCBInr database.
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bioRxiv - Microbiology 2022Quote: All raw files (.wiff) were searched in protein Pilot software (version 4.5; Sciex) with Mascot algorithm for protein identification and semi quantitation against Swiss-Prot_57.15 database (20,266 sequences after application of Homo sapiens taxonomy filter) ...
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bioRxiv - Genomics 2021Quote: ... the proteins were subjected to mass spectrometry analysis with a TripleTOF 6600 system (Sciex).
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bioRxiv - Genomics 2020Quote: Mass spectral data were analysed using Protein Pilot 4.5 Beta Software (July 2012; Sciex). MS/MS spectra were searched against the genomic proteins and the 6-frame translated data set constructed from the genomic assembly scaffolds using EMBOSS ...
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bioRxiv - Microbiology 2020Quote: ... Data files were submitted for simultaneous searches using Protein Pilot version 5.0 software (Sciex) utilizing the Paragon and Progroup algorithms and the integrated false discovery rate (FDR ...
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bioRxiv - Biochemistry 2022Quote: Data files were submitted for simultaneous searches using Protein Pilot version 5.0 software (Sciex) utilizing the Paragon and Progroup algortihms and the integrated false discovery rate (FDR ...
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bioRxiv - Neuroscience 2021Quote: ... Analysis of differentially expressed proteins was performed using the OneOmics cloud processing online platform (SCIEX) as described in the Appendix Extended methods.
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bioRxiv - Molecular Biology 2022Quote: Database searching: MGF peak list files were created using Protein Pilot version 4.5 software (Sciex) for the data obtained with the 5600+ triple TOF and with Proteome Discoverer 2.3 software (Thermo ...
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bioRxiv - Biochemistry 2022Quote: Peptide and protein identification and quantification was performed with the ProteinPilot 4.5 software (AB SCIEX) using the Paragon database search algorithm ...
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bioRxiv - Molecular Biology 2020Quote: ... The proteins were labeled using 8plex iTRAQ reagent as per the manufacturer’s protocol (AB Sciex). The peptides were separated on Eksigent nano-LC (Ultra 2D ...
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bioRxiv - Microbiology 2020Quote: The resulting Protein-Pilot group file was used by PeakView® (version 2.1, AB SCIEX) to quantify proteins ...
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bioRxiv - Pathology 2020Quote: ... Protein database searching was performed against a reference Human Uniprot FASTA database (03-10-2018) by ProteinPilot™ Software 5.0 (SCIEX; Framingham, MA, USA) using a Paragon™ algorithm ...
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bioRxiv - Biochemistry 2021Quote: All intact protein and peptide analysis were carried out on a TripleTOF 5600 mass spectrometer (Sciex) operated with the turbo V DuoSpray ion source linked to an Ultimate 3000 RSLCnano system loading pump (Dionex ...
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bioRxiv - Cancer Biology 2021Quote: ... proteins were identified by LC-MS/MS analysis using Eksigent nanoLC (AB SCIEX, Framingham, MA, USA) coupled to LTQ Orbitrap Velos Pro mass spectrometer (Thermo Fisher Scientific ...
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bioRxiv - Plant Biology 2021Quote: ... the processed mrkw files containing protein information from PeakView were loaded into MarkerView (Version 1.2.1.1, AB Sciex) for normalization of protein intensity (total area sums ...
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bioRxiv - Cell Biology 2021Quote: Mass spectrometric data was searched using the database search engine Protein Pilot [23] (SCIEX 5.0, revision 4769) with the Paragon algorithm (5.0.0.0.4767) ...
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bioRxiv - Immunology 2019Quote: ... raw files obtained by DDA analysis of eight secreted protein samples were searched using ProteinPilot software (SCIEX), and search results were then imported into Spectronaut software (Biognosys ...
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bioRxiv - Microbiology 2023Quote: The digested proteins from each gel spot were analyzed using the NanoLC Ultra® 2Dplus System (SCIEX) combined with the cHiPLC® system in Trap-Elute mode ...
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bioRxiv - Physiology 2024Quote: ... The proteins were identified by MALDI TOF/TOF mass spectrometry (AB SCIEX TOF/TOF™ 5800 System) using Swiss-Prot database.
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bioRxiv - Biochemistry 2021Quote: ... The obtained protein peak areas were exported to Markerview™ version 1.3 (AB Sciex, Foster City, CA, USA) for further data refinement ...
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bioRxiv - Microbiology 2022Quote: ... protein mass fingerprints were obtained using a 5800 MALDI-TOF/TOF mass spectrometer (AB Sciex, Framingham, MA, USA), with detection in the linear middle mass in the range from 5000 to 20 000 Da ...
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bioRxiv - Physiology 2020Quote: ... Here the raw data was searched against the mouse Swissprot database (release October 2017) using the paragon algorithm on Protein-Pilot (Version 5.0.1, AB SCIEX). A total of 33847 proteins were searched ...
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bioRxiv - Molecular Biology 2023Quote: ... only proteins identified with a confidence score (FDR<0.01) and a total protein score >1.0 were retained according to the analysis with ProteinPilot (Sciex). For each protein of interest ...
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bioRxiv - Molecular Biology 2021Quote: ... Samples were analyzed by nanoLC-MS/MS on a Sciex 5600 quadrupole-TOF system and identified using mus musculus or the homo sapien databases with the Protein Pilot (ver 5.0, rev 4769) program (Sciex) as described previously42.
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bioRxiv - Biochemistry 2019Quote: The raw files in the format of “.wiff” containing the spectra of MS and MS/MS were submitted to Protein Pilot v4.0 software (AB Sciex) for protein identification and relative quantification ...
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bioRxiv - Biochemistry 2022Quote: ... Confidence of quantitation for differentially expressed proteins was analyzed with the ProteinPilot Descriptive Statistics Template (PDST) (beta v3.07p, AB SCIEX). Gene ontology (GO ...
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bioRxiv - Biochemistry 2019Quote: ... The results from ProteinPilot were used as an ion library to measure the abundance of peptides and proteins using PeakView 2.1 (SCIEX), with settings ...
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bioRxiv - Systems Biology 2020Quote: ... Tryptic peptides were generated from 8 µg of undepleted plasma proteins and separated on a NanoLC 425 System (SCIEX). 5 µl/min flow was used with trap-elute setting using a ChromXP C18 trap column 0.5 x 10 mm ...
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bioRxiv - Pharmacology and Toxicology 2022Quote: ... which was used as a sequence database to compare to mass spectral data using the Paragon algorithm in Protein Pilot 2.2 software (AB SCIEX). We report only peptides for which more than two tryptic fragments were detected with >95% confidence ...
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bioRxiv - Neuroscience 2022Quote: 100 μg of protein of each sample was dissolved in a dissolution buffer (AB Sciex, Foster City, CA, USA). After being reduced ...
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bioRxiv - Microbiology 2024Quote: ... coupled to nano-LC system was used to acquire samples and the results were analysed using Protein pilot software 5.0.1 (SCIEX, USA) using the Paragon algorithm ...
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bioRxiv - Molecular Biology 2021Quote: ... and reconstituted in 6 ul of 0.1% formic acid and peptides were sequenced buy nanoscale liquid chromatography coupled to tandem mass spectrometry (nano LC-MS/MS) and searched using the Protein Pilot program (Sciex).
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Molecular Basis of Sex Difference in Neuroprotection induced by Hypoxia Preconditioning in ZebrafishbioRxiv - Neuroscience 2020Quote: Prior to trypsin digestion all the protein samples were gone through reduction and cysteine blocking using the reagents provided with iTRAQ 4-plex kit (AB SCIEX). Digestion and labelling of proteins were done according to manufacturer’s protocol ...
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bioRxiv - Cell Biology 2022Quote: ... we used a sperm-specific spectral database obtained through a Data Dependant Acquisition (DDA) proteomic analysis performed on proteins extracted from spermatozoa in different conditions using a TripleTof 6600 mass spectrometer (Sciex).
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bioRxiv - Molecular Biology 2021Quote: ... Acquired spectra were searched against Mycobacterium tuberculosis from NCBInr database using Mascot search algorithm (version 2.0; Matrix Science, Boston, Massachusetts) and protein pilot software (SCIEX, USA) for protein identification (65 ...
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bioRxiv - Cell Biology 2022Quote: ... All MS/MS spectra were separated against the Mus musculus (mouse) proteome data set (UP000000589) at the Uniplot using Protein pilot software (SCIEX).
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bioRxiv - Neuroscience 2022Quote: ... Maximum of twenty precursors with minimum signal: noise ratio was selected from each spectrum for MS/MS analysis and identified using Protein Pilot (AB Sciex). The corresponding proteins against each spectrum showing high interaction with UBA52 were observed using MASCOT and NCBInr database.
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bioRxiv - Cancer Biology 2023Quote: ... IDA runs from MDA-468PC and MDA-468 PDTP-P were pooled together to generate an ion library and for analysis in Protein pilot software v4.5 (Sciex U.S.A) to obtain protein identities ...
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bioRxiv - Neuroscience 2023Quote: Unknown protein identification was performed by injecting 9 µL of the peptide digest onto a 5600 TripleTOF mass spectrometry (AB Sciex) with a microflow LC (Eksigent) ...
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bioRxiv - Systems Biology 2019Quote: Mass spectra were obtained for each prepared protein sample by using three instruments: (i) a TripleTOF 5600+ mass spectrometer with a NanoSpray III ion source (Sciex, USA) coupled to a NanoLC Ultra 2D+ nano-HPLC system (Eksigent ...
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bioRxiv - Plant Biology 2022Quote: A specific ion-library of the precursor masses and fragment ions was created by combining all files from the DDA experiments in one protein identification search using the ProteinPilot™ software (v5.0, Sciex®). The paragon method parameters were the following ...
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bioRxiv - Microbiology 2022Quote: ... 30 μL of the generated tryptic peptides of the microbial proteins were injected into a SCIEX 6600 triple TOF mass spectrometer (AB Sciex, Australia). The proteins were identified by comparing the peptide sequences against UniProt database (Uniprot.org) ...
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bioRxiv - Neuroscience 2022Quote: ... Fifty micrograms of protein from each sample were used for iTRAQ labeling according to the manufacturer’s instructions (iTRAQ Reagents – 8plex, SCIEX Cat# 4390811) and then fractionated into five fractions by cation exchange (Cation Exchange Buffer Pack ...
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bioRxiv - Cell Biology 2019Quote: ... database searching, and protein identification were performed as previously described (13, 43) using ProteinPilot software version 5.0 (AB Sciex, Foster City, CA) and the most recent version (v5.5 ...
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bioRxiv - Plant Biology 2020Quote: ... the equivalent of 1 μg of protein was analyzed on a Tandem Quadrupole Time-of-Flight mass spectrometer (AB/Sciex TripleTOF5600 Plus) coupled with a Nanospray III Ion Source (AB/Sciex ...
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bioRxiv - Cancer Biology 2021Quote: ... 2.5 μg of each sample was run on the nanoLC-MS/MS in DDA mode and the combined DDA runs were searched using Protein Pilot (SCIEX, AB Sciex Pte. Ltd, USA) to create the protein spectral library ...