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1 - 10 of 10 citations for 7 ACT since 2019

• Plant-microbe co-evolution: allicin resistance in a Pseudomonas fluorescens strain (PfAR-1) isolated from garlic

  Jan Borlinghaus, et al., bioRxiv - Evolutionary Biology 2019

  Quote: ... Artemis Comparison Tool (ACT, Carver et al. 2005), and UGENE (Okonechnikov et al. ...
• Genomic analysis of carbapenemase-encoding plasmids from Klebsiella pneumoniae across Europe highlights three major patterns of dissemination

  Sophia David, et al., bioRxiv - Microbiology 2019

  Quote: ... The Artemis Comparison Tool (ACT) v13.0.0 (Carver et al. 2005) was used to compare and visualise structural variation between two or more sequences.
• The Bacillus phage SPβ and its relatives: A temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management components

  Katharina Kohm, et al., bioRxiv - Microbiology 2021

  Quote: ... The comparison was visualised with ACT Release 18.1.0 (Carver et al., 2011). The SPβ-like prophages were tracked and identified through their homology to SPβ specific genes ...
• Reverting the mode of action of the mitochondrial F_OF₁-ATPase by Legionella pneumophila preserves its replication niche

  Pedro Escoll, et al., bioRxiv - Microbiology 2021

  Quote: ... The results are visually inspected with ACT (Artemis Comparison Tool) (Carver et al., 2005). In addition ...
• Comparative genomic analysis of Bradyrhizobium strains with natural variability in the efficiency of nitrogen fixation, competitiveness, and adaptation to stressful edaphoclimatic conditions

  Milena Serenato Klepa, et al., bioRxiv - Microbiology 2024

  Quote: ... The output files were used as input for the Artemis Comparison Tool (ACT) version 18.2.0 (Carver et al. 2005) to visualize genome synteny ...
• Spontaneous genomic variation as a survival strategy of nosocomial S. haemolyticus

  Ons Bouchami, et al., bioRxiv - Microbiology 2022

  Quote: ... Genomic comparisons were undertaken using a combination of Mauve (Darling et al. 2010) and Artemis (http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act) (Carver et al. 2005). All the genomes were visualized with BLAST Ring Image Generator (BRIG ...
• Evidence of structural rearrangements and variability in pESI(like) megaplasmids of S.Infantis by resolving the pESI-like ESBL-producing variants

  Patricia Alba, et al., bioRxiv - Microbiology 2022

  Quote: Graphical representation of the general structures and genetic regions was performed by using GView (https://www.gview.ca/; Petkau et al., 2010) and Artemis Comparison Tool (ACT) (Carver et al., 2005). The complete sequences of the plasmids have been deposited in the European Nucleotide Archive (ENA ...
• Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal new biological insights

  Rodrigo P. Baptista, et al., bioRxiv - Genomics 2021

  Quote: ... we also used each curated genome annotation in comparison with the others using the Artemis Comparison tool (ACT) 17.0.1 (Carver et al. 2005), allowing us to perform comparative annotation and resolve discrepancies via homology ...
• Destabilization of the Tumor-Inducing Plasmid from an Octopine-Type Agrobacterium tumefaciens Lineage Drives a Large Deletion in the Co-Resident At Megaplasmid

  Ian S. Barton, et al., bioRxiv - Microbiology 2019

  Quote: ... Genome alignments and comparisons were performed with mummer and mummerplot packages of MUMmer 3.23 (Kurtz et al. 2004) and Artemis Comparison Tool (ACT) (Carver et al. 2005) visualizations of TBLASTX (https://blast.ncbi.nlm.nih.gov/Blast.cgi ...
• Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples

  Aoife J. McHugh, et al., bioRxiv - Microbiology 2020

  Quote: Genome sequences for the 4 strains represented in the mock metagenomic community were downloaded from NCBI RefSeq and aligned in a pairwise manner using the Artemis comparison tool (ACT) (Carver et al., 2005) (Supplemental Figure 1) ...