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Citations for PacBio :
1 - 37 of 37 citations for High mobility group protein B1 HMGB1 Human since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: ... high-quality long reads from PacBio sequencing were selected and assembled using the Falcon assembler v.1.4.2 (Chin et al ...
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bioRxiv - Developmental Biology 2022Quote: High-quality isoforms were generated from PacBio reads using the Iso-Seq analysis pipeline of single-molecule real-time (SMRT ...
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bioRxiv - Genomics 2023Quote: ... we generated high-quality transcripts from PacBio long RNA reads using isoseq3 v3.4.0 [15] and aligned them to the QX1410 genome using minimap2 [38] ...
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bioRxiv - Genomics 2023Quote: The high-quality transcripts generated from PacBio IsoSeq data were used to identify putative target sequences ...
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bioRxiv - Genomics 2023Quote: 1,984,661 Pacific Biosciences high fidelity (PacBio HiFi) reads containing a total of 29,667,167,600 bases and a mean length of 14,948 bp were used for the assembly ...
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bioRxiv - Microbiology 2023Quote: High-quality HiFi reads were extracted from PacBio sequencing data requiring a minimum of 3 full passes in CCS command (v6.0.0 ...
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bioRxiv - Genomics 2023Quote: ... High-quality long-read datasets (PacBio and Nanopore) are available for chicken (see Supplementary Table 3) ...
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bioRxiv - Genomics 2023Quote: ... in human and from 2.5 (cDNA-PacBio) to 1.38 (dRNA-ONT) ...
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bioRxiv - Genomics 2021Quote: ... we generated high-quality transcripts from Pacific Biosciences (PacBio) long RNA reads using the isoseq3 pipeline v3.4.0 ([CSL STYLE ERROR ...
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bioRxiv - Genomics 2020Quote: ... High quality sequence data was proofread and generated by PacBio’s circular consensus sequencing (CCS) ...
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bioRxiv - Genomics 2021Quote: High molecular weight DNA for Pacific Biosciences (PacBio, Menlo Park, USA) Single-Molecule Real-Time (SMRT ...
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bioRxiv - Genomics 2024Quote: ... The extracted HMW gDNA was purified using high-salt-phenol-chloroform (PacBio) to remove coprecipitating contaminants ...
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bioRxiv - Genomics 2023Quote: ... This observation confirmed the high quality of the primary assembly achieved from PacBio reads including a post-processing step using Arrow (part of the GenomicConsensus package from PacBio) ...
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bioRxiv - Neuroscience 2020Quote: ... gRNA was combined with Cas9 protein (PacBio) and injected into one-cell stage embryos ...
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bioRxiv - Genomics 2022Quote: q20 High Fidelity (HiFi) reads were generated with the Circular Consensus Sequencing tool from PacBio® ccs v6.0.0 (--min-passes 3 --min-length 10 --max-length 60000 --min-rq 0.99) ...
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bioRxiv - Genomics 2023Quote: ... high molecular weight (HMW) DNA was obtained with the Nanobind plant nuclei kit (Circulomics-PacBio), either from roots or young leaves ...
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bioRxiv - Neuroscience 2024Quote: High molecular weight (HMW) was extracted using PacBio’s Nanobind CBB Kit (Pacbio, 102-301-900) from 2 x 106 cells with the Nanobind adherent cultured cells protocol ...
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bioRxiv - Genomics 2019Quote: ... SMART library was prepared from high molecular weight genomic DNA (>50kbp) and applied to sequencing by PacBio Sequel.
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bioRxiv - Cell Biology 2023Quote: ... The RNA peaks on the electropherogram were considered high quality and processed further for sequencing by PacBio.
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bioRxiv - Genomics 2024Quote: ... Further selection of high molecular weight DNA was performed using the Short Read Eliminator (SRE) kit (PacBio) according to the manufacturer’s guide ...
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bioRxiv - Molecular Biology 2023Quote: ... trimmed reads were mapped against the human reference genome GRCh38.p14 (GCA_000001405.29, February 2022) using Minimap2 (Version 2.24) (Li 2018) (PacBio/Oxford Nanopore read to reference mapping ...
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bioRxiv - Genetics 2020Quote: ... We skipped the misjoin detection step due to its high false-positive rate in the contigs derived from PacBio long reads ...
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bioRxiv - Bioengineering 2019Quote: ... pusillus grown on Potato Dextrose Agar (PDA) was used to extract the genomic DNA (gDNA) through a high salt phenol-chloroform cleanup protocol recommended by PacBio® systems ...
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bioRxiv - Genomics 2020Quote: ... total RNA was isolated from the abomasum pyloric with high expression of MUC6 from two heterozygous goats and sequenced by PacBio Sequel ...
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bioRxiv - Molecular Biology 2023Quote: High molecular weight DNA was extracted from frozen pellets (1 million cells) using the Nanobind HMW DNA Extraction kit (PacBio) following the manufacturer’s instructions ...
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bioRxiv - Evolutionary Biology 2023Quote: ... were subsequently constructed for single-molecule real-time (SMRT) sequencing to generate long high-fidelity (HiFi) reads with the Pacific Biosciences (PacBio) Sequel II system at the West German Genome Sequencing Center of HHU Düsseldorf.
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bioRxiv - Evolutionary Biology 2024Quote: ... High molecular weight DNA was extracted from blood cells embedded in agarose blocks using the Nanobind CBB kit (Circulomics/PacBio). Construction of PacBio SMRT-bell sequencing libraries and long read sequencing on PacBio Sequel II were conducted at the Roy J ...
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bioRxiv - Microbiology 2023Quote: ... CCS reads were filtered for those with size 3100- 3394bp and high-quality reads (Phred>20) using Filter FASTQ and mapped to the LASV reference seq (MH358389) with Minimap2 (PacBio HiFi reads vs reference mapping (- k19 -w19 -U50,500 -g10k -A1 -B4 -O6,26 -E2,1 -s200)) ...
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bioRxiv - Genomics 2020Quote: ... non-unique-PacBio+Uniprot (peptides mapped to both PacBio and Uniprot proteins), and multigene (peptides mapped to multiple genes).
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bioRxiv - Genomics 2023Quote: ... we relied on a combination of protein and transcript evidence constructed from PacBio Iso-Seq and bulk Illumina RNA-seq for our focal species as well as related species in the tribe Sileneae ...
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bioRxiv - Microbiology 2022Quote: The taxonomic composition of bacterial communities in the post-mortem human brain tissues were analyzed using the Pacific Biosciences (PacBio) single molecule real-time (SMRT ...
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bioRxiv - Cancer Biology 2024Quote: ... Raw sequencing data was aligned to the GRCh38/hg38 build of the human reference genome using pbmm2 as part of SMRTLink (PacBio) v 13 and structural variants were detected using pbsv ...
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bioRxiv - Genomics 2022Quote: ... hatsudake JH5 was de novo sequenced using high throughput Illumina Hiseq X-Ten and PacBio RSII long-read sequencing platforms (PacBio P6-C4) at Beijing Novogene Technology ...
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bioRxiv - Genomics 2023Quote: ... The DNA was then selected for high molecular weight DNA using the PacBio Short Read Eliminator kit (PacBio, Menlo Park, CA, USA). Concentration was assessed using the dsDNA BR assay on a Qubit fluorometer (Thermo Fisher Scientific ...
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bioRxiv - Microbiology 2024Quote: Extraction of high molecular weight DNA from overnight cultures of CPs was accomplished using the Nanobind CBB kit (PacBio catalog no.102-301-900). Barcoded sequencing libraries were prepared using the SMRTbell prep kit 3.0 (PacBio catalog no.102-141-700 ...
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Evolutionary conserved aspects of animal nutrient uptake and transport in sea anemone vitellogenesisbioRxiv - Evolutionary Biology 2022Quote: The Cas9-mediated knock-in injection was performed by modifying previously described protocols for CRISPR/Cas9-mediate mutagenesis and used 0,75μg/μl nls-Cas9 protein (PacBio), 75ng/μl of each guide RNA ...
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bioRxiv - Developmental Biology 2023Quote: The Cas9-mediated knock-in injection was performed by modifying previously described protocols for CRISPR/Cas9-mediated mutagenesis and used 0,75μg/μl nls-Cas9 protein (PacBio), 75ng/μl of each guide RNA ...