Labshake search
Citations for PacBio :
1 - 21 of 21 citations for 6 Amino 5 formamido uracil since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2021Quote: ... HGAP4 in SMRT Link v.6 (PacBio) was used to obtain polished long reads in fastq format ...
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bioRxiv - Genomics 2021Quote: PacBio subreads were extracted with the SMRT Link (version 6) software tool from PacBio. The extracted subreads were then corrected ...
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bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
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bioRxiv - Genomics 2023Quote: ... The library with 0.5-6 kb cDNA fragments was sequenced with Iso-Seq mode on PacBio Sequel II system (PacBio, USA).
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bioRxiv - Genomics 2024Quote: ... (0.75% DF Marker S1 high pass 6-10kb v3) and DNA was further purified with PacBio AMPure beads and treated with DNA damage repair mix (PacBio) (37°C for 60 mins ...
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bioRxiv - Evolutionary Biology 2023Quote: ... About 6 pg of DNA was sheared using a 26G blunt end needle (PacBio protocol PN 101-181-000 Version 05) to ∼40 kb fragments ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
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bioRxiv - Immunology 2021Quote: ... with overhanging sequences containing identifiers (sequences of 6 base-pairs) and adapter sequences appropriate for Illumina HiSeq platforms (or PacBio; Pacific Biosciences). Unique identifiers were used for each T-cell population targeting one antigen ...
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bioRxiv - Cell Biology 2022Quote: A reference fasta file was generated with the 5 picked candidates from PacBio sequencing dataset ...
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bioRxiv - Genomics 2019Quote: ... including L1Hs insertion sequences and 5’ and 3’ target site duplicate sequences from PacBio data ...
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bioRxiv - Evolutionary Biology 2021Quote: ... A 20kb SMRTbell template library was constructed for each pool separately and sequenced individually on the PacBio Sequel system using 3 PacBio SMRT® sequencing cells per library (6 PacBio SMRT® sequencing cells in total)(Macrogen Europe) ...
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bioRxiv - Immunology 2020Quote: ... 5 ug of fragmented DNAs were converted to SMRTbell libraries using the SMRTbell Template Prep Kit 1.0 (PacBio). The libraries were size-selected (7-kb size cutoff ...
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bioRxiv - Genomics 2019Quote: ... (Large insertions and deletions are defined to be greater than or equal to 3 nts for Illumina data or greater than or equal to 5 nts for PacBio data ...
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bioRxiv - Genomics 2022Quote: ... Windows were excluded if in proximity (within ∼5 kbp) with potentially collapsed or low-confidence assembly regions (considering a PacBio reads coverage value higher than twice the average genome-wide coverage or lower than 10 ...
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bioRxiv - Neuroscience 2024Quote: Ultra-high molecular weight DNA (UHMW) was extracted from the WIBR3 (parental) hESC line (5 x 106 cells) following the Circulomics/Pacific Biosciences (PacBio) UHMW DNA Nanobind Extraction protocol (Circulomics/PacBio ...
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bioRxiv - Genomics 2021Quote: We intersected the uniform 100 bp sized TSS regions from K562 (as described above) with K562 PacBio 5’ read ends (generated from Format-PacBio-Data.sh, see above for more details) using bedtools intersect with the -c flag-which counts the number of overlapping entries-and requiring genomic strands to match.