Labshake search
Citations for PacBio :
1 - 37 of 37 citations for 6 Amino 5 2 2 diethoxyethyl 4 hydroxy Pyrimidine since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ PacBio round 2 forward primer (PacBio_5pri_RND2), 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2) ...
-
bioRxiv - Microbiology 2024Quote: ... 2 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
-
bioRxiv - Genomics 2023Quote: ... Illumina data (8,605,412 read pairs from accession WV-PRD-2-4, the same collection used for PacBio sequencing) were trimmed with BBDUK v.38.51 (https://sourceforge.net/projects/bbmap ...
-
bioRxiv - Microbiology 2023Quote: ... 2 µg of DNA were used for Pacific Biosciences (PacBio) sequencing (Centre For Genomic Research ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Each pool was sequenced on 1-2 Sequel II SMRTcells 8M (PacBio) on the Sequel IIe instrument ...
-
bioRxiv - Genomics 2020Quote: ... sequencing one cell with CLR version 2 chemistry (PacBio, Menlo Park, CA, USA).
-
bioRxiv - Genomics 2021Quote: ... The 1,000-cell library was sequenced using 2 SMRTcells (PacBio, 101-008-000) for a sequencing depth of 5,764,421 full-length non-chimeric reads.
-
bioRxiv - Bioengineering 2023Quote: ... 2 weeks later and subjected to large deletions detection (PCR and PacBio sequencing). Single cells were isolated from bulk edited cells into 96-well plates 2 weeks after electroporation and genotyped 2 weeks after isolation ...
-
bioRxiv - Genomics 2024Quote: ... Four generations of full-sib matings were carried out to produce the genomic strain SaPa_ori_Rep25-2-1-1 (“Sapa_PacBio”). Fly strains were maintained at room temperature on standard cornmeal food provided by the UC Davis Fly Kitchen with filter paper for environment structure and pupariation substrate.
-
bioRxiv - Genomics 2021Quote: ... The obtained reads were clustered using the Iso-Seq 2 pipeline implemented in SMRT Link ver.5.1.0 (PacBio). The high-quality (hq ...
-
bioRxiv - Evolutionary Biology 2021Quote: ... HGAP4 in SMRT Link v.6 (PacBio) was used to obtain polished long reads in fastq format ...
-
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breedingbioRxiv - Genomics 2020Quote: ... and 2) the distance between the two blast hits was largely consistent with the SV size estimated by PacBio read mapping ...
-
bioRxiv - Genetics 2019Quote: ... SMRT bell libraries were prepared following the “Procedure and Checklist-2 kb Template Preparation and Sequencing” protocol from PacBio using the SMRTbell Template Prep Kit v1.0 (PacBio Cat#100-259-100) ...
-
bioRxiv - Genetics 2019Quote: ... Libraries were built following the “Procedure & Checklist – 2 kb Template Preparation and Sequencing” protocol (PN 001-143-835-08) from PacBio with a few modifications ...
-
bioRxiv - Biochemistry 2020Quote: ... Libraries were built as per the “Procedure & Checklist – 2 kb Template Preparation and Sequencing” protocol (PN 001-143-835-08) from PacBio with some modifications ...
-
bioRxiv - Plant Biology 2024Quote: ... for 6 passes of centrifugation at 1,990 x g for 2 min and was subsequently purified with SMRTbell® cleanup beads (PacBio Ref. No. 102158-300). 2 μL sheared DNA was taken for fragment size examination through overnight pulse-field gel electrophoresis ...
-
bioRxiv - Genomics 2021Quote: PacBio subreads were extracted with the SMRT Link (version 6) software tool from PacBio. The extracted subreads were then corrected ...
-
bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
-
bioRxiv - Genomics 2023Quote: ... The library with 0.5-6 kb cDNA fragments was sequenced with Iso-Seq mode on PacBio Sequel II system (PacBio, USA).
-
bioRxiv - Genomics 2024Quote: ... (0.75% DF Marker S1 high pass 6-10kb v3) and DNA was further purified with PacBio AMPure beads and treated with DNA damage repair mix (PacBio) (37°C for 60 mins ...
-
bioRxiv - Evolutionary Biology 2023Quote: ... About 6 pg of DNA was sheared using a 26G blunt end needle (PacBio protocol PN 101-181-000 Version 05) to ∼40 kb fragments ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Microbiology 2024Quote: ... 1 µL of 10 µM 5’ nucleotide tagging primer (PacBio_5pri_G or PacBio_5pri_C), 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G) ...
-
bioRxiv - Immunology 2021Quote: ... with overhanging sequences containing identifiers (sequences of 6 base-pairs) and adapter sequences appropriate for Illumina HiSeq platforms (or PacBio; Pacific Biosciences). Unique identifiers were used for each T-cell population targeting one antigen ...
-
bioRxiv - Cell Biology 2022Quote: A reference fasta file was generated with the 5 picked candidates from PacBio sequencing dataset ...
-
bioRxiv - Genomics 2019Quote: ... including L1Hs insertion sequences and 5’ and 3’ target site duplicate sequences from PacBio data ...
-
bioRxiv - Evolutionary Biology 2021Quote: ... A 20kb SMRTbell template library was constructed for each pool separately and sequenced individually on the PacBio Sequel system using 3 PacBio SMRT® sequencing cells per library (6 PacBio SMRT® sequencing cells in total)(Macrogen Europe) ...
-
bioRxiv - Immunology 2020Quote: ... 5 ug of fragmented DNAs were converted to SMRTbell libraries using the SMRTbell Template Prep Kit 1.0 (PacBio). The libraries were size-selected (7-kb size cutoff ...
-
bioRxiv - Microbiology 2022Quote: ... DNA extraction, library preparation, sequencing (Pacific Biosciences Sequel, 4 samples on one SMRT cell) and assembly (‘Microbial Assembly’ function in PacBio SMRT® Link v8.0 for ACAM34_DSMZ and flye assembly tool v2.6 [65] for ACAM34_UNSW ...
-
bioRxiv - Genomics 2019Quote: ... (Large insertions and deletions are defined to be greater than or equal to 3 nts for Illumina data or greater than or equal to 5 nts for PacBio data ...
-
bioRxiv - Genomics 2022Quote: ... Windows were excluded if in proximity (within ∼5 kbp) with potentially collapsed or low-confidence assembly regions (considering a PacBio reads coverage value higher than twice the average genome-wide coverage or lower than 10 ...
-
bioRxiv - Neuroscience 2024Quote: Ultra-high molecular weight DNA (UHMW) was extracted from the WIBR3 (parental) hESC line (5 x 106 cells) following the Circulomics/Pacific Biosciences (PacBio) UHMW DNA Nanobind Extraction protocol (Circulomics/PacBio ...
-
bioRxiv - Genomics 2021Quote: We intersected the uniform 100 bp sized TSS regions from K562 (as described above) with K562 PacBio 5’ read ends (generated from Format-PacBio-Data.sh, see above for more details) using bedtools intersect with the -c flag-which counts the number of overlapping entries-and requiring genomic strands to match.