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1 - 14 of 14 citations for Zika Virus Envelope Protein Suriname strain since 2019

• La Crosse virus reassortants highlight genomic determinants of infection and pathogenesis

  Nicole C. Rondeau, et al., bioRxiv - Microbiology 2024

  Quote: RNA conservation within WT strains was aligned using Smitt-Watermen RNA alignment and protein conservation within WT strains was generated using ClustalW Multiple Sequence alignment with MegAlign Pro (DNASTAR; Version 17.4.1.17).
• Characterization of the novel clinical isolate X-4 containing a new tp0548 sequence-type

  Dan Liu, et al., bioRxiv - Genetics 2019

  Quote: ... pallidum Nichols strain using Lasergene software (DNASTAR, Madison, WI, USA).
• Mechanisms for Electron Uptake by Methanosarcina acetivorans During Direct Interspecies Electron Transfer

  Dawn E. Holmes, et al., bioRxiv - Microbiology 2021

  Quote: ... acetivorans strain C2A genome (NC_003552) downloaded from IMG/MER (img.jgi.doe.gov) using ArrayStar software (DNAStar). Reads were normalized and processed for differential expression studies using the edgeR package in Bioconductor (65) ...
• Detrimental Impact of a Type VI Secretion System on Direct Interspecies Electron Transfer

  Jessica A. Smith, et al., bioRxiv - Microbiology 2023

  Quote: ... sulfurreducens strain PCA genome (NC_002939) downloaded from IMG/MER (img.jgi.doe.gov) using ArrayStar software (DNAStar). Common dispersion (Disp ...
• Survey of severe fever with thrombocytopenia syndrome virus covert infection for healthy people in Henan Province, China

  Yanhua Du, et al., bioRxiv - Epidemiology 2019

  Quote: The genomes of SFTS virus isolates were compiled using the SeqMan program in the LaserGene software package (DNAStar). The percentage similarities of nucleotide identity or amino acid identity were calculated using the ClustalX software[16] ...
• Extracellular electron transfer increases fermentation in lactic acid bacteria via a hybrid metabolism

  Sara Tejedor-Sanz, et al., bioRxiv - Microbiology 2021

  Quote: ... plantarum strain 8.1 and NCIMB700965 were aligned to the NCIMB8826 genome in MegAlign Pro (DNAstar Inc., Madison, WI, USA).
• Evolutionary instability of collateral susceptibility networks in ciprofloxacin resistant clinical Escherichia coli strains

  Vidar Sørum, et al., bioRxiv - Microbiology 2021

  Quote: ... raw reads from the evolved WTevolved and CIP-Revolved were aligned to previously annotated (RAST 2.0 for E. coli (60)) sequences of the WT strains utilizing standard settings in SeqMan NGen (DNASTAR, Madison, WI). Minimum values of reported SNPs were 10x coverage depth and 90% variant base calls ...
• Architectural asymmetry enables DNA transport through the Helicobacter pylori cag type IV secretion system

  Mackenzie E. Ryan, et al., bioRxiv - Microbiology 2023

  Quote: ... Protein sequence alignments were performed using MegAlign Pro (DNAstar). Superimposed images of protein structures were generated using ChimeraX Matchmaker84 ...
• Diversity of Antimicrobial-Resistant Aeromonas Species Isolated from Aquatic Environments in Brazil

  Danieli Conte, et al., bioRxiv - Microbiology 2020

  Quote: ... Nucleotide and protein sequences were analyzed using Lasergene Software Package (DNASTAR, Madison, WI, USA). Resistance gene references were selected in GenBank database.
• New Tricks for an old molecule: Preserved antibacterial activity of ribosomal protein S15 during evolution

  Baozhen Qu, et al., bioRxiv - Immunology 2020

  Quote: ... Multiple protein sequences were aligned using the MegAlign program of the LASERGENE software suite (DNASTAR). The SWISS-MODEL prediction algorithm (https://swissmodel.expasy.org/ ...
• Translation initiation factor eIF1.2 promotes Toxoplasma stage conversion by regulating levels of key differentiation factors

  Fengrong Wang, et al., bioRxiv - Microbiology 2023

  Quote: ... The visualization of proteins sequences alignment was generated using ClustalW in MegAlign Pro (v17.5.0, DNASTAR).
• Molecular characterization of RIGI, TLR7 and TLR3 as immune response gene of indigenous ducks in response to Avian influenza

  Aruna Pal, Abantika Pal, Pradyumna Baviskar, bioRxiv - Genomics 2020

  Quote: Nucleotide variation for the proteins was detected from their nucleotide sequencing and amino acid variations were estimated (DNASTAR). 3D structure of the derived protein was estimated for both indigenous ducks and chicken by Pymol software ...
• Establishing Prokaryotic Expression System of Angiotensin-Converting Enzyme 2 (ACE2) gene in pigs

  Hang Xiao, et al., bioRxiv - Biochemistry 2020

  Quote: ... predict the transmembrane and transmembrane directions of ACE2 encoded protein and Kyte-Doolittle method predicts the hydrophilic region by DNASTAR software.
• Orientia tsutsugamushi Ank5 directs ubiquitination and proteasomal degradation of NLRC5 to inhibit major histocompatibility complex class I expression

  Haley E. Adcox, et al., bioRxiv - Microbiology 2023

  Quote: ... predicted atomic protein docking interactions between Ank5 and the NLRC5 NACHT domain using the SwarmDock algorithm.135 Protean 3D (DNASTAR) was used to visually depict the NovaDock predictions.