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Citations for Illumina :
1 - 38 of 38 citations for R + SCH 23390 hydrochloride since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: ESC-R-Ec isolates were sequenced by Illumina NovaSeq 6000 or Illumina MiSeq as previously described (33) ...
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bioRxiv - Molecular Biology 2023Quote: Ribo-Zero Magnetic Kit H/M/R (Epicentre/Illumina) was used to remove ribosomal RNAs and to enrich mRNAs ...
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bioRxiv - Genomics 2020Quote: ... We used Ribo-Zero Magnetic Kit H/M/R (Illumina) to remove rRNAs from total RNA samples for analyses of non-polyadenylated RNAs.
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bioRxiv - Microbiology 2023Quote: ... Sequencing libraries were prepared with Illumina DNA prep (Illumina(R), San Diego ...
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bioRxiv - Cell Biology 2022Quote: ... an R package designed for statistical analysis of gene counts generated from Illumina-based sequencing ...
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bioRxiv - Neuroscience 2022Quote: ... The B-allele frequency and Log R ratio values were downloaded from Illumina GenomeStudio and processed and plotted using the GWASTools package in R (v3.6.1 ...
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bioRxiv - Evolutionary Biology 2021Quote: ... sample 2 was treated with 20 U RNase R (Epicentre/Illumina, Cat. No. RNR07250) for 1 h at 37°C to degrade linear RNAs ...
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bioRxiv - Genomics 2020Quote: ... and rRNA depletion was performed using Ribo-Zero Magnetic Kit H/M/R (Epicentre/Illumina).
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bioRxiv - Microbiology 2021Quote: ... MERS-CoV samples were treated with RiboZero H/M/R rRNA (Illumina, San Diego, CA) depletion mix following the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2022Quote: ... Linear RNA was digested following standard protocols using Epicentre Ribonuclease R (Illumina, San Diego, USA). Following purification ...
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bioRxiv - Microbiology 2024Quote: ... The NEBNext(R) Ultra II Directional RNA Library prep kit from Illumina (Cat. no. E7760L), was used to construct double-stranded cDNA libraries from the rRNA-depleted RNA ...
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bioRxiv - Microbiology 2024Quote: ... Ribosomal RNA was depleted using the Illumina RiboZero Gold H/M/R Kit (Illumina, UK). Libraries were prepared using the TruSeq Stranded mRNA Kit (Illumina ...
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bioRxiv - Molecular Biology 2021Quote: ... 5ug of RNA from individual tissues were treated with 15 units of RNAse R (Epicentre, Illumina, USA) for 15 minutes at 37 degrees Celsius ...
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bioRxiv - Genomics 2020Quote: ... The B allele frequency (BAF) and the log R ratio (LRR) were extracted from GenomeStudio (Illumina, USA) for representation.
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bioRxiv - Neuroscience 2020Quote: ... The B allele frequency (BAF) and the log R ratio (LRR) were extracted from GenomeStudio (Illumina, USA) for representation.
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bioRxiv - Genomics 2020Quote: ... Log R Ratio and B Allele Frequency were extracted using Genome Studio 2.0 (Illumina, San Diego, California, USA). Data available upon request.
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bioRxiv - Cell Biology 2023Quote: ... Library preparation from RNA is performed with amplification (TruSeq Stranded Total RNA H/M/R-Gold, ILLUMINA®), either through automation (MICROLAB Star® ...
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bioRxiv - Microbiology 2020Quote: ... 3 to 12 µl of extracted RNA was depleted of rRNA using Ribo-Zero Gold H/M/R (Illumina) and then reverse-transcribed using random hexamers and SuperScript IV (ThermoFisher Scientific) ...
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bioRxiv - Cancer Biology 2022Quote: ... Log R Ratio (LRR) data was extracted for all probes and array annotation obtained from Illumina (InfiniumOmniExpress-24v1-3_A1). LRR data was then smoothed and segmentation called using the CBS algorithm from the DNACopy54 ...
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bioRxiv - Molecular Biology 2022Quote: ... RNA-seq libraries were prepared starting from 1µg of RNA using the TruSeq Stranded Total RNA Ribo-Zero H/M/R Gold kit (Illumina). Libraries were quantified in a Qubit system (ThermoFisher ...
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bioRxiv - Neuroscience 2022Quote: ... B allele frequency and log R ratio of each single nucleotide polymorphism (SNP) marker were collected from GenomeStudio (Illumina) and analyzed with PennCNV [70] and QuantiSNP [10] with default parameter settings ...
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bioRxiv - Developmental Biology 2021Quote: ... according to the manufacturer’s reference guide (document #15066016 v01) with Ribo-Zero Gold Kit (H/M/R) (Illumina, MRZG126). The prepared libraries were sequenced on a HiSeq 2500 system (Illumina).
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bioRxiv - Molecular Biology 2020Quote: ... At least 50 ng of r-RNA depleted RNA was used to generate sequencing libraries using the True-seq small RNA library prep kit (Illumina). All libraries were barcoded and sequenced in parallel on a Next-seq platform for 400 million reads to obtain 75 bp single end reads.
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bioRxiv - Genetics 2021Quote: ... the log R (LRR) intensity measurements and B allele frequency (BAF) for each sample at each probe were exported from Illumina’s Genome Studio software ...
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bioRxiv - Cancer Biology 2021Quote: ... 2×101 paired-end RNA-seq libraries were constructed using TruSeq stranded total RNA H/M/R prep kit and sequenced using the Novaseq6000 system (Illumina). Raw paired-end sequencing reads were mapped to the human genome (build hg38 ...
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bioRxiv - Developmental Biology 2022Quote: ... Extracted DNA was PCR-amplified (F 5’ – GTGCCTTCTCCGTCAGTCTC – 3’, R 5’ – GCAGGCACAAATCCAAGTTT – 3’, and subsequently subjected to next-generation sequencing in an Illumina MiSeq platform 116 ...
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bioRxiv - Genetics 2020Quote: ... Ribosomal RNA was subtracted by hybridization from total RNA samples using the RiboZero Magnetic Gold H/M/R Kit (Illumina) and the rRNA-subtracted samples were quantified with a Qubit 2.0 (RNA HS Kit ...
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bioRxiv - Genetics 2021Quote: ... To assess genomic integrity of iPS lines we investigated the B-allele frequency and Log R ratio values of each iPS line which were downloaded from Illumina GenomeStudio ...
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bioRxiv - Genetics 2024Quote: ... we aligned the corresponding short reads to the human reference GRCh38 using bwa mem23 (v 0.7.17-r1188; -t 48 -R “@RG\tID:1\tLB:lib1\tPL:ILLUMINA\tSM:
\tPU:unit1”). Next ... -
bioRxiv - Neuroscience 2023Quote: ... 100 ng of total BH RNA with and without RNase R treatment was then used to construct cDNA libraries by Illumina Stranded Total RNA Prep Ligation with Ribo-Zero Plus (Illumina 20072063) ...
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bioRxiv - Microbiology 2024Quote: ... The Breseq v0.37.1 pipeline was used for variant calling with bowtie2 v2.4.5 and R v4.2.2 (Barrick et al., 2014; Illumina Whole Genome Sequencing, n.d.).
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bioRxiv - Systems Biology 2024Quote: ... Reads were mapped to mouse genome (mm10) with bwa mem (−5SP -T0 -R “@RG\tID:$rg\tSM:$rg\tLB:$rg\tPL:ILLUMINA\tPU:none”). The alignments were converted into .pairs ...
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bioRxiv - Genomics 2023Quote: ... These BAM files were quality checked by using systemPipeR’s alignStats function and subsequently a gene reads table was calculated by the summarzieOverlaps function of the GenomicAlignments (29) R/BioConductor package and the corresponding Gene Transfer Format (GTF) file (Illumina’s iGenomes). Normalization and detection of deregulated genes was performed using the DESeq2 v ...
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bioRxiv - Cell Biology 2024Quote: ... B allele frequency (BAF) and log R ratio (LRR) of each single nucleotide polymorphism (SNP) marker were collected from GenomeStudio (Illumina, USA). These were used for CNV analyses which was performed using PennCNV34 and QuantiSNP35 with default parameter settings ...
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bioRxiv - Genomics 2024Quote: ... The trimmed reads were mapped separately to our reference genome using the tool bwa mem (-M-R’@RG\tID:$Population\tSM:$Individual\tPL:ILLUMINA’, v0.7.17, Li 2013). Low quality alignments were removed using samtools (-q 30-f 0×0002-F 0×0004-F0×0008 ...
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bioRxiv - Developmental Biology 2020Quote: ... both ribosome footprinting and total RNA samples were depleted of rRNA using the Ribo-Zero Gold rRNA Removal Kit (H/M/R) (Illumina, catalog no. MRZG126) with the modification that the 50°C incubation was not performed for the ribosome footprinting samples ...
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Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiationbioRxiv - Developmental Biology 2022Quote: ... RNA-seq libraries were prepared from total RNA (≥200 nucleotides in length) using the TruSeq Stranded Total RNA Ribo-Zero H/M/R kit (Illumina, RS-122-2201). Libraries were paired-end sequenced on a NextSeq 500 (Illumina ...
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Lactylation-driven FTO-mediated m6A modification of CDK2 aggravates diabetic microvascular anomaliesbioRxiv - Cell Biology 2023Quote: ... purified input RNAs and immunoprecipitated RNA fragments were sent for library construction with the VAHTS Total RNA-Seq (H/M/R) Library Prep Kit for Illumina (Vazyme, Nanjing, China) and sequencing using the Illumina HiSeq 2500 (Illumina, San Diego, CA, USA). Quality control and raw sequencing data filtration were achieved with the FastQC and fastp software ...